1.Pregnancy probability prediction models based on 5 machine learning algorithms and comparison of their performance
Chao REN ; Huan YANG ; Niya ZHOU ; Qing CHEN ; Wenzheng ZHOU ; Tong WANG ; Xi LING ; Lei SUN ; Peng ZOU ; Zhuoyue LIANG ; Lin AO ; Jinyi LIU ; Jia CAO
Journal of Army Medical University 2025;47(12):1376-1387
Objective To construct 5 machine-learning models and compare their performance in predicting the associations between pre-pregnancy socio-psycho-behavioral exposures of both spouses and preconception outcomes.Methods Based on Chongqing Preconception Reproductive Health and Birth Outcome Cohort of volunteers recruited from Chongqing Health Center for Women and Children during January 2019 and March 2022,5 447 couples were recruited and surveyed through interviewer-interview for the demographic and social-psychological-behavioral data of both spouses(221 variables).According to the inclusion and exclusion criteria,4 097 couples were finally included,and randomly assigned into a training set(n=2 867 spouses)and a validation set(n=1 230 spouses)at a ratio of 7∶3.Feature analysis and collinear screening were applied to select the potential exposure factors.In consideration of difficulty to carry out semen parameters analysis in primary healthcare institutions,feature Set 1 including sperm parameters and feature Set 2 excluding semen parameters were constructed by including or excluding sperm quality simultaneously in the training set and the validation set.Five algorithms,that is,Logistic Regression,Naive Bayes,Random Forest,Gradient Boosting Machine,and Support Vector Machine,were used to construct preconception outcome prediction models,and the parameters of each model were optimized using random search combined with grid search.The predictive performance of each model was compared using precision,recall,F1 score,area under the receiver operating characteristic curve(AUC),and calibration curve.The optimal model was then selected by comparing the changes in the predictive ability of the questionnaire data for fertility outcomes with or without semen parameters.Results There were 24 variables screened out in feature Set 1,and 16 variables in feature Set 2.In feature Set 1,the gradient boosting machine performed better,with a relatively higher AUC value(0.651)and better F1 score(0.61).The logistic regression model performed stably(AUC value=0.647)and was suitable as the reference model.The random forest(AUC value=0.641),Naive Bayes(AUC value=0.641),and support vector machine(AUC value=0.634)performed second-best.By utilizing the gradient boosting machine,comparable results were found between the predictions from feature sets with or without semen parameters,as in feature Set 1,the AUC value of its validation set was 0.651(95%CI:0.629~0.681),the prediction accuracy was 0.63,the recall rate was 0.65,and the average precision value F1 was 0.61;and in feature Set 2,the AUC value of its validation set was 0.649(95%CI:0.624~0.663),and both the calibration curves were close to the ideal curve.The prediction results indicated that in feature Set 1,the features highly negatively correlated with preconception outcomes were female age,male age,and no pregnancy within 1 year without contraception,while the features highly positively correlated with preconception outcomes were female pregnancy history,total sperm vitality,and use of contraceptive measures before enrollment.Conclusion Among the 5 machine-learning algorithms performed in this cohort data,the gradient boosting machine shows slightly better performance.There are 24 factors being associated with preconception outcomes in both spouses,and the performance of the simplified model excluding semen parameters is not significantly declined.It is feasible to use machine-learning methods to predict human preconception outcomes through social-psychological-behavioral questionnaires.
2.Clinical case analysis of an autoimmune glial fibrillary acidic protein astrocytopathy
Xiaoyan WANG ; Zhong ZHAO ; Wenli CHEN ; Niya WANG ; Hao TANG
Chinese Journal of Immunology 2025;41(7):1768-1771
Objective:To summarize the clinical characteristics of autoimmune glial fibrillary acidic protein astrocytopathy(GFAP-A),in order to improve the understanding of the disease among clinical physicians.Methods:A retrospective analysis was conducted on the clinical manifestations,imaging examination,laboratory examination of a patient with GFAP-A who was admitted to the First People's Hospital of Yunnan Province and diagnosed on May 11,2023.Results:A female patient with GFAP-A,aged 67 years,presented with meningoencephalomyelitis.The head MRI showed abnormalities,with extensive lesions in the bilateral basal ganglia,pons,and lateral paraventricular white matter areas,and enhancement of the lateral ventricular ependyma and pia mater.Long segment spinal cord abnormal signals were observed,and cerebrospinal fluid anti GFAP antibodies were positive.After hormone treatment,the prognosis was good,and there was no recurrence during follow-up.Conclusion:The main clinical manifestations of GFAP-A are acute or subacute onset meningitis and/or encephalitis,myelitis and meningitis.Detection of autoimmune antibodies in ce-rebrospinal fluid can provide a clear diagnosis,and timely treatment can improve prognosis.
