1.Feasibility of fully automated classification of whole slide images based on deep learning
Kyung Ok CHO ; Sung Hak LEE ; Hyun Jong JANG
The Korean Journal of Physiology and Pharmacology 2020;24(1):89-99
Although microscopic analysis of tissue slides has been the basis for disease diagnosis for decades, intra- and inter-observer variabilities remain issues to be resolved. The recent introduction of digital scanners has allowed for using deep learning in the analysis of tissue images because many whole slide images (WSIs) are accessible to researchers. In the present study, we investigated the possibility of a deep learning-based, fully automated, computer-aided diagnosis system with WSIs from a stomach adenocarcinoma dataset. Three different convolutional neural network architectures were tested to determine the better architecture for tissue classifier. Each network was trained to classify small tissue patches into normal or tumor. Based on the patch-level classification, tumor probability heatmaps can be overlaid on tissue images. We observed three different tissue patterns, including clear normal, clear tumor and ambiguous cases. We suggest that longer inspection time can be assigned to ambiguous cases compared to clear normal cases, increasing the accuracy and efficiency of histopathologic diagnosis by pre-evaluating the status of the WSIs. When the classifier was tested with completely different WSI dataset, the performance was not optimal because of the different tissue preparation quality. By including a small amount of data from the new dataset for training, the performance for the new dataset was much enhanced. These results indicated that WSI dataset should include tissues prepared from many different preparation conditions to construct a generalized tissue classifier. Thus, multi-national/multi-center dataset should be built for the application of deep learning in the real world medical practice.
Adenocarcinoma
;
Classification
;
Dataset
;
Diagnosis
;
Learning
;
Observer Variation
;
Stomach
2.Clinical Features, Disability and Socioeconomic Status of Patients With Muscular Dystrophy in Korea.
Seung Hun OH ; Dae Ryong KANG ; Young Chul CHOI ; Byung Ok CHOI ; Dae Seong KIM ; Du Shin JEONG ; Kyung Seok PARK ; Ki Tae MOON ; Seung Min KIM ; Byoung Joon KIM ; Jeong Geun LIM ; In Soo JOO ; Jeong Hee CHO ; Jin Ho KIM ; Eun Hee SOHN ; Hak Jae ROH ; Jong Kuk KIM ; Yeong Bae LEE ; Nam Hee KIM ; Bum Chun SUH
Journal of the Korean Neurological Association 2009;27(4):320-331
BACKGROUND: Since 2001, the Ministry of Health and Welfare in Korea has designated muscular dystrophy (MD) to be a rare and intractable disease, and has ensured that patients with this condition obtain support from the National Health Insurance Corporation for their medical expenditure. However, the health-related and socioeconomic status of Korean patients with MD has yet to be established. METHODS: We selected 441 patients with MD who received medical services at 17 neuromuscular centers during 2005. The medical records of selected patients were analyzed, and the subtype of MD was classified by its clinical course and diagnostic tests. A total of 95 patients or their family members participated in this health-related and socioeconomic status survey. RESULTS: Medical record analysis showed similar clinical and diagnostic characteristic data to those published previously in other countries: male predominance, being young at onset, and muscular weakness of the extremities as a predominant symptom in most patients. The diagnostic tests for MD were based on laboratory and electrophysiological studies. The most frequent form of MD among our cohort was Duchenne/Becker muscular dystrophy (42%). Our survey revealed the effect of the patients' profound disability on their activities of daily living. One-half of the patients were dissatisfied with the medical expenditure support service that was made available to them, and most patients suffered from a financial burden. The most important medical services to be developed in the future are expansion of the public health service or development of a rehabilitation hospital. CONCLUSIONS: This is the first multicenter-based epidemiologic study on the health-related and socioeconomic status of patients with MD in Korea. The findings indicate that medical coverage and public health service are currently inadequate and hence should be expanded in the future.
