1.Texture, Morphology, and Statistical Analysis to Differentiate Primary Brain Tumors on Two-Dimensional Magnetic Resonance Imaging Scans Using Artificial Intelligence Techniques
Subrata BHATTACHARJEE ; Deekshitha PRAKASH ; Cho-Hee KIM ; Hee-Cheol KIM ; Heung-Kook CHOI
Healthcare Informatics Research 2022;28(1):46-57
Objectives:
A primary brain tumor starts to grow from brain cells, and it occurs as a result of errors in the DNA of normal cells. Therefore, this study was carried out to analyze the two-dimensional (2D) texture, morphology, and statistical features of brain tumors and to perform a classification using artificial intelligence (AI) techniques.
Methods:
AI techniques can help radiologists to diagnose primary brain tumors without using any invasive measurement techniques. In this paper, we focused on deep learning (DL) and machine learning (ML) techniques for texture, morphological, and statistical feature classification of three tumor types (namely, glioma, meningioma, and pituitary). T1-weighted magnetic resonance imaging (MRI) 2D scans were used for analysis and classification (multiclass and binary). A total of 102 features were calculated for each tumor, and the 20 most significant features were selected using the three-step feature selection method, which included removing duplicate features, Pearson correlations, and recursive feature elimination.
Results:
From the predicted results of multiclass and binary classification, a long short-term memory binary classification (glioma vs. meningioma) showed the best performance, with an average accuracy, recall, precision, F1-score, and kappa coefficient of 97.7%, 97.2%, 97.5%, 97.0%, and 94.7%, respectively.
Conclusions
The early diagnosis of primary brain tumors is very important because it can be the key to effective treatment. Therefore, this research presents a method for early diagnoses by effectively classifying three types of primary brain tumors.
2.Generation of Hepatic Progenitor Cells from the Primary Hepatocytes of Nonhuman Primates Using Small Molecules
Da Hee HONG ; Changhee LEE ; Yohan KIM ; Seung BUM ; Su-Cheol HAN ; Sung Joo KIM ; Heung-Mo YANG ; Dongho CHOI ; Jaemin JEONG ; Kiyoung RYU
Tissue Engineering and Regenerative Medicine 2021;18(2):305-313
BACKGROUND:
Since primates have more biological similarities to humans than do other animals, they are a valuable resource in various field of research, including biomedicine, regenerative medicine, and drug discovery. However, there remain limitations to maintenance and expansion of primary hepatocytes derived from nonhuman primates. To overcome these limitations, we developed a novel culture system for primate cells.
METHODS:
Primary hepatocytes from Macaca fascicularis (mf-PHs) were isolated from hepatectomized liver. To generate chemically derived hepatic progenitor cells (mf-CdHs), mf-PHs were cultured with reprogramming medium containing A83-01, CHIR99021, and hepatocyte growth factor (HGF). The bi-potent differentiation capacity of mf-CdHs into hepatocytes and biliary epithelial cells was confirmed by treatment with hepatic differentiation medium (HDM) and cholangiocytic differentiation medium (CDM), respectively.
RESULTS:
mf-PHs cultured with reprogramming medium showed rapid proliferation capacity in vitro and expressed progenitor-specific markers. Moreover, when cultured in HDM, these progenitor cells stably differentiated into hepatocytelike cells expressing the mature hepatic markers. On the other hand, when cultured in CDM, the differentiated biliary epithelial cells expressed mature cholangiocyte characteristics.
CONCLUSION
The results of the present study demonstrate that we successfully induced the formation of hepatic progenitor cells from mf-PHs by culturing them with a combination of small molecules, including growth factors. These results offer a means of expanding nonhuman primate hepatocytes without genetic manipulation for cellular resource, preclinical applications and regenerative medicine for the liver.
3.Generation of Hepatic Progenitor Cells from the Primary Hepatocytes of Nonhuman Primates Using Small Molecules
Da Hee HONG ; Changhee LEE ; Yohan KIM ; Seung BUM ; Su-Cheol HAN ; Sung Joo KIM ; Heung-Mo YANG ; Dongho CHOI ; Jaemin JEONG ; Kiyoung RYU
Tissue Engineering and Regenerative Medicine 2021;18(2):305-313
BACKGROUND:
Since primates have more biological similarities to humans than do other animals, they are a valuable resource in various field of research, including biomedicine, regenerative medicine, and drug discovery. However, there remain limitations to maintenance and expansion of primary hepatocytes derived from nonhuman primates. To overcome these limitations, we developed a novel culture system for primate cells.
METHODS:
Primary hepatocytes from Macaca fascicularis (mf-PHs) were isolated from hepatectomized liver. To generate chemically derived hepatic progenitor cells (mf-CdHs), mf-PHs were cultured with reprogramming medium containing A83-01, CHIR99021, and hepatocyte growth factor (HGF). The bi-potent differentiation capacity of mf-CdHs into hepatocytes and biliary epithelial cells was confirmed by treatment with hepatic differentiation medium (HDM) and cholangiocytic differentiation medium (CDM), respectively.
RESULTS:
mf-PHs cultured with reprogramming medium showed rapid proliferation capacity in vitro and expressed progenitor-specific markers. Moreover, when cultured in HDM, these progenitor cells stably differentiated into hepatocytelike cells expressing the mature hepatic markers. On the other hand, when cultured in CDM, the differentiated biliary epithelial cells expressed mature cholangiocyte characteristics.
CONCLUSION
The results of the present study demonstrate that we successfully induced the formation of hepatic progenitor cells from mf-PHs by culturing them with a combination of small molecules, including growth factors. These results offer a means of expanding nonhuman primate hepatocytes without genetic manipulation for cellular resource, preclinical applications and regenerative medicine for the liver.
