1.Mortality and years of life lost of residents with viral hepatitis among in Pudong New Area of Shanghai in 2003 - 2023
Sen WANG ; Lianghong SUN ; Caixia HU ; Hua CHEN ; Xiaobin QU ; Jiayi SHENG ; Siyue HAN ; Caoyi XUE ; Yichen CHEN
Journal of Public Health and Preventive Medicine 2026;37(1):53-57
Objective To analyze the characteristics of viral hepatitis mortality and life loss among residents in Pudong New Area from 2003 to 2023, and to provide a basis for related prevention and control work. Methods Viral hepatitis mortality data were obtained from the Pudong New Area mortality monitoring system. The crude mortality rate (CMR), standardized mortality rate (SMR), potential years of life lost (PYLL), average years of life lost (AYLL), and standardized potential years of life lost (SPYLL) were calculated to analyze viral hepatitis deaths. The average annual change (AAPC) and annual percentage change (APC) of the mortality rate were calculated by Joinpoint regression analysis to analyze the trend of mortality. Results The CMR and SMR of viral hepatitis among residents in Pudong New Area from 2003 to 2023 were 3.89/100000 and 1.98/100000, respectively. Both CMR and SMR of viral hepatitis showed a decreasing trend over time (CMR:APC=-5.476, t=-13.581, P<0.001; SMR:APC=- 7.624, t= -21.253, P<0.001). The CMR for males was 4.75/100000 and the SMR for males was 2.65/100000; the CMR for females was 3.04/100000 and the SMR for females was 1.32/100000, with a higher mortality rate for males than for females(ZCME=12.094,P<0.001; ZSMR=-14.718,P<0.001). Deaths were concentrated in the age groups of 45-64 years old and 65 years old and above, accounting for 91.62% of the total deaths. The PYLL of deaths due to viral hepatitis among residents in Pudong New Area from 2003 to 2023 was 26912 person-years, with a PYLLR of 0.45% and an AYLL of 8.88 years per person. Conclusion The mortality rate of viral hepatitis among the residents of Pudong New Area in 2003-2023 shows a decreasing trend over time. The mortality rate of males is higher than that of females, and the deaths of middle-aged and elderly people account for a large proportion of the total deaths. Chronic hepatitis B is the main cause of death.
2.Evaluation on reliability and validity of Chinese revised version of the Benevolent Childhood Experiences Scale among college students
TIAN Susu, HU Xinyi, LIU Yuxuan, TIAN Jiayi, WANG Yingxue, WANG Yihan, WANG Wei
Chinese Journal of School Health 2026;47(3):365-368
Objective:
To revise and validate the reliability and validity of Chinese version of the Benevolent Childhood Experiences (BCEs) Scale among college students, so as to provide a scientific and reliable assessment tool for related research.
Methods:
From April to June 2025, a stratified cluster random sampling method was used to select 1 677 freshmen from a university in Xuzhou City as participants. The survey was conducted by using the revised Benevolent Childhood Experiences (BCEs) Scale, Childhood Trauma Questionnaire (CTQ) and Brief Suicidal Behavior Scale. Reliability analysis, exploratory factor analysis (EFA), confirmatory factor analysis (CFA), Spearman correlation analysis, and hierarchical linear regression analysis were employed to evaluate the scale s reliability, validity, and relationships among variables.
Results:
The mean scores of the 10 items on the BCEs Scale ranged from 3.97 to 4.46, with standard deviations ranging from 0.88 to 1.07. The Cronbach α coefficient was 0.96. Exploratory factor analysis extracted a single factor, explaining 71.21% of the total variance. Confirmatory factor analysis indicated good model fit ( χ 2/df =4.81, goodness of fit index=0.99, comparative fit index=0.99, normed fit index=0.99, root mean square error of approximation=0.05, standardized root mean square residual=0.01). BCEs total scores were negatively correlated with CTQ total scores and all its dimensions among college students ( r =-0.53 to -0.13, all P < 0.01). Hierarchical regression analysis showed that BCEs moderated the effect of CTQ on suicidal behavior, with a statistically significant interaction ( β=-0.11, t=-4.01, P <0.01).