Activities of Daily Living
;
Cohort Studies
;
Diagnostic Tests, Routine
;
Epidemiologic Studies
;
Extremities
;
Health Expenditures
;
Humans
;
Korea
;
Male
;
Medical Records
;
Morphinans
;
Muscle Weakness
;
Muscular Dystrophies
;
National Health Programs
;
Social Class
;
United States Public Health Service
3.The Effects of Indoor Air Quality on the Neurobehavioral Performance of Elementary School Children.
Dae Seop KIM ; Sun Ju KIM ; Si Young PARK ; Man Joong JEON ; Gyu Tae KIM ; Chang Yoon KIM ; Jong Hak CHUNG ; Sung Ok BAEK ; Joon SAKONG
Korean Journal of Occupational and Environmental Medicine 2007;19(1):65-72
OBJECTIVES: Most studies on the indoor air quality of newly built schools have focused only on the number of schools exceeding a standard or on subjective symptoms, such as sneezing, irritated eyes and an irritated nose. However, there has been no report on how poor indoor air quality affects children's academic performance. This study evaluated the effects of indoor air quality on the neurobehavioral performance of elementary school children. METHODS: This study measured the indoor air pollutants and compared children's performance, using a computerized neurobehavioral test, between a newly built and a 12-year-old school. In addition, a questionnaire was administered regarding the indoor air quality related symptoms of children in a newly built and a 12-year-old school. RESULTS: In the newly built school, the formaldehyde levels in the 1st and 4th classes with an open window were 34.6 and 27.3 microgram/m3, respectively. The levels in the 1st and 4th classes with the window closed were 80.2 and 127.1 microgram/m3, respectively. In the 12-year-old school, the formaldehyde levels in 1st and 4th class with open and closed window were 12.6 and 7.5 microgram/m3, and 19.8 and 25.2 microgram/m3, respectively. With respect to total volatile organic compounds, the levels in the 1st and 4th classes with the window open in the newly built school were 87.2 and 428.2 microgram/m3, respectively. In the 1st and 4th classes with the window closed, the total volatile organic compounds were 1,283.5 and 1,715.4 microgram/m3, respectively. In the 12-year-old school, the total volatile organic compounds were 240.9 and 150.8 microgram/m3, and 371.9 and 448.0 microgram/m3 in the 1st and 4th classes, respectively. In the case of a newly built school, the performance of the students in the neurobehavioral test in the 4th class with the window closed was 8.3% lower than for those in the 1st class with the window closed, but was only 5.9% lower when the windows were open. There was a statistical significant difference in the total numbers of symptoms between the two schools. CONCLUSIONS: These results suggest a proper evaluation of the indoor air quality within schools is required into both the level of contamination and the health effects of these contaminants toward children.
Air Pollutants
;
Air Pollution, Indoor*
;
Child*
;
Formaldehyde
;
Humans
;
Nose
;
Questionnaires
;
Sneezing
;
Volatile Organic Compounds
4.Postoperative Radiotherapy in the Rectal Cancers Patterns of Care Study for the Years of 1998~1999.
