1.KRAS, NRAS, and BRAF mutations in plasma cell myeloma at a single Korean institute
Yonggoo KIM ; Sung-Soo PARK ; Chang-Ki MIN ; Gun Dong LEE ; Jungok SON ; SungJin JO ; Eunhee HAN ; Kyungja HAN ; Myungshin KIM
Blood Research 2020;55(3):159-168
Background:
Plasma cell myeloma (PCM) is a genetically heterogeneous disease. The genetic spectrum of PCM has been expanded to mutations such as KRAS, NRAS, and BRAF genes in the RAS-RAF-MAPK pathway. In this study, we have evaluated the frequency of these mutations and their significance, including baseline characteristics and clinical outcomes.
Methods:
We explored 50 patients who were newly diagnosed with PCM between 2009 and 2012 at a single Korean institute. Clinical and laboratory parameters were gathered through careful review of medical records. Mutation analysis was carried out using DNA from the bone marrow at the time of diagnosis. Pyrosequencing was performed to detect KRAS G12V,KRASG13D, and NRAS G61R. BRAF V600E was analyzed by allele-specific real-time PCR. Comparison of clinical and laboratory parameters was carried out according to those mutations.
Results:
We identified 14 patients (28%) with activating mutations in the RAS-RAF-MAPK pathway (RAS/RAF mutations):KRAS (N=3), KRAS (N=4),BRAF (N=7), and both KRAS and BRAF (N=1). RAS/RAF mutations were more frequently observed in patients with complex karyotypes and showed poorer progression free survival (PFS). Specifically, the BRAF V600E mutation had a significantly negative impact on median PFS.
Conclusion
We first showed the frequency of RAS/RAF mutations in Korean patients with PCM.Screening of these mutations could be considered as a routine clinical test at the time of diagnosis and follow-up due to their influence on clinical outcome, as well as its potential as a therapeutic target.
2.Reclassification of Acute Myeloid Leukemia According to the 2016 WHO Classification
Jin JUNG ; Byung Sik CHO ; Hee Je KIM ; Eunhee HAN ; Woori JANG ; Kyungja HAN ; Jae Wook LEE ; Nack Gyun CHUNG ; Bin CHO ; Myungshin KIM ; Yonggoo KIM
Annals of Laboratory Medicine 2019;39(3):311-316
We reviewed our leukemia database to reclassify 610 patients previously diagnosed as having acute myeloid leukemia (AML) according to the updated 2016 WHO classification. Nine patients were categorized as having myelodysplastic syndrome and myeloid neoplasms with germline predisposition. AML with recurrent genetic abnormalities accounted for 57.4% (345/601) of the patients under the 2016 WHO classification. AML with mutated NPM1 was the most common form (16.5%), with the majority associated with monocytic differentiation (63.6%). AML with double CEBPA mutations accounted for 8.3% of these cases, and the majority were previously diagnosed as AML with/without maturation (78.0%). These newly classified mutations were mutually exclusive without overlapping with other forms of AML with recurrent genetic abnormalities. AML with mutated NPM1 and AML with myelodysplasia-related changes comprised the oldest patients, whereas AML with RUNX1-RUNX1T1 included the youngest patients. The leukocyte count was highest in AML with mutated NPM1, and the percentage of peripheral blood blasts was the highest in AML with double CEBPA mutations. Our results indicate that implementation of the 2016 WHO classification of AML would not pose major difficulties in clinical practice. Hematopathologists should review and prepare genetic tests for the new classification, according to their clinical laboratory conditions.
Classification
;
Humans
;
Leukemia
;
Leukemia, Myeloid, Acute
;
Leukocyte Count
;
Myelodysplastic Syndromes
3.Multicenter Comparison of Four Automated Immunoassay Analyzers for Prostate Specific Antigen
Dong Jin PARK ; Yeongsic KIM ; Hae Kyung LEE ; Jehoon LEE ; Kyungja HAN ; Hi Jeong KWON
Annals of Laboratory Medicine 2019;39(4):406-410
No abstract available.
Immunoassay
;
Prostate
;
Prostate-Specific Antigen
4.Two Korean Cases of Hereditary Spherocytosis Caused by Mutations in SLC4A1.