Conclusion
The Chinese revised version of the BCEs Scale demonstrates good reliability and validity, and it is suitable for assessing BCEs among Chinese college students.
3.CMM-EmbedCluster: a clustering framework for Chinese materia medica based on large language model and Chinese materia medica property theory
Jiayi He ; Jiadong Xie ; Kongfa Hu ; Haiyan Li
Digital Chinese Medicine 2026;9(2):278-289
Objective:
This study proposes a clustering framework for Chinese materia medica (CMM) based on a large language model (LLM), aiming to explore potential compatibility patterns among CMMs from the semantic perspective of CMM property theory.
Methods:
First, a CMM property knowledge base was constructed based on Chinese Materia Medica, including 567 commonly used CMMs characterized by four properties, five flavors, and meridian tropism. Then, 49 CMMs derived from 10 prescriptions for Zangdu (脏毒, pathogenic toxins) recorded in Waike Zhengzong (《外科正宗》, Orthodox Manual of External Medicine) and Yangke Xinde Ji (《疡科心得集》, Collected Insights on Ulcer Medicine) were selected as the experimental dataset. Five semantic representation methods—One-Hot, Word2Vec, Bidirectional Encoder Representations from Transformers (BERT), Beijing Academy of Artificial Intelligence General Embedding (BGE), and Qwen—were applied to encode CMM property information into vector representations. Subsequently, t-distributed Stochastic Neighbor Embedding (t-SNE) was used for nonlinear dimensionality reduction on high-dimensional semantic vectors, followed by k-means clustering (k = 7). Clustering performance was evaluated using the Silhouette Score (SS), Davies-Bouldin Index (DBI), and Calinski-Harabasz Index (CHI).
Results:
The Qwen-based clustering method, CMM-EmbedCluster, achieved the highest SS (0.607 4) and CHI (158.057 2), as well as the lowest DBI (0.499 5), indicating improved cluster separation and compactness compared with other methods. Visualization of CMM clustering results showed that the clusters were well separated in the low-dimensional space, with strong inter-cluster discrimination and high intra-cluster functional consistency. Further interpretability analysis of CMM clustering results revealed stable structural differences among clusters in terms of four properties, five flavors, and meridian tropism, forming functional partitions consistent with CMM property theory.
Conclusion
CMM-EmbedCluster utilizes an LLM to achieve semantic-level representation and clustering of CMMs within the framework of CMM property theory, providing support for exploring potential compatibility patterns among CMMs from the perspective of CMM property semantics.
4.Effects of daily mean temperature on sudden death among residents of Pudong New Area, Shanghai: A time-series study
Siyue HAN ; Lianghong SUN ; Hua CHEN ; Xiaobin QU ; Jiayi SHENG ; Caixia HU ; Sen WANG ; Yichen CHEN ; Caoyi XUE
Journal of Environmental and Occupational Medicine 2026;43(8):959-966
Background The crude mortality rate of sudden death has shown a steady upward trend. Pudong New Area, Shanghai, is a highly urbanized and densely populated district that is substantially affected by the urban heat island effect and has experienced frequent extreme temperature events in recent years. However, evidence on the association between ambient temperatures and sudden death among local residents remains limited. Objective To examine the association between daily mean temperature and sudden death in Pudong New Area, and to provide evidence for reducing temperature-related risks of sudden death. Methods Data on sudden death, meteorological factors (daily average temperature, daily average relative humidity, and daily average air pressure), and air pollutants [inhalable particulate matter (PM10), sulfur dioxide (SO2), and nitrogen dioxide (NO2)] in Pudong New Area from 2016 to 2021 were collected. A distributed lag non-linear model was used to examine the associations of daily mean temperature with total sudden death and sudden death due to cardiovascular and cerebrovascular diseases, including lagged and cumulative effects (lag0, 0-3, 0-7, 0-14, and 0-21 d). Stratified analyses were performed by sex, age, and education