1.Identification of Preeclamptic Placenta in Whole Slide Images Using Artificial Intelligence Placenta Analysis
Young Mi JUNG ; Seyeon PARK ; Youngbin AHN ; Haeryoung KIM ; Eun Na KIM ; Hye Eun PARK ; Sun Min KIM ; Byoung Jae KIM ; Jeesun LEE ; Chan-Wook PARK ; Joong Shin PARK ; Jong Kwan JUN ; Young-Gon KIM ; Seung Mi LEE
Journal of Korean Medical Science 2024;39(39):e271-
Background:
Preeclampsia (PE) is a hypertensive pregnancy disorder linked to placental dysfunction, often involving pathological lesions like acute atherosis, decidual vasculopathy, accelerated villous maturation, and fibrinoid deposition. However, there is no gold standard for the pathological diagnosis of PE and this limits the ability of clinicians to distinguish between PE and non-PE pregnancies. Recent advances in computational pathology have provided the opportunity to automate pathological analysis for diagnosis, classification, prediction, and prediction of disease progression. In this study, we assessed whether computational pathology could be used to identify PE placentas.
Methods:
A total of 168 placental whole-slide images (WSIs) of patients from Seoul National University Hospital (comprising 84 PE cases and 84 normal controls) were used for model development and internal validation. For external validation of the model, 76 placental slides (including 38 PE cases and 38 normal controls) were obtained from the Boramae Medical Center (BMC). To establish standard criteria for diagnosing PE and distinguishing it from controls using placental WSIs, patch characteristics and quantification of terminal and intermediate villi were employed. In unsupervised learning, K-means clustering was conducted as a feature obtained through an Auto Encoder to extract the ratio of each cluster for each WSI. For supervised learning, quantitative assessments of the villi were obtained using a U-Net-based segmentation algorithm. The prediction model was developed using an ensemble method and was compared with a clinical feature model developed by using placental size features.
Results:
Using ensemble modeling, we developed a model to identify PE placentas.The model showed good performance (area under the precision-recall curve [AUPRC], 0.771; 95% confidence interval [CI], 0.752–0.790), with 77.3% of sensitivity and 71.1% of specificity, whereas the clinical feature model showed an AUPRC 0.713 (95% CI, 0.694–0.732) with 55.6% sensitivity and 86.8% specificity. External validation of the predictive model employing the BMC-derived set of placental slides also showed good discrimination (AUPRC, 0.725; 95% CI, 0.720–0.730).
Conclusion
The proposed computational pathology model demonstrated a strong ability to identify preeclamptic placentas. Computational pathology has the potential to improve the identification of PE placentas.
2.Impact of Diabetes Control on Subclinical Atherosclerosis: Analysis from Coronary Computed Tomographic Angiography Registry
Gyung-Min PARK ; Chang Hoon LEE ; Seung-Whan LEE ; Sung-Cheol YUN ; Young-Hak KIM ; Yong-Giun KIM ; Ki-Bum WON ; Soe Hee ANN ; Shin-Jae KIM ; Dong Hyun YANG ; Joon-Won KANG ; Tae-Hwan LIM ; Eun Hee KOH ; Woo Je LEE ; Min-Seon KIM ; Joong-Yeol PARK ; Hong-Kyu KIM ; Jaewon CHOE ; Sang-Gon LEE
Diabetes & Metabolism Journal 2020;44(3):470-479
There are limited data on the impact of diabetes control on the risk of subclinical coronary atherosclerosis. We analyzed 6,434 consecutive asymptomatic individuals without previous history of coronary artery disease who underwent coronary computed tomographic angiography (CCTA) (mean age, 53.7±7.6 years and 4,694 men [73.0%]). The degree and extent of subclinical coronary atherosclerosis were assessed by CCTA, and ≥50% diameter stenosis was defined as significant. A cardiac event was defined as a composite of all-cause death, myocardial infarction, unstable angina, or coronary revascularization. Study participants were categorized as normal ( Compared with normal individuals, there were no statistically significant differences in the risk of for any atherosclerotic plaque (odds ratio [OR], 1.16; 95% confidence interval [CI], 0.98 to 1.38; Asymptomatic uncontrolled diabetes was associated with significant subclinical coronary atherosclerosis with subsequent high risk for cardiac events.
3.Gender-Specific Associations between CHGB Genetic Variants and Schizophrenia in a Korean Population.
Joong Gon SHIN ; Jeong Hyun KIM ; Chul Soo PARK ; Bong Jo KIM ; Jae Won KIM ; Ihn Geun CHOI ; Jaeuk HWANG ; Hyoung Doo SHIN ; Sung Il WOO
Yonsei Medical Journal 2017;58(3):619-625
PURPOSE: Schizophrenia is a devastating mental disorder and is known to be affected by genetic factors. The chromogranin B (CHGB), a member of the chromogranin gene family, has been proposed as a candidate gene associated with the risk of schizophrenia. The secretory pathway for peptide hormones and neuropeptides in the brain is regulated by chromogranin proteins. The aim of this study was to investigate the potential associations between genetic variants of CHGB and schizophrenia susceptibility. MATERIALS AND METHODS: In the current study, 15 single nucleotide polymorphisms of CHGB were genotyped in 310 schizophrenia patients and 604 healthy controls. RESULTS: Statistical analysis revealed that two genetic variants (non-synonymous rs910122; rs2821 in 3′-untranslated region) were associated with schizophrenia [minimum p=0.002; odds ratio (OR)=0.72], even after correction for multiple testing (p(corr)=0.02). Since schizophrenia is known to be differentially expressed between sexes, additional analysis for sex was performed. As a result, these two genetic variants (rs910122 and rs2821) and a haplotype (ht3) showed significant associations with schizophrenia in male subjects (p(corr)=0.02; OR=0.64), whereas the significance disappeared in female subjects (p>0.05). CONCLUSION: Although this study has limitations including a small number of samples and lack of functional study, our results suggest that genetic variants of CHGB may have sex-specific effects on the risk of schizophrenia and provide useful preliminary information for further study.
Brain
;
Chromogranin B
;
Female
;
Haplotypes
;
Humans
;
Male
;
Mental Disorders
;
Neuropeptides
;
Odds Ratio
;
Peptide Hormones
;
Polymorphism, Single Nucleotide
;
Schizophrenia*
;
Secretory Pathway
4.Targeted busulfan and fludarabine-based conditioning for bone marrow transplantation in chronic granulomatous disease.
Hee Young JU ; Hyoung Jin KANG ; Che Ry HONG ; Ji Won LEE ; Hyery KIM ; Sang Hoon SONG ; Kyung Sang YU ; In Jin JANG ; June Dong PARK ; Kyung Duk PARK ; Hee Young SHIN ; Joong Gon KIM ; Hyo Seop AHN
Korean Journal of Pediatrics 2016;59(Suppl 1):S57-S59
Chronic granulomatous disease (CGD) is a primary immunodeficiency disease caused by impaired phagocytic function. Hematopoietic stem cell transplantation (HSCT) is a definitive cure for CGD; however, the use of HSCT is limited because of associated problems, including transplantation-related mortality and engraftment failure. We report a case of a patient with CGD who underwent successful HSCT following a targeted busulfan and fludarabine reduced-toxicity myeloablative conditioning. Intravenous busulfan was administered once daily for 4 consecutive days (days –8 to –5), and the target area under the curve was 75,000 µg·hr/L. Fludarabine (40 mg/m2) was administered once daily for 6 consecutive days from days –8 to –3. Antithymocyte globulin (2.5 mg/kg/day) was administered from days –4 to –2. The patient underwent successful engraftment and did not have any severe toxicity related to the transplantation. Conditioning with a targeted busulfan and fludarabine regimen could provide a better outcome for HSCT in CGD, with close regulation of the busulfan dose.
Antilymphocyte Serum
;
Bone Marrow Transplantation*
;
Bone Marrow*
;
Busulfan*
;
Granulomatous Disease, Chronic*
;
Hematopoietic Stem Cell Transplantation
;
Humans
;
Mortality
;
Transplantation Conditioning
5.Myofascial pain syndrome of gluteus minimus mimicking lumbar radiculitis: A case report.
Joong Ho PARK ; Kwang Suk SHIM ; Young Min SHIN ; Chiu LEE ; Sang Gon LEE ; Eun Ju KIM
Anesthesia and Pain Medicine 2015;10(1):16-20
Myofascial pain syndrome (MPS) can be characterized by pain caused by trigger points (TrPs) and fascial constrictions. Patients with MPS of the gluteus minimus muscles often complain of symptoms such as hip pain, especially when standing up after sitting or lying on the affected side, limping, and pain radiating down to the lower extremities. A 24-year-old female patient presenting with motor and sensory impairments of both lower extremities was referred to our pain clinic after initially being diagnosed with lumbar radiculitis. Under the impression of MPS of the gluteus minimus muscles following through evaluation and physical examination of the patient, we performed trigger point injections under ultrasonography guidance on the myofascial TrPs. Dramatic improvement of the patient's symptoms was observed following this treatment, and she was discharged without any further remaining symptoms.
Constriction
;
Deception
;
Female
;
Hip
;
Humans
;
Lower Extremity
;
Muscles
;
Myofascial Pain Syndromes*
;
Pain Clinics
;
Physical Examination
;
Radiculopathy*
;
Trigger Points
;
Ultrasonography
;
Young Adult
6.Screening of Dihydropyrimidine Dehydrogenase Genetic Variants by Direct Sequencing in Different Ethnic Groups.
Joong Gon SHIN ; Hyun Sub CHEONG ; Jason Yongha KIM ; Lyoung Hyo KIM ; Chang Soo HAN ; Ji On KIM ; Hae Deun KIM ; Young Hoon KIM ; Myeon Woo CHUNG ; Soon Young HAN ; Hyoung Doo SHIN
Journal of Korean Medical Science 2013;28(8):1129-1133
Dihydropyrimidine dehydrogenase (DPYD) is an enzyme that regulates the rate-limiting step in pyrimidine metabolism, especially catabolism of fluorouracil, a chemotherapeutic agent for cancer. In order to determine the genetic distribution of DPYD, we directly sequenced 288 subjects from five ethnic groups (96 Koreans, 48 Japanese, 48 Han Chinese, 48 African Americans, and 48 European Americans). As a result, 56 polymorphisms were observed, including 6 core polymorphisms and 18 novel polymorphisms. Allele frequencies were nearly the same across the Asian populations, Korean, Han Chinese and Japanese, whereas several SNPs showed different genetic distributions between Asians and other ethnic populations (African American and European American). Additional in silico analysis was performed to predict the function of novel SNPs. One nonsynonymous SNP (+199381A > G, Asn151Asp) was predicted to change its polarity of amino acid (Asn, neutral to Asp, negative). These findings would be valuable for further research, including pharmacogenetic and drug responses studies.
African Americans/genetics
;
Alleles
;
Amino Acids/metabolism
;
Asian Continental Ancestry Group/genetics
;
Dihydrouracil Dehydrogenase (NADP)/*genetics
;
Ethnic Groups/*genetics
;
European Continental Ancestry Group/genetics
;
Fluorouracil/metabolism
;
Gene Frequency
;
Genotype
;
Humans
;
Polymorphism, Single Nucleotide
;
Sequence Analysis, DNA
7.Screening of Dihydropyrimidine Dehydrogenase Genetic Variants by Direct Sequencing in Different Ethnic Groups.
Joong Gon SHIN ; Hyun Sub CHEONG ; Jason Yongha KIM ; Lyoung Hyo KIM ; Chang Soo HAN ; Ji On KIM ; Hae Deun KIM ; Young Hoon KIM ; Myeon Woo CHUNG ; Soon Young HAN ; Hyoung Doo SHIN
Journal of Korean Medical Science 2013;28(8):1129-1133
Dihydropyrimidine dehydrogenase (DPYD) is an enzyme that regulates the rate-limiting step in pyrimidine metabolism, especially catabolism of fluorouracil, a chemotherapeutic agent for cancer. In order to determine the genetic distribution of DPYD, we directly sequenced 288 subjects from five ethnic groups (96 Koreans, 48 Japanese, 48 Han Chinese, 48 African Americans, and 48 European Americans). As a result, 56 polymorphisms were observed, including 6 core polymorphisms and 18 novel polymorphisms. Allele frequencies were nearly the same across the Asian populations, Korean, Han Chinese and Japanese, whereas several SNPs showed different genetic distributions between Asians and other ethnic populations (African American and European American). Additional in silico analysis was performed to predict the function of novel SNPs. One nonsynonymous SNP (+199381A > G, Asn151Asp) was predicted to change its polarity of amino acid (Asn, neutral to Asp, negative). These findings would be valuable for further research, including pharmacogenetic and drug responses studies.
African Americans/genetics
;
Alleles
;
Amino Acids/metabolism
;
Asian Continental Ancestry Group/genetics
;
Dihydrouracil Dehydrogenase (NADP)/*genetics
;
Ethnic Groups/*genetics
;
European Continental Ancestry Group/genetics
;
Fluorouracil/metabolism
;
Gene Frequency
;
Genotype
;
Humans
;
Polymorphism, Single Nucleotide
;
Sequence Analysis, DNA
8.Prevalence of Primary Immunodeficiency in Korea.
Jung Woo RHIM ; Kyung Hyo KIM ; Dong Soo KIM ; Bong Seong KIM ; Jung Soo KIM ; Chang Hwi KIM ; Hwang Min KIM ; Hee Ju PARK ; Ki Soo PAI ; Byong Kwan SON ; Kyung Sue SHIN ; Moo Young OH ; Young Jong WOO ; Young YOO ; Kun Soo LEE ; Kyung Yil LEE ; Chong Guk LEE ; Joon Sung LEE ; Eun Hee CHUNG ; Eun Hwa CHOI ; Youn Soo HAHN ; Hyun Young PARK ; Joong Gon KIM
Journal of Korean Medical Science 2012;27(7):788-793
This study represents the first epidemiological study based on the national registry of primary immunodeficiencies (PID) in Korea. Patient data were collected from 23 major hospitals. A total of 152 patients with PID (under 19 yr of age), who were observed from 2001 to 2005, have been entered in this registry. The period prevalence of PID in Korea in 2005 is 11.25 per million children. The following frequencies were found: antibody deficiencies, 53.3% (n = 81), phagocytic disorders, 28.9% (n = 44); combined immunodeficiencies, 13.2% (n = 20); and T cell deficiencies, 4.6% (n = 7). Congenital agammaglobulinemia (n = 21) and selective IgA deficiency (n = 21) were the most frequently reported antibody deficiency. Other reported deficiencies were common variable immunodeficiencies (n = 16), X-linked agammaglobulinemia (n = 15), IgG subclass deficiency (n = 4). Phagocytic disorder was mostly chronic granulomatous disease. A small number of patients with Wiskott-Aldrich syndrome, hyper-IgE syndrome, and severe combined immunodeficiency were also registered. Overall, the most common first manifestation was pneumonia. This study provides data that permit a more accurate estimation PID patients in Korea.
Adolescent
;
Agammaglobulinemia/congenital/epidemiology
;
Age Distribution
;
Child
;
Child, Preschool
;
Common Variable Immunodeficiency/epidemiology
;
Female
;
Genetic Diseases, X-Linked/epidemiology
;
Humans
;
IgA Deficiency/epidemiology
;
IgG Deficiency/epidemiology
;
Immunologic Deficiency Syndromes/*epidemiology
;
Infant
;
Infant, Newborn
;
Job's Syndrome/epidemiology
;
Male
;
Prevalence
;
Questionnaires
;
Registries
;
Republic of Korea/epidemiology
;
Severe Combined Immunodeficiency/epidemiology
;
Sex Distribution
;
Wiskott-Aldrich Syndrome/epidemiology
;
Young Adult
9.Association of the Superoxide Dismutase (V16A) and Catalase (C262T) Genetic Polymorphisms with the Clinical Outcome of Patients with Acute Paraquat Intoxication.
Joong Rock HONG ; Su Jin SEOK ; Du Shin JEONG ; Sang Gon LEE ; Hyo Wook GIL ; Jong Oh YANG ; Eun Young LEE ; Sae Yong HONG
The Korean Journal of Internal Medicine 2010;25(4):422-428
BACKGROUND/AIMS: Many patients with acute paraquat (PQ) intoxication die even at low PQ concentrations, whereas others with similar concentrations recover. Therefore, it is possible that individual differences in antioxidant capacity are responsible for the variable clinical outcome in patients with acute PQ intoxication. METHODS: We investigated whether there was a relationship between the genetic polymorphisms of SOD (V16A), catalase (C262T), and GPX1 (C593T) in 62 patients with acute PQ intoxication and the clinical outcomes of these patients. RESULTS: The frequency of the Mn-SOD V/V, V/A, and A/A genotypes were 56.3, 43.5, and 0% in survivors and 86.9, 13.1, and 0% in non-survivors (p > 0.05). The GPX1 C/C, C/T, and T/T genotypes were present in 100, 0, and 0% of all subjects. The catalase C/C, C/T, and T/T genotypes were present in 100, 0, and 0% of survivors, and in 82.6, 17.4, and 0% of non-survivors. Neither erythrocyte SOD activity nor catalase activity were significantly different between survivors and non-survivors. CONCLUSIONS: No association was found between clinical outcome of acute PQ intoxication and the genetic polymorphism of GPX1 (C593T) or the genetic polymorphisms or enzyme activity of superoxide dismutase (V16A) or catalase (C262T).
Acute Disease
;
Adult
;
Aged
;
Catalase/*genetics
;
Female
;
Genotype
;
Glutathione Peroxidase/genetics
;
Humans
;
Male
;
Middle Aged
;
Paraquat/*poisoning
;
Poisoning/mortality
;
*Polymorphism, Genetic
;
Superoxide Dismutase/*genetics
10.Unrelated Bone Marrow Transplantation with a Reduced Toxicity Myeloablative Conditioning Regimen in Wiskott-Aldrich Syndrome.
Hyoung Jin KANG ; Hee Young SHIN ; Sun Hie KO ; Jeong Ah PARK ; Eun Kyung KIM ; Jung Woo RHIM ; Joong Gon KIM ; Hyo Seop AHN
Journal of Korean Medical Science 2008;23(1):146-148
Wiskott-Aldrich syndrome (WAS) is an X-linked congenital immune-deficiency syndrome, and bone marrow transplantation (BMT) has become a curative modality. However, the transplant with the alternative donor needed more intensive conditioning with increased treatment-related toxicities. Recently, fludarabine-based reduced toxicity myeloablative conditioning regimens have been developed for adult myeloid malignancies with promising results of good engraftment and low treatment-related toxicities. To increase the engraftment potential without serious complications, a boy with WAS received successful unrelated BMT with a reduced toxicity myeloablative conditioning regimen composed of fludarabine (40 mg/m(2) on days -8, -7, -6, -5, -4, -3), busulfan (0.8 mg/kg i. v. q 6 hr on days -6, -5, -4, -3), and thymoglobulin (2.5 mg/kg on days -4, -3, -2). This novel conditioning regimen could improve the outcome of allogeneic transplantation for other non-malignant diseases such as congenital immune-deficiency syndromes or metabolic storage diseases.
*Bone Marrow Transplantation/adverse effects
;
Child, Preschool
;
Graft vs Host Disease/etiology
;
Humans
;
Male
;
*Transplantation Conditioning
;
Wiskott-Aldrich Syndrome/*surgery

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