Hanwool CHO ; Jae Wook LEE ; Nack Gyun CHUNG ; Sung Eun LEE ; Woori JANG ; Myungshin KIM ; Kyungja HAN ; Yonggoo KIM
Laboratory Medicine Online 2018;8(3):114-118
Hereditary spherocytosis (HS) is caused by mutations in the SPTA1, SPTB, ANK1, SLC4A1, and EPB42 genes, all of which encode erythrocyte membrane proteins. Mutations in SLC4A1, which encodes band 3 protein, have rarely been reported as the causative factor among Korean patients with HS. Here, we report two Korean patients with HS carrying mutations in SLC4A1. Patient 1 was a 3-year-old girl with unremarkable past and family histories and was evaluated for anemia that was detected after a complete blood count. She was suspected of having HS considering the spherocytosis of her peripheral blood smear, increased osmotic fragility, hemolytic features in blood chemistry tests, and splenomegaly. Sequence analysis revealed that the patient harbored a single heterozygous missense mutation, c.2278C>T (p.Arg760Trp) in exon 17 of SLC4A1. Patient 2 was a 23-year-old man who had a prior history of intermittent jaundice. Although the patient did not have anemia, a genetic test for HS was performed due to evidence of hemolytic features in the blood chemistry test, splenomegaly, and a family history of HS. The test confirmed a single heterozygous missense mutation, c.2423G>T (p.Arg808Leu) in exon 18 of SLC4A1.
Anemia
;
Anion Exchange Protein 1, Erythrocyte
;
Blood Cell Count
;
Chemistry
;
Child, Preschool
;
Erythrocyte Membrane
;
Exons
;
Female
;
Humans
;
Jaundice
;
Mutation, Missense
;
Osmotic Fragility
;
Sequence Analysis
;
Splenomegaly
;
Young Adult
5.PCM1-JAK2 Fusion in a Patient With Acute Myeloid Leukemia.
Jong Mi LEE ; Jaewoong LEE ; Eunhee HAN ; Myungshin KIM ; Yonggoo KIM ; Kyungja HAN ; Hee Je KIM
Annals of Laboratory Medicine 2018;38(5):492-494
No abstract available.
Humans
;
Leukemia, Myeloid, Acute*
6.Development of a Rapid Automated Fluorescent Lateral Flow Immunoassay to Detect Hepatitis B Surface Antigen (HBsAg), Antibody to HBsAg, and Antibody to Hepatitis C.
Ji Hyeong RYU ; Minsuk KWON ; Joung Dae MOON ; Min Woong HWANG ; Jeong Min LEE ; Ki Hyun PARK ; So Jeong YUN ; Hyun Jin BAE ; Aeran CHOI ; Hyeyoung LEE ; Bongsu JUNG ; Juhee JEONG ; Kyungja HAN ; Yonggoo KIM ; Eun Jee OH
Annals of Laboratory Medicine 2018;38(6):578-584
BACKGROUND: Accurate, rapid, and cost-effective screening tests for hepatitis B virus (HBV) and hepatitis C virus (HCV) infection may be useful in laboratories that cannot afford automated chemiluminescent immunoassays (CLIAs). We evaluated the diagnostic performance of a novel rapid automated fluorescent lateral flow immunoassay (LFIA). METHODS: A fluorescent LFIA using a small bench-top fluorescence reader, Automated Fluorescent Immunoassay System (AFIAS; Boditech Med Inc., Chuncheon, Korea), was developed for qualitative detection of hepatitis B surface antigen (HBsAg), antibody to HBsAg (anti-HBs), and antibody to HCV (anti-HCV) within 20 minutes. We compared the diagnostic performance of AFIAS with that of automated CLIAs—Elecsys (Roche Diagnostics GmbH, Penzberg, Germany) and ARCHITECT (Abbott Laboratories, Abbott Park, IL, USA)—using 20 seroconversion panels and 3,500 clinical serum samples. RESULTS: Evaluation with the seroconversion panels demonstrated that AFIAS had adequate sensitivity for HBsAg and anti-HCV detection. From the clinical samples, AFIAS sensitivity and specificity were 99.8% and 99.3% for the HBsAg test, 100.0% and 100.0% for the anti-HBs test, and 98.8% and 99.1% for the anti-HCV test, respectively. Its agreement rates with the Elecsys HBsAg, anti-HBs, and anti-HCV detection assays were 99.4%, 100.0%, and 99.0%, respectively. AFIAS detected all samples with HBsAg genotypes A-F and H and anti-HCV genotypes 1, 1a, 1b, 2a, 2b, 4, and 6. Cross-reactivity with other infections was not observed. CONCLUSIONS: The AFIAS HBsAg, anti-HBs, and anti-HCV tests demonstrated diagnostic performance equivalent to current automated CLIAs. AFIAS could be used for a large-scale HBV or HCV screening in low-resource laboratories or low-to middle-income areas.
Fluorescence
;
Gangwon-do
;
Genotype
;
Hepacivirus
;
Hepatitis B Surface Antigens*
;
Hepatitis B virus
;
Hepatitis B*
;
Hepatitis C*
;
Hepatitis*
;
Immunoassay*
;
Mass Screening
;
Sensitivity and Specificity
;
Seroconversion
7.Comparison of Four Automated Carcinoembryonic Antigen Immunoassays: ADVIA Centaur XP, ARCHITECT I2000sr, Elecsys E170, and Unicel Dxi800.