level to identify vulnerable populations. The temperature attributable burden of sudden death was assessed by calculating attributable number (AN) and attribute fraction (AF). Results A total of 19458 sudden deaths were reported in Pudong New Area from 2016 to 2021, of which 11082 (56.95%) were due to cardiovascular and cerebrovascular diseases. Both low (P5, 4.6 ℃) and high (P95, 30.2 ℃) temperatures were associated with increased risks of sudden death. The cumulative risks associated with low temperature peaked at lag 0-21 d for both total sudden death and sudden death due to cardiovascular and cerebrovascular diseases. In contrast, the cumulative risks associated with high temperature peaked at lag 0-7 d for total sudden death and at lag 0-3 d for sudden death due to cardiovascular and cerebrovascular diseases. Stratified analyses showed that females, individuals aged ≥65 years, and those with primary school education or below were more sensitive to low temperature; whereas females, individuals aged <65 years, and those with secondary school education or above were more sensitive to high temperature. Using 21.5 ℃ as the minimum mortality temperature, the AN of total sudden deaths attributable to non-optimal temperature was 3791 (95%CI: 1853, 5587), with an AF of 20.41% (95%CI: 9.47%, 28.94%); the AN attributable to low temperature was 3358 (95%CI: 1087, 5062), with an AF of 17.26% (95%CI: 5.89%, 26.01%), whereas the AN attributable to high temperature was 225 (95%CI: −274, 655), with an AF of 2.03% (95%CI: −2.53%, 5.78%). For sudden deaths due to cardiovascular and cerebrovascular diseases, the AN attributable to non-optimal temperature was 2721 (95%CI: 1747, 5575), with an AF of 24.55% (95%CI: 9.59%, 28.65%); the AN attributable to low temperature was 2496 (95%CI: 988, 3562), with an AF of 22.53% (95%CI: 8.97%, 32.41%), whereas the AN attributable to high temperature was 614 (95%CI: −15, 1176), with an AF of 3.15% (95%CI: −0.08%, 6.02%). Conclusions Both low (P5, 4.6 ℃) and high (P95, 30.2 ℃) temperatures are associated with increased risks of sudden death in Pudong New Area, Shanghai. High temperature shows a relative short-term effect, whereas low temperature shows a stronger cumulative effect. Females, people ≥65 years, and individuals with primary school educational attainment or below are more vulnerable to low temperature, while females, people <65 years, and those with secondary school educational attainment or above are more vulnerable to high temperature. The attributable burden of low temperature is greater than that of high temperature. Targeted health protection measures should be strengthened for vulnerable populations during extreme temperature events.
5.Youguiwan Promotes Localization and Differentiation of Embryonic Stem Cells in Mouse Ovaries via Akt/mTOR/4EBP1/P70S6K Signaling Pathway
Xiang HU ; Mingya ZHU ; Qin ZHOU ; Jiayi SUN ; Zimo LI ; Xiao WANG
Chinese Journal of Experimental Traditional Medical Formulae 2026;32(22):51-60
ObjectiveTo observe the effects of Youguiwan on the localization and differentiation of embryonic stem cells transplanted into ovaries,and to preliminarily explore whether its mechanism is related to the protein kinase B (Akt)/mammalian target of rapamycin (mTOR)/4E-binding protein 1 (4EBP1)/p70S6 kinase (P70S6K) signaling pathway. MethodsA total of 81 healthy adult female C57BL/6 mice that had received ovarian transplantation of GFP-labeled embryonic stem cells were randomly allocated into a control group,a Youguiwan group,and a positive control group. The control group received normal saline via gavage,the Youguiwan group was administered Youguiwan decoction at a clinical equivalent dose of 17.1 g·kg-1,and the positive control group received human menopausal gonadotropin (HMG) injections every 48 h. Ovarian tissue samples were collected on days 7,14,and 21 post-administration. Frozen sections were prepared to observe stem cell localization. The immunofluorescence assay was used to detect growth differentiation factor 9 (GDF9) and mTOR expression. real time polymerase chain reaction(Real-time PCR) was performed to measure the mRNA levels of follicle-stimulating hormone receptor (FSHR) and