3.Clinical case analysis of an autoimmune glial fibrillary acidic protein astrocytopathy
Xiaoyan WANG ; Zhong ZHAO ; Wenli CHEN ; Niya WANG ; Hao TANG
Chinese Journal of Immunology 2025;41(7):1768-1771
Objective:To summarize the clinical characteristics of autoimmune glial fibrillary acidic protein astrocytopathy(GFAP-A),in order to improve the understanding of the disease among clinical physicians.Methods:A retrospective analysis was conducted on the clinical manifestations,imaging examination,laboratory examination of a patient with GFAP-A who was admitted to the First People's Hospital of Yunnan Province and diagnosed on May 11,2023.Results:A female patient with GFAP-A,aged 67 years,presented with meningoencephalomyelitis.The head MRI showed abnormalities,with extensive lesions in the bilateral basal ganglia,pons,and lateral paraventricular white matter areas,and enhancement of the lateral ventricular ependyma and pia mater.Long segment spinal cord abnormal signals were observed,and cerebrospinal fluid anti GFAP antibodies were positive.After hormone treatment,the prognosis was good,and there was no recurrence during follow-up.Conclusion:The main clinical manifestations of GFAP-A are acute or subacute onset meningitis and/or encephalitis,myelitis and meningitis.Detection of autoimmune antibodies in ce-rebrospinal fluid can provide a clear diagnosis,and timely treatment can improve prognosis.
4.Analyzing ultrasonic manifestations of endometrial polypoid adenomyoma based on international endometrial tumor analysis(IETA)terminology
Niya WEI ; Xiaokun LI ; Yue WANG
Chinese Journal of Medical Imaging Technology 2025;41(2):295-299
Objective To analyze ultrasonic manifestations of endometrial polypoid adenomyoma based on international endometrial tumor analysis(IETA)terminology.Methods Totally 88 patients with endometrial polypoid adenomyoma confirmed by surgery and pathology were retrospectively enrolled,and the ultrasonic manifestations of lesions were analyzed based on IETA terminology.Results The endometrial thickness in 88 cases of endometrial polypoid adenomyoma ranged from 2 to 21 mm,with an average thickness of(9.1±5.0)mm.A total of 93 lesions were detected,72 in uterine cavity and 21 in cervix.Among 93 lesions,homogeneous hyperecho without cyst was observed in 11 lesions with the maximum diameter of(12.3±4.4)mm,homogeneous echo with small cyst was detected in 7 lesions with the maximum diameter of(19.5±8.9)mm,heterogeneous echo without cyst was observed in 18 lesions,heterogeneous echo with regular cysts was found in 32 lesions with the maximum diameter of(25.8±11.2)mm,heterogeneous echo with irregular cysts was found in 21 lesions with the maximum diameter of(29.4±17.5)mm,and the rest 4 were cystic lesions with the maximum diameter of(53.5±19.1)mm.Blood supply patterns of these lesions were mainly unbranched,multi-vessel co-origin and dispersed origin,and the blood flow scores were 1-3 points in most lesions.Conclusion Endometrial polypoid adenomyoma initially presented as uniform hyperechoic mass with uterine cavity.With progressively enlargement,the lesions might develope cystic formations,primarily consisting of multiple small cysts,which could become enlarged,irregular and hypoechoic,and the lesions became heterogeneous and entrapped in cervix.Meanwhile,predominant cystic pattern might be observed in a few lesions.