Jong Hoon KIM ; Do Hoon OH ; Ki Moon KANG ; Woo Cheol KIM ; Won Dong KIM ; Jung Soo KIM ; June Sang KIM ; Jin Hee KIM ; Hak Jae KIL ; Chang Ok SUH ; Seung Chang SOHN ; Yong Chan AHN ; Dae Sik YANG ; Won Yong OH ; Kyung Ja LEE ; Mison CHUN ; Hong Rae CHO ; Doo Ho CHOI ; Young Min CHOI ; Il Bong CHOI ; Il Han KIM
The Journal of the Korean Society for Therapeutic Radiology and Oncology 2005;23(1):22-31
PURPOSE: To conduct a nationwide survey on the principles in radiotherapy for rectal cancer, and produce a database of Korean Patterns of Care Study. MATERIASL AND METHODS: We developed web-based Patterns of Care Study system and a national survey was conducted using random sampling based on power allocation methods. Eligible patients were who had postoperative radiotherapy for rectal cancer without gross residual tumor after surgical resection and without previous history of other cancer and radiotherapy to pelvis. Data of patients were inputted to the web based PCS system by each investigators in 19 institutions. RESULTS: Informations on 309 patients with rectal cancer who received radiotherapy between 1998 and 1999 were collected. Male to female ratio was 59 : 41, and the most common location of tumor was lower rectum (46%). Preoperative CEA was checked in 79% of cases and its value was higher than 6 ng/ml in 32%. Pathologic stage were I in 1.6%, II in 32%, III in 63%, and IV in 1.6%. Low anterior resection was the most common type of surgery and complete resection was performed in 95% of cases. Distal resection margin was less than 2 cm in 30%, and number of lymph node dissected was less than 12 in 31%. Chemotherapy was performed in 91% and most common regimen was 5-FU and leucovorine (69%). The most common type of field arrangement used for the initial pelvic field was the four field box (Posterior-Right-Left) technique (65.0%), and there was no AP-PA parallel opposing field used. Patient position was prone in 81.2%, and the boost field was used in 61.8%. To displace bowel outward, pressure modulating devices or bladder filling was used in 40.1%. Radiation dose was prescribed to isocenter in 45.3% and to isodose line in 123 cases (39.8%). Percent delivered dose over 90% was achieved in 92.9%. CONCLUSION: We could find the Patterns of Care for the radiotherapy in Korean rectal cancer patients was similar to that of US national survey. The type of surgery and the regimen of chemotherapy were variable according to institutions and the variations of radiation dose and field arrangement were within acceptable range.
Drug Therapy
;
Female
;
Fluorouracil
;
Humans
;
Leucovorin
;
Lymph Nodes
;
Male
;
Neoplasm, Residual
;
Pelvis
;
Radiotherapy*
;
Rectal Neoplasms*
;
Rectum
;
Research Personnel
;
Urinary Bladder
5.The Clinical and Histopathological Study of Ota's Nevus.
Seung Hyun CHUN ; Sanghoon LEE ; Hana PARK ; Su Young JHUN ; In Bum SOHN ; Hak Yong KIM ; Eung Ho CHOI ; Sang Min HWANG ; Seung Hun LEE ; Joong Gie KIM ; Seong Jun SEO ; Joo Heung LEE ; Hyun CHUNG ; Sang Won KIM ; Jeong Deuk LEE ; Young Min PARK ; Hyung Ok KIM ; Bo Kyung KOH ; Il Hwan KIM ; Soo Nam KIM ; Seok Jong LEE ; You Chan KIM ; Mi Woo LEE ; Jai Kyoung KOH ; Kwang Ho KIM ; Sang Tae KIM ; Kee Suck SUH ; Sung Ku AHN
Korean Journal of Dermatology 2004;42(3):272-280
BACKGROUND: Ota's nevus, characterized by the presence of melanocytes in the dermis, has been familiar among dermatologists, but the etiology, the pathophysiology, the clinical and histological classification are not entirely clear. To understand and elucidate them, more clinical studies and researches are necessary. OBJECT: The aim of this study was to document the clinical and histopathological features of Ota's nevus. METHODS: We examined 299 patients with Ota's nevus who visited the dermatology clinic in Korea from February 1993 to August 2003. Among them, 188 patients were biopsied. All the specimens were stained with hematoxylin and eosin. We examined the age & sex distribution, age of onset, seasonal variation, associated skin diseases, aggravating factors and color. We clinically classified Ota's nevus into 4 types according to Tanino's classification and histologically into 5 types based on the pattern of pigmentation. RESULTS: 1. The ratio of male and female was 1: 3. 