luteinizing hormone receptor (LHR). Western blotting was conducted to assess the expression and phosphorylation levels of Akt,mTOR,4EBP1,and P70S6K. ResultsFluorescence microscopy revealed that the transplanted embryonic stem cells were predominantly localized within the granular cell layer,the cell layer of the follicular structure,and the stroma. After 14 days of drug intervention,compared with the control group,the Youguiwan group showed upregulated mRNA levels of FSHR and LHR in the ovarian tissue (P<0.01),as well as elevated phosphorylation/protein ratios of Akt,mTOR,4EBP1,and P70S6K (P<0.05). After 21 days of drug intervention,compared with the control group,the Youguiwan group exhibited enhanced expression of GDF9 and mTOR in the ovarian tissue as detected by immunofluorescence (P<0.05),along with elevated mRNA levels of FSHR and LHR (P<0.01) and phosphorylation/protein ratios of Akt and 4EBP1 (P<0.05). ConclusionYouguiwan can promote the localization and differentiation of mouse embryonic stem cells within the ovary and enhance the expression of GDF9,FSHR,and LHR mRNA in the ovarian tissue by influencing the Akt/mTOR/4EBP1/P70S6K pathway.
6.Horticultural Therapy Combined with Intradermal Needling for Patients with Generalized Anxiety Disorder of Liver Depression Transforming into Fire Syndrome Under Transcranial Magnetic Stimulation and Psychological Therapy:Clinical Observation of 60 Cases
Wanyun ZHANG ; Jiayi YAN ; Qingyi QIU ; Yumei PENG ; Xiaoling ZHONG ; Jinwen ZHANG ; Rundong TANG ; Miao WU ; Dan HU ; Guang SU
Journal of Traditional Chinese Medicine 2025;66(1):50-58
ObjectiveTo observe the clinical effectiveness of horticultural therapy involving the planting of Chinese medicinal herbs (mint and lily potted plants) combined with intradermal needling therapy for generalized anxiety disorder (GAD) of liver depression transforming into fire syndrome under transcranial magnetic stimulation and basic psychological therapy, and to explore the possible mechanisms of action. MethodsA total of 180 patients with GAD of liver depression transforming into fire syndrome were randomly divided into three groups, horticultural therapy group, intradermal needling group, and horticultural therapy+intradermal needling group, with 60 patients in each. All groups received basic treatment including basic psychological therapy and transcranial magnetic stimulation. The horticultural therapy group received horticultural therapy in addition to the basic treatment; the intradermal needling group received intradermal needling therapy once a week for 8 weeks in addition to the basic treatment; the horticultural therapy+intradermal needling group received both horticultural therapy and intradermal needling therapy, following the same procedures and duration. Hamilton Anxiety Rating Scale (HAMA), Self-Rating Anxiety Scale (SAS), and Pittsburgh Sleep Quality Index (PSQI) scores were assessed at baseline and after 2, 4, 6, and 8 weeks of treatment. Serum levels of adrenocorticotropic hormone (ACTH) and corticosterone (CORT) were measured before treatment and after 8 weeks of treatment. Motor-evoked potential (MEP) baseline levels were recorded before treatment, and MEP amplitude ratios were compared after 1 week and 8 weeks of treatment. Clinical effectiveness and safety were evaluated after 8 weeks of treatment. Pearson correlation analysis was used to examine the relationships between serum ACTH and CORT levels, MEP amplitude, and anxiety. ResultsIn the horticultural therapy group and intradermal needling group, HAMA, SAS and PSQI scores after 4, 6, and 8 weeks treatment were lower than baseline scores (P<0.05). In the horticultural therapy+intradermal needling group, these scores showed a significant decline starting after 2 weeks treatment and continuing through 8 weeks after treatment (P<0.05). The HAMA, SAS, and PSQI scores in the horticultural therapy+intradermal needling group were significantly lower than those in the other two groups after 2, 4, 6, and 8 weeks treatment (P<0.05). After 8 weeks of treatment, serum CORT and ACTH levels in the horticultural therapy+intradermal needling group were significantly lower than baseline levels (P<0.05) and