Joonhong PARK ; Seungok LEE ; Yeongsic KIM ; Aeran CHOI ; Hyeyoung LEE ; Jihyang LIM ; Yonggoo KIM ; Kyungja HAN ; Eun Jee OH
Annals of Laboratory Medicine 2018;38(4):355-361
BACKGROUND: Carcinoembryonic antigen (CEA) is one of the tumor markers available for evaluating disease progression status after initial therapy and monitoring subsequent treatment modalities in colorectal, gastrointestinal, lung, and breast carcinoma. We evaluated the correlations and differences between widely used, automated CEA immunoassays at four different medical laboratories. METHODS: In total, 393 serum samples with CEA ranging from 3.0 to 1,000 ng/mL were analyzed on ADVIA Centaur XP (Siemens Diagnostics, Tarrytown, NY, USA), ARCHITECT i2000sr (Abbott Diagnostics, Abbott Park, IL, USA), Elecsys E170 (Roche Diagnostics, Indianapolis, IN, USA), and Unicel DxI800 (Beckman Coulter, Fullerton, CA, USA), and the results were compared. Deming regression, Passing-Bablok regression, and Bland-Altman analyses were performed to evaluate the data correlation and % differences among these assays. RESULTS: Deming regression analysis of data from Elecsys E170 and UniCel DxI800 showed good correlation (y=3.1615+0.8970x). According to Bland-Altman plot, no statistically significant bias (−1.78 ng/mL [95% confidence interval: −4.02 to 0.46]) was observed between Elecsys E170 and UniCel DxI800. However, the relative differences of CEA concentrations between assays exceeded the acceptable limit of 30%. Regarding the agreement of positivity with cut-off value 5.0 ng/mL, ARCHITECT i2000sr and Elecsys E170 showed the highest agreement (95.2%), whereas ADVIA Centaur XP and ARCHITECT i2000sr showed the lowest agreement (70.7%). CONCLUSIONS: Agreements between automated CEA immunoassays are variable, and individual CEA concentrations may differ significantly between assays. Standardization of serum CEA concentrations and further harmonization are needed.
Bias (Epidemiology)
;
Biomarkers, Tumor
;
Breast Neoplasms
;
Carcinoembryonic Antigen*
;
Disease Progression
;
Immunoassay*
;
Lung
;
Statistics as Topic
10.Direct Identification and Antimicrobial Susceptibility Testing of Bacteria From Positive Blood Culture Bottles by Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry and the Vitek 2 System.
Sung Jin JO ; Kang Gyun PARK ; Kyungja HAN ; Dong Jin PARK ; Yeon Joon PARK
Annals of Laboratory Medicine 2016;36(2):117-123
BACKGROUND: We evaluated the reliability and accuracy of the combined use of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) bacterial identification and Vitek 2 antimicrobial susceptibility testing (AST) for bacteria from positive blood culture bottles. METHODS: Direct identification and AST were performed in parallel to the standard methods in monomicrobial positive blood culture bottles. In total, 254 isolates grown on aerobic and/or anaerobic bottles were identified with MALDI-TOF Vitek MS (bioMerieux, France), and 1,978 microorganism/antimicrobial agent combinations were assessed. For isolates from anaerobic bottles, an aliquot of the culture broth was centrifuged, washed, and filtered through a nylon mesh. For isolates from aerobic/pediatric bottles, a lysis step using 9.26% ammonium chloride solution and 2% saponin solution was included. RESULTS: The overall correct identification rate was 81.8% (208/254) and that for gram-positive/gram-negative isolates was 73.9%/92.6%, respectively, and it was 81.8%, 87.6%, and 57.9% for isolates from aerobic, anaerobic, and pediatric bottles, respectively. Identification was not possible in 45 cases, and most of these isolates were streptococci (N=14) and coagulase-negative staphylococci (N=11). Misidentification occurred only in one case. Compared with standard methods, direct AST showed 97.9% (1,936/1,978) agreement with very major error of 0.25%, major error of 0.05%, and minor error of 1.8%. CONCLUSIONS: This simple and cost-effective sample preparation method gives reliable results for the direct identification and AST of bacteria. For the identification of streptococci and coagulase-negative staphylococci, the method should be further improved.
Adult
;
Ammonium Chloride/chemistry
;
Anti-Infective Agents/*pharmacology
;
Child
;
Gram-Negative Bacteria/drug effects/*isolation & purification/metabolism
;
Gram-Positive Bacteria/drug effects/*isolation & purification/metabolism
;
Humans
;
Reagent Kits, Diagnostic
;
Saponins/chemistry
;
*Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization

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