2. The peak age of onset was at birth (28.4%) and puberty (24.8%). 3. Seasonal variation was observed with distinct aggravation in the summer (60%). 4. The associated diseases were 9 cases of persistent mongolian spot, 6 cases of nevus flameus, 4 cases of blue nevus, 3 cases of vitiligo, 3 cases of nevus of Ito, 2 cases of atopic dermatitis, 2 cases of psoriasis, 2 cases of cafe au late macules and 2 cases of contact dermatitis. 5. The aggravating factors were sunlight (35.8%), emotional stress (21.0%), menstruation (12.6%), cold exposure (9.5%), pregnancy (9.5%), fatigue (9.5%) and chemical agents (2.1%). 6. The color of lesions were blue black (36.8%), brown (34.8%), dark brown (16.1%) and slate (11.0%). 7. All cases were classified according to Tanino's METHODS: type Ia (23.1%), type Ib (20.1%), type II (26.7%), type III (9.4%), type IV (20.7%). 8. The histological subtypes of Ota's nevus were classified as: the superficial type (35.6%); the middermis type (5.9%), the superficial-middermis type (18.6%); the mid-lower dermis type (2.7%); the diffuse type was composed of the superficial dominant type (19.7%), the middermis dominant type (4.8%), the dispersed (true diffuse) type (12.2%) and the deep dominant type (0.5%). 9. In the relation between histological types and the color of the lesion: the superficial type had 31 cases of brown color, 15 cases of blue black color, 11 cases of dark brown color and 9 cases of slate color; the middermis type had 6 cases of blue black color and 2 cases of dark brown color, query number of cases of slate color; the superficial-middermis type had 12 cases of blue black color, 10 cases of dark brown color, 7 cases of brown color and 6 cases of slate color: the mid-lower dermis type had 3 cases of blue black color; for the diffuse type, the superficial dominant type had 13 cases of brown color, query number of cases of blue black color and 7 cases of dark brown color; the mid-dermis dominant type had 4 cases of brown color, query number of cases of dark brown color, the dispersed type had 14 cases of blue black color and 5 cases of brown color; the deep dominant type had 1 case of blue black color. CONCLUSION: The histological reclassification of Ota's nevus may be very useful in making a therapeutic prognosis of the disease.
Adolescent
;
Age of Onset
;
Classification
;
Dermatitis, Atopic
;
Dermatitis, Contact
;
Dermatology
;
Dermis
;
Eosine Yellowish-(YS)
;
Fatigue
;
Female
;
Hematoxylin
;
Humans
;
Korea
;
Male
;
Melanocytes
;
Menstruation
;
Mongolian Spot
;
Nevus
;
Nevus of Ota*
;
Nevus, Blue
;
Parturition
;
Pigmentation
;
Pregnancy
;
Prognosis
;
Psoriasis
;
Puberty
;
Seasons
;
Sex Distribution
;
Skin Diseases
;
Stress, Psychological
;
Sunlight
;
Vitiligo
6.Clinical Characteristics of Herpes Zoster in Immunocompromised Patients and Analysis of Pharmacokinetics of Acyclovir.
Dong Gun LEE ; Woon Hak KIM ; Dong Ho HUH ; Jung Hyun CHOI ; Wan Shik SHIN ; Ok Nyu KIM ; Chang Ki MIN ; Dong Wook KIM ; Jong Wook LEE ; Woo Sung MIN ; Chun Choo KIM
Korean Journal of Infectious Diseases 2000;32(2):93-99
BACKGROUND: We investigated this study to elucidate the clinical characteristics of herpes zoster in immunocompromised patients and to analyze the pharmacokinetics of acyclovir with the response of therapy. METHODS: A total of 51 immunocompromised patients with herpes zoster were studied prospectively over 22 months (Dec. 1997-Sep. 1999). Patients were randomized to 4 groups according to pharmaceutical company (company A or B) and method of infusion (intermittently or continuously) of acyclovir. Patients were assigned to receive acyclovir (10 mg/kg, three times daily) intermittently, or acyclovir (5 mg/kg bolus, and then 40 mg/kg/day) continuously for 7 days respectively. RESULTS: Mean age was 31.9+/-12.6 years and the ratio of male to female was 1:1.68. Dermatome involvement was most frequently on the thoracic dermatome (49%), followed by cervical, lumbar dermatome. Forty-two (82.3%) patients received hematopoietic stem cell transplantation and herpes zoster was most prevalent in average 9.2+/-7.9 months after transplantation. Thirty (58%) patients had been taken immunosuppressants at the