were also lower than those in the horticultural therapy group and intradermal needling group at the same time point (P<0.01). When comparing the level after 8 weeks treatment to that after 1 week treatment, under PAS10 stimulation, the MEP amplitude ratio in the intradermal needling group decreased at 30 minutes, while in the horticultural therapy+intradermal needling group, the MEP amplitude ratio decreased at all time points (P<0.05 or P<0.001); under PAS25 stimulation, the MEP amplitude ratio in the horticultural therapy group increased at 20 minutes, and in the intradermal needle group at 10 minutes (P<0.05). In the horticultural therapy+intradermal needling group, the MEP amplitude ratio increased significantly at all time points after treatment (P<0.001). The cure rate in the horticultural therapy+intradermal needling group (74.14%, 43/58) was significantly higher than that in the horticultural therapy group (30.00%, 18/60) and the intradermal needling group (48.28%, 28/58, P<0.05). Correlation analysis revealed that serum ACTH and CORT levels were positively correlated with HAMA scores (r = 0.488, P<0.01; r = 0.428, P<0.01). Following PAS10 intervention, the MEP amplitude ratio was positively correlated with HAMA scores (r = 0.458, P<0.01), whereas after PAS25 intervention, the MEP amplitude ratio was negatively correlated with HAMA scores (r = -0.562, P<0.01). ConclusionHorticultural therapy combined with intradermal needling treatment, under transcranial magnetic stimulation and basic psychological therapy, demonstrates significant clinical effectiveness in patients with GAD of liver depression transforming into fire syndrome. Its mechanism of action may be related to the regulation of hyperactivation of the hypothalamic-pituitary-adrenal (HPA) axis and the reduction of cortical excitability.
7.Association of systemic immune-inflammation index and pan-immune-inflammation value with incident non-alcoholic fatty liver disease
Yangxuan HE ; Xinlei MIAO ; Manling HU ; Fei XU ; Jiayi DENG ; Meng LI ; Song LENG
Chinese Journal of Health Management 2025;19(9):707-713
Objective:Investigating the association of the systemic immune-inflammation index and the pan-inflammation index with incident non-alcoholic fatty liver disease (NAFLD).Methods:This retrospective cohort study included 42 891 participants who underwent at least two health examinations at the Second Affiliated Hospital of Dalian Medical University between 2014 and 2023. Based on their levels of the systemic immune inflammation index (SII) and the pan immune inflammation value (PIV), participants were respectively divided into four quartile groups (Q1 to Q4). Cox proportional hazards models were employed to analyze the association of different SII and PIV levels, as well as their quartile groups, with new onset NAFLD in the total population and across various subgroups. Restricted cubic splines were used to examine the dose response relationship between these inflammatory indices and incident NAFLD. Additionally, sensitivity analyses were conducted to confirm the robustness of the findings.Results:After adjusting for confounding factors, the natural logarithm-transformed lnSII ( HR=1.247, 95% CI: 1.184-1.314, P<0.001) and lnPIV ( HR=1.192, 95% CI: 1.148-1.238, P<0.001) were significantly positively associated with the risk of NAFLD. When the subjects were grouped by SII quartiles (Q1-Q4), compared with those in Q1, participants in Q2, Q3, and Q4 exhibited progressively higher risks of incident NAFLD:11.9% ( HR=1.119, 95% CI: 1.051-1.192, P<0.001), 17.1% ( HR=1.171, 95% CI: 1.100-1.248, P<0.001), and 29.1% ( HR=1.291, 95% CI: 1.211-1.377, P<0.001), respectively. Quartile analysis of PIV yielded similar trends: the risk of incident NAFLD increased for 10.4% ( HR=1.104, 95% CI: 1.034-1.179, P=0.003), 18.7% ( HR=1.187, 95% CI: 1.112-1.266, P<0.001), and 30.5% ( HR=1.305, 95% CI: 1.223-1.393, P<0.001) in Q2, Q3, and Q4 group respectively when compared to that in Q1 group. Subgroup analysis confirmed consistent associations of SII and PIV with elevated NAFLD risk across all subgroups. Conclusion:Elevated levels of SII and PIV are significantly associated with increased risk of NAFLD.