5.Analyzing ultrasonic manifestations of endometrial polypoid adenomyoma based on international endometrial tumor analysis(IETA)terminology
Niya WEI ; Xiaokun LI ; Yue WANG
Chinese Journal of Medical Imaging Technology 2025;41(2):295-299
Objective To analyze ultrasonic manifestations of endometrial polypoid adenomyoma based on international endometrial tumor analysis(IETA)terminology.Methods Totally 88 patients with endometrial polypoid adenomyoma confirmed by surgery and pathology were retrospectively enrolled,and the ultrasonic manifestations of lesions were analyzed based on IETA terminology.Results The endometrial thickness in 88 cases of endometrial polypoid adenomyoma ranged from 2 to 21 mm,with an average thickness of(9.1±5.0)mm.A total of 93 lesions were detected,72 in uterine cavity and 21 in cervix.Among 93 lesions,homogeneous hyperecho without cyst was observed in 11 lesions with the maximum diameter of(12.3±4.4)mm,homogeneous echo with small cyst was detected in 7 lesions with the maximum diameter of(19.5±8.9)mm,heterogeneous echo without cyst was observed in 18 lesions,heterogeneous echo with regular cysts was found in 32 lesions with the maximum diameter of(25.8±11.2)mm,heterogeneous echo with irregular cysts was found in 21 lesions with the maximum diameter of(29.4±17.5)mm,and the rest 4 were cystic lesions with the maximum diameter of(53.5±19.1)mm.Blood supply patterns of these lesions were mainly unbranched,multi-vessel co-origin and dispersed origin,and the blood flow scores were 1-3 points in most lesions.Conclusion Endometrial polypoid adenomyoma initially presented as uniform hyperechoic mass with uterine cavity.With progressively enlargement,the lesions might develope cystic formations,primarily consisting of multiple small cysts,which could become enlarged,irregular and hypoechoic,and the lesions became heterogeneous and entrapped in cervix.Meanwhile,predominant cystic pattern might be observed in a few lesions.
6.Mechanism of benzo(k)fluoranthene induced reproductive damage in mice based on proteomics and metabolomics analysis
Yawen LI ; Dandan WANG ; Furong WANG ; Niya ZHOU ; Dapeng WANG ; Jia CAO
Journal of Army Medical University 2024;46(13):1523-1534
Objective To explore the potential mechanism of Benzo(K)fluoranthene(BkF)on male reproductive injury in mice by proteomics and metabolomics.Methods Twenty healthy and clean male Kunming mice(6 weeks old,18±2 g)were randomly divided into control group(corn oil group),low-,medium-and high-dose BkF groups(7.5,15.0 and 30.0 mg/kg),with 5 mice in each group.The corresponding agents were gavaged at a dose of 10 mL/kg,5 d per week,for 35 consecutive days.After modeling,the rats were fasted for 10 h,and then sperm samples and testicular tissues were harvested.Computer assisted sperm analysis(CASA)was used to detect and analyze semen parameters.HE staining was employed to observe the histopathological structure of the testicular tissue.Bioinformatics analysis was applied to analyze the differential protein pathways.Volcano plot were conducted to analyze the top 10 differentially expressed proteins(DEPs)in the control and high-dose BkF group.Liquid chromatography-tandem mass spectrometry(LC-MS/MS)untargeted metabolomics techniques were utilized to screen out differential metabolites.KEGG signaling pathway and KEGG annotation analyses and GO enrichment analysis were used to analyze the differential metabolites.Results Compared with the control group,the sperm number and motility of BkF-treated mice showed a decreased trend,with statistical differences(P<0.05).Pathological observation showed that BkF treatment resulted in dilated seminal tubules and badly-arranged spermatogenic cells when compared with the control group.Proteomics analysis found that the protein levels of Spata46 and Rab5b were decreased,while those of Zscan21 and Aifm2 were increased(P<0.01).Proteomic KEGG enrichment analysis showed that it was mainly involved in phagosome,protein export,ribosome and other pathways.GO enrichment analysis indicated that it was mainly involved in male meiosis I,histone acetylation,regulation of p53 signaling pathway,positive regulation of cell cycle,positive regulation of cell death and other signaling pathways.Metabonomics KEGG displayed that amino sugar and nucleotide sugar metabolism were most closely related to other metabolic pathways.Conclusion Proteomics and metabolomics analyses show that BkF exposure is associated with spermatogenesis,apoptosis and cell cycle,DNA damage,amino sugar and nucleotide sugar metabolism.
7.Background, design, and preliminary implementation of China prospective multicenter birth cohort
Si ZHOU ; Liping GUAN ; Hanbo ZHANG ; Wenzhi YANG ; Qiaoling GENG ; Niya ZHOU ; Wenrui ZHAO ; Jia LI ; Zhiguang ZHAO ; Xi PU ; Dan ZHENG ; Hua JIN ; Fei HOU ; Jie GAO ; Wendi WANG ; Xiaohua WANG ; Aiju LIU ; Luming SUN ; Jing YI ; Zhang MAO ; Zhixu QIU ; Shuzhen WU ; Dongqun HUANG ; Xiaohang CHEN ; Fengxiang WEI ; Lianshuai ZHENG ; Xiao YANG ; Jianguo ZHANG ; Zhongjun LI ; Qingsong LIU ; Leilei WANG ; Lijian ZHAO ; Hongbo QI
Chinese Journal of Perinatal Medicine 2024;27(9):750-755
China prospective multicenter birth cohort (Prospective Omics Health Atlas birth cohort, POHA birth cohort) study was officially launched in 2022. This study, in collaboration with 12 participating units, aims to establish a high-quality, multidimensional cohort comprising 20 000 naturally conceived families and assisted reproductive families. The study involves long-term follow-up of parents and offspring, with corresponding biological samples collected at key time points. Through multi-omics testing and analysis, the study aims to conduct multi-omics big data research across the entire maternal and infant life cycle. The goal is to identify new biomarkers for maternal and infant diseases and provide scientific evidence for risk prediction related to maternal diseases and neonatal health.