onset of herpes zoster. Recurrence rate of herpes zoster was 7.8%. Overall adverse experience rate was 15.7%. Pharmacokinetic parameter of acyclovir from company B was close to reference as compared with those of company A. There was no difference in steady-state concentration (Css) of acyclovir between intermittent and continuous infusion. Cessation of new lesion formation occurred 4.1+/-1.3 days after initiation of therapy without statistically significant intergroup differences. Rate to loss of vesicle over 50% at the seventh day of infusion also showed no intergroup differences, but tended to highest at the continuous group of company B. CONCLUSION: Herpes zoster in immunocompromised patients were prevalent during the use of immunosuppressant, mostly within 1 year after hematopoietic stem cell transplantation. Anatomical distribution was just like that of immunocompetent patients, but recurred more frequently. Clinical response was not different according to the pharmaceutical company or method of infusion. Supplementary evaluation to the dose of acyclovir, method of infusion, duration of treatment, and alternatives may be required.
Acyclovir*
;
Female
;
Hematopoietic Stem Cell Transplantation
;
Herpes Zoster*
;
Humans
;
Immunocompromised Host*
;
Immunosuppressive Agents
;
Male
;
Pharmacokinetics*
;
Prospective Studies
;
Recurrence
7.A Case of Membranous Nephropathy Associated with a Stomach Cancer.
Hyung Jun LEE ; Eun Young LEE ; Jin Soo KIM ; Jong In LEE ; Young Hak SHIM ; Seung Ok CHOI ; Soon Won HONG ; Chul Hoe KOO
Korean Journal of Nephrology 1999;18(1):190-193
The relationship between malignancy and membranous nephropathy remains unresolved exactly, but it was suggeste d that nephrotic syndrome can be menifested as a prodrome to underlying malignancy. It has been reported that membranous nephropathy is associated with malignancy, however, a few cases were reported in Korea. We recently experienced a patient with stomach cancer which was detected during the follow-up of the membranous nephropathy. Proteinuria and microsopic hematuria disappeared after subtotal gastrectomy. We concluded that the stomach cancer might be a cause of glomerulonephritis in this case.
Follow-Up Studies
;
Gastrectomy
;
Glomerulonephritis
;
Glomerulonephritis, Membranous*
;
Hematuria
;
Humans
;
Korea
;
Nephrotic Syndrome
;
Proteinuria
;
Stomach Neoplasms*
;
Stomach*
8.Expression of GnRH and GnRH-receptor mRNAs in the Human Placenta.
Myeong Ok KIM ; Phil Ok KOH ; Gyeong Jae CHO ; Hae Suk KIM ; Jong Hak LEE ; Jong Hwa KIM ; Won Young PAIK ; Wan Sung CHOI
Korean Journal of Physical Anthropology 1998;11(1):165-175
Placental GnRH is one of the potential paracrine regulator of hCG secretion from the trophoblasts during pregnancy. However, this paracrine function is not clearly confirmed. The present study was designed to evaluate the possible correlation between the synthesis and cellular distribution of GnRH and GnRH -receptor in the placental villi. 6 to 40 weeks termed twenty five human placental tissues were used in this study. GnRH and GnRH -receptor mRNAs were localized in the placenta by in situ hybridization using the corresponding cRNA probes. GnRH mRNA was present in all cell types of placenta including cytotrophoblasts, syncytiotrophoblasts and stromal cells. The GnRH -receptor mRNA signals were localized in both cytotrophoblasts and syncytiotrophoblasts. The GnRH -receptor mRNA signals were also localized in some stromal cells at the full term placenta. GnRH mRNA signals were detected abundantly at 6 ~7 weeks and the intensities were remarkably increased with the following gestational ages. GnRH -receptor mRNA signals were detected at 6 ~7 weeks, peaked at 9 ~10 weeks, declined at 23 ~24 weeks and focally expressed at full term placenta. The present study demonstrates that GnRH mRNA is expressed in all cell types of the placenta, however GnRH -receptor mRNA is expressed only in the cytoptrophblasts and syncytiotrophoblasts and exhibits parallel change with the time course of hCG secretion during pregnancy. These data provide a morphological understanding that placental GnRH has a paracrine/autocrine role through its receptor from 6 ~7 weeks gestation to term placenta.