8.Cohort study on cumulative atherosclerosis-related index in evaluating new-onset non-alcoholic fatty liver disease
Jiayi DENG ; Xinlei MIAO ; Manling HU ; Meng LI ; Yangxuan HE ; Fei XU ; Song LENG
Chinese Journal of Digestion 2025;45(8):526-533
Objective:To explore the correlation of cumulative atherogenic index of plasma (cumAIP) and cumulative atherosclerosis index (cumAI) with new-onset non-alcoholic fatty liver disease (NAFLD).Methods:From January 2017 to December 2023, 2 472 subjects who underwent health checkups at the Second Affiliated Hospital of Dalian Medical University for 3 consecutive years were enrolled. Triglyceride, total cholesterol, high density lipoprotein cholesterol and their measurement time intervals were used to calculate cumAIP and cumAI. The subjects were divided into Q1, Q2, Q3 and Q4 groups with the threshold values of 25th percentile, median and 75th percentile of the baseline atherogenic index of plasma (AIP) and atherosclerotic index (AI) subjects. Cox regression model was used to analyze the effects of cumAIP and cumAI on the new-onset NAFLD, restricted cubic spline was performed to analyze the nonlinear association between cumAIP and cumAI and new-onset NAFLD, and the clinical decision curve was used to compare the decision value of different indicators for NAFLD. Results:The risk of NAFLD gradually increased along with the increasing of cumAIP and cumAI. In the quartile groups of cumAIP, the incidence of Q1 to Q4 groups was 6.15%, 8.74%, 15.05%, and 25.08%, respectively. In the quartile groups of cumAI, the incidence of Q1 to Q4 groups was 5.99%, 11.17%, 15.21%, and 22.65%, respectively. After adjusting the confounding factors, the risk of new-onset NAFLD in the high-level group ( Q4) was higher than that in the low-level cumAIP group ( Q1) ( HR=3.15, 95% confidence interval (95% CI): 2.15 to 4.63, P<0.001) and the high-level cumAI group ( Q4) ( HR=2.74, 95% CI: 1.82 to 4.10, P<0.001). cumAIP and cumAI showed a significant nonlinear association with new-onset NAFLD ( χ2=119.15, 94.53; both P<0.001). The cumAIP had higher predictive value for NAFLD than the other cumulative lipid metrics and baseline AIP or AI. Conclusion:CumAIP and cumAI can be served as new predictive indicators of NAFLD, with a particular focus on the dynamic cumulative changes of AIP, which can achieve effective early screening for NAFLD.