8.Effects of Culture Mechanism of Cinnamomum kanehirae and C. camphora on the Expression of Genes Related to Terpene Biosynthesis in Antrodia cinnamomea
Zhang ZHANG ; Yi WANG ; Xiao-Long YUAN ; Ya-Na LUO ; Ma-Niya LUO ; Yuan ZHENG
Mycobiology 2022;50(2):121-131
The rare edible and medicinal fungus Antrodia cinnamomea has a substantial potential for development. In this study, Illumina HiSeq 2000 was used to sequence its transcriptome.The results were assembled de novo, and 66,589 unigenes with an N50 of 4413 bp were obtained. Compared with public databases, 6,061, 3,257, and 2,807 unigenes were annotated to the Non-Redundant, Gene Ontology, and Kyoto Encyclopedia of Genes and Genomes databases, respectively. The genes related to terpene biosynthesis in the mycelia of A. cinnamomea were analyzed, and acetyl CoA synthase (ACS2 and ACS4), hydroxymethylglutaryl CoA reductase (HMGR), farnesyl transferase (FTase), and squalene synthase (SQS) were found to be upregulated in XZJ (twig of C. camphora) and NZJ (twig of C. kanehirae). Moreover, ACS5 and 2,3-oxidized squalene cyclase ( OCS) were highly expressed in NZJ, while heme IX farnesyl transferase (IX-FIT) and ACS3 were significantly expressed in XZJ. The differential expression of ACS1, ACS2, HMGR, IX-FIT, SQS, and OCS was confirmed by real-time quantitative reverse transcription PCR. This study provides a new concept for the additional exploration of the molecular regulatory mechanism of terpenoid biosynthesis and data for the biotechnology of terpenoid production.
9.Preconception reproductive health and birth outcome cohort in Chongqing: the cohort profile
Qing CHEN ; Wenzheng ZHOU ; Niya ZHOU ; Huan YANG ; Yimeng WANG ; Haiyan ZHANG ; Qiuhong LI ; Nianrong WANG ; Hongyan CHEN ; Lin AO ; Jinyi LIU ; Ziyuan ZHOU ; Hua ZHANG ; Wei ZHOU ; Hongbo QI ; Jia CAO
Chinese Journal of Epidemiology 2022;43(7):1134-1139
Birth cohort is an important platform to study the effect of early-life exposure on health outcome, but large cohorts to investigate the effect of preconception exposure, especially paternal exposure, on reproductive health and birth outcome are limited. The Preconception Reproductive Health and Birth Outcome Cohort (PREBIC) is a prospective birth cohort study which pays equal attention to the contribution of environmental, psychological, behavioral as well as other factors to reproductive health and adverse birth outcomes in both men and women in Chongqing, China. PREBIC started in 2019 and plans to recruit 20 800 reproductive-age couples with child-bearing willingness. Followed up was conducted to understand the conception status of the women within two years. Women in pregnancy would be visited at first, second, third trimesters and after delivery. The offspring would be monitored until 2 years old to understand the incidences of preterm birth, low birth weight, birth defects, neurodevelopmental disorders and other outcomes. Related information and biospecimen collections (including semen, peripheral blood, urine, placenta, umbilical cord, cord blood and oral swab) were scheduled in each period. By January 2022, PREBIC had recruited 8 698 participants from all 38 districts in Chongqing. The goal of PREBIC is to establish one of the largest prospective preconception birth cohorts covering both men and women, which might provide a unique insight to understand the effects of the full reproductive cycle on reproductive health and adverse outcomes, with especial emphasis on preconception exposures.
10. Effect of sympathetic overactivity on stroke-associated pneumonia
Yang LI ; Baojun WANG ; Niya MA
International Journal of Cerebrovascular Diseases 2019;27(9):696-699
Stroke-associated pneumonia (SAP), the most common infection complication after stroke, may be associated with immunosuppression caused by post-stroke sympathetic system overactivity. This review discusses the relationship between sympathetic overactivity and SAP. In addition, the evaluation method of sympathetic nervous system activity and the application value of adrenergic receptor blockers are also described.

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