4.In Vivo Endoscopic Removal of Ancylostoma duodenale in a Patient with Abdominal Pain
Soo Young NA ; Heung Up KIM ; Young Ree KIM ; Seung Uk JEONG ; Sun Jin BOO ; Hyun Joo SONG ; Eun Kwang CHOI ; Byung Cheol SONG
The Korean Journal of Helicobacter and Upper Gastrointestinal Research 2018;18(1):61-64
A 20-year-old Cambodian male living in Korea for 2 years as a foreign worker visited our gastroenterology outpatient clinic. He had a small farm in Cambodia. He complained of postprandial upper abdominal pain with nausea and vomiting for 2 years. Gastroduodenoscopy showed hyperemic mucosa near the major papilla in the duodenum and two small and slender reddish worms. These were removed with endoscopic biopsy forceps. Under microscopy, these were identified as Ancylostoma duodenale by the characteristic morphology of 2 pairs of cutting teeth in the buccal cavity and 3 lobes in the copulatory bursa. After removal of two worms, his symptom improved. Soil-transmitted helminths (STH) present a global health problem. In the Republic of Korea, STH, including hookworms, were highly prevalent until the 1970s. With mass fecal examination followed by selective mass chemotherapy with anthelmintics from 1969 to 1995, the prevalence of STH has rapidly decreased since the 1980s. Since 2004, no hookworms have been found in nationwide surveys on the prevalence of intestinal parasitic infection. Therefore, we report a case of in vivo endoscopic removal of A. duodenale in a patient with abdominal pain.
Abdominal Pain
;
Agriculture
;
Ambulatory Care Facilities
;
Ancylostoma
;
Ancylostomatoidea
;
Anthelmintics
;
Asian Continental Ancestry Group
;
Biopsy
;
Cambodia
;
Drug Therapy
;
Duodenum
;
Endoscopy
;
Gastroenterology
;
Global Health
;
Helminths
;
Humans
;
Korea
;
Male
;
Microscopy
;
Mucous Membrane
;
Nausea
;
Parasitic Diseases
;
Prevalence
;
Republic of Korea
;
Surgical Instruments
;
Tooth
;
Vomiting
;
Young Adult
5.Endoscopic Ultrasound-Guided Perirectal Abscess Drainage without Drainage Catheter: A Case Series.
Eun Kwang CHOI ; Ji Hyun KIM ; Seung Uk JEONG ; Soo Young NA ; Sun Jin BOO ; Heung Up KIM ; Byung Cheol SONG
Clinical Endoscopy 2017;50(3):297-300
A perirectal abscess is a relatively common disease entity that occurs as a postsurgical complication or as a result of various medical conditions. Endoscopic ultrasound (EUS)-guided drainage was recently described as a promising alternative treatment. Previous reports have recommended placement of a drainage catheter through the anus for irrigation, which is inconvenient to the patient and carries a risk of accidental dislodgement. We report four cases of perirectal abscess that were successfully treated with only one or two 7 F double pigtail plastic stent placements and without a drainage catheter for irrigation.
Abscess*
;
Anal Canal
;
Catheters*
;
Drainage*
;
Endosonography
;
Humans
;
Plastics
;
Stents
;
Ultrasonography
6.Regression of esophageal varices during entecavir treatment in patients with hepatitis-B-virus-related liver cirrhosis.
Hye Young JWA ; Yoo Kyung CHO ; Eun Kwang CHOI ; Heung Up KIM ; Hyun Joo SONG ; Soo Young NA ; Sun Jin BOO ; Seung Uk JEONG ; Bong Soo KIM ; Byoung Wook LEE ; Byung Cheol SONG
Clinical and Molecular Hepatology 2016;22(1):183-187
Recent studies suggest that liver cirrhosis is reversible after administering oral nucleos(t)ide analogue therapy to patients with hepatitis B virus (HBV) infection. However, few studies have addressed whether esophageal varices can regress after such therapy. We report a case of complete regression of esophageal varices during entecavir therapy in patients with HBV-related liver cirrhosis, suggesting that complications of liver cirrhosis such as esophageal varices can regress after the long-term suppression of HBV replication.
Abdomen/diagnostic imaging
;
Antiviral Agents/*therapeutic use
;
DNA, Viral/blood
;
Esophageal and Gastric Varices/complications/prevention & control
;
Guanine/*analogs & derivatives/therapeutic use
;
Hepatitis B virus/genetics
;
Hepatitis B, Chronic/complications/*drug therapy/virology
;
Humans
;
Liver Cirrhosis/*diagnosis/etiology
;
Male
;
Middle Aged
;
Polymerase Chain Reaction
;
Ultrasonography
7.Regression of esophageal varices and splenomegaly in two patients with hepatitis-C-related liver cirrhosis after interferon and ribavirin combination therapy.
Soon Jae LEE ; Yoo Kyung CHO ; Soo Young NA ; Eun Kwang CHOI ; Sun Jin BOO ; Seung Uk JEONG ; Hyung Joo SONG ; Heung Up KIM ; Bong Soo KIM ; Byung Cheol SONG
Clinical and Molecular Hepatology 2016;22(3):390-395
Some recent studies have found regression of liver cirrhosis after antiviral therapy in patients with hepatitis C virus (HCV)-related liver cirrhosis, but there have been no reports of complete regression of esophageal varices after interferon/peg-interferon and ribavirin combination therapy. We describe two cases of complete regression of esophageal varices and splenomegaly after interferon-alpha and ribavirin combination therapy in patients with HCV-related liver cirrhosis. Esophageal varices and splenomegaly regressed after 3 and 8 years of sustained virologic responses in cases 1 and 2, respectively. To our knowledge, this is the first study demonstrating that complications of liver cirrhosis