9.A semi-quantitative evaluation method for the pharyngeal delay under fiberoptic endoscopy
Wen-qian HU ; Yunlu WANG ; Jiayi LIU
Chinese Journal of Rehabilitation Medicine 2025;40(9):1320-1325,1330
Objective:To investigate the reliability and accuracy of a semi-quantitative evaluation method for assessing the severity of pharyngeal delay by fiberoptic laryngoscopy.Method:Fifty-seven fiberoptic endoscopic evaluation of swallowing(FEES)videos and the corresponding 57 video fluoroscopic swallowing study(VFSS)videos were reviewed and analyzed independently by two investi-gators.The semiquantitative evaluation method of pharyngeal delay in the expert consensus on assessment and treatment of swallowing disorders in China(2017 version)was used to rate fiberoptic endoscopic evaluation of swallowing videos.The pharyngeal delay time(PDT)was calculated by the corresponding video fluoroscop-ic swallowing study videos.The intraclass correlation coefficient(ICC)was used as an indicator to verify the consistency of the retention position of the bolus on set of swallowing in VFSS and FEES.The Kruskal-Wal-lis H test was used to compare the difference in PDT between the different classes.Spearman's rank correla-tion analysis was used to test the correlation between the retention position of bolus on set of swallowing and aspiration under VFSS and FEES.The correlation was statistically significant at P<0.05.Result:The consistency index ICC for determining retention position of bolus on set of swallowing in VFSS and FEES was 0.707(P<0.001)indicating moderate agreement.Therefore,the PDT measured by VFSS corre-sponding to different grades of pharyngeal delay in FEES could be compared between groups.The results showed that:between normal and mild groups(P=0.003),between normal and moderate groups(P<0.0001),and between the normal and severe groups(P<0.0001).However,there were no significant differences be-tween the mild and moderate groups(P=1.000),the mild and severe groups(P=0.141),and the moderate and severe groups(P=1.000).The correlation between retention position of bolus on set of swallowing and as-piration was not significant(P=0.642 under VFSS and P=0.920 under FEES).Conclusion:The semi-quantitative evaluation scale of pharyngeal delay under FEES has limited ability to re-flect the severity of swallowing delay,and the degree of differentiation between grades is low,only distin-guishing the normal group from the abnormal group.Thus,it is recommended that this evaluation scale be ad-justed to three levels:normal level:the head of the bolus reaches the root of the tongue and swallowing is initiated;abnormal level:the bolus reaches a site below the tongue base and lingers for a certain period of time before swallowing is initiated.No swallowing level:the bolus lingered anywhere below the tongue base and no swallowing initiation was observed.
10.Research on the Algorithm of Mining Information of Traditional Chinese Herb System Biology Based on Graph Neural Net-work
Daifeng ZHANG ; Guoqiang BIAN ; Jiayi HE ; Jiadong XIE ; Chenjun HU ; Kongfa HU
Journal of Nanjing University of Traditional Chinese Medicine 2025;41(4):483-493
OBJECTIVE To provide help for further exploring the mechanism of action of traditional Chinese herb by constructing a complex network of traditional Chinese herb-gene-protein,optimizing the mining method of potential associated genes of traditional Chinese herb and improving the mining efficiency of traditional Chinese herb system biology information.METHODS A graph neural network model HERBGAT with an attention mechanism was proposed.A small amount of traditional Chinese herb-related gene data in the public data platform was used as input,and deep mining was performed in the traditional Chinese herb-gene-protein complex net-work to output potential traditional Chinese herb-related genes.The prediction results were analyzed by disease association analysis and KEGG signaling pathway analysis on the bioinformatics platform to clarify their mechanism of action,and the prediction results were verified by the literature retrieval platform.RESULTS The training results showed that the average prediction accuracy of the HERB-GAT model could reach 94%.Compared with the other two advanced complex network mining methods,HERBGAT showed better per-formance in the three indicators of ACC,AUC and AUPR.In the literature verification stage,the model prediction results were verified by TCM clinical literature and modern pharmacology literature,showing the good effect of HERBGAT in practical application.At the end of this paper,taking the HERBGAT model and the improved EMOGI model to explore the mechanism of action of Pinellia ternata in treating lung cancer as an example,199 potential associated genes of Pinellia ternata in treating lung cancer were found,and these potential associated genes were preliminarily analyzed and discussed with the help of bioinformatics methods.CONCLUSION The HERBGAT model can effectively mine potential traditional Chinese herb-associated genes,improve the mining efficiency of traditional Chinese herb-gene-protein complex networks,provide new ideas and references for the optimization of traditional Chinese herb system biology information mining methods,and provide data basis and experimental direction for exploring the mechanism of action of tradi-tional Chinese herb.


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