Chorionic Villi
;
Gestational Age
;
Gonadotropin-Releasing Hormone*
;
Humans*
;
In Situ Hybridization
;
Placenta*
;
Pregnancy
;
RNA, Complementary
;
RNA, Messenger*
;
Stromal Cells
;
Trophoblasts
9.Expression of GnRH-receptor mRNA in the Placenta during Pregnancy.
Won Young PAIK ; Ban Cheol SHIN ; Jeong Gyu SHIN ; Won Jun CHOI ; Soon Ae LEE ; Jong Hak LEE ; Wan Sung CHOI ; Myeong Ok KIM
Korean Journal of Obstetrics and Gynecology 1998;41(12):3058-3062
OBJECTIVE: Our previous study demonstrated that the placental GnRH and GnRH mRNA did not parallel the time course of hCG secretion, though it is thought to be one of the potential paracrine regulators of hCG secretion from the trophoblasts. The present study was designed to examine the potential variation in GnRH-receptor mRNA expression in the placenta, which may account for the GnRH-mediated action of hCG secretion during pregnancy. METHODS: Human placentas in firt, second, and third trimester of normal pregnancy were obtained. These placentas were fixed with 4% paraformaldehyde and embedded in OCT compound, and sectioned by cryostat. For in situ hybridization, S labeled RNA probes were used and followed by autoradiography. RESULTS: The GnRH-receptor mRNA signals were present in both cytotrophoblast and syncytiotrophoblast cell layers. Signal intensities varied with gestational ages and were abundant at 6-7 weeks, peaked at 9-12weeks, declined at 14 and 24 weeks, and were barely detectable at term. The present study demonstrates that GnRH-receptor mRNA exhibits changes paralleling the time course of hCG secretion during pregnancy CONCLUSION: These data provide mechanistic understanding that the paracrine/autocrine regulation of hCG secretion by placental GnRH is mediated through an increase followed by a decline in GnRH-receptor mRNA expression from the first trimester to term placenta.
Autoradiography
;
Female
;
Gestational Age
;
Gonadotropin-Releasing Hormone
;
Humans
;
In Situ Hybridization
;
Placenta*
;
Pregnancy Trimester, First
;
Pregnancy Trimester, Third
;
Pregnancy*
;
RNA Probes
;
RNA, Messenger*
;
Trophoblasts
10.A Case of Early Esophageal Cancer Associated with Invasive Thymoma.
Young Jin KANG ; Hee Ug PARK ; Dae Sik KANG ; Kee Byum LEE ; Soo Dong SUNG ; Jung Tae KIM ; Jong Hak OK
Korean Journal of Gastrointestinal Endoscopy 1995;15(2):212-217
Metachronous double cancer of primary early esophageal squamous cell carcinoma and invasive thymoma is a very rare condition. The invasive thymoma had been detected during the myathenia gravis evaluation and treated by radiation therapy 5 years ago. The esophageal lesion had a nodular-surfaced flat elevation at the mid-esophagus that was found by esophagoscopy. Radical resection for the lesions was undertaken after histologic confirmation. Postoperative pathologic examination documented that the esophageal squamous cell carcinoma was in the "early" stage involving the mucosal and submucosal layer only. We report a case of early esophageal cancer associated with invasive thyrnoma with literatures review.
Carcinoma, Squamous Cell
;
Esophageal Neoplasms*
;
Esophagoscopy
;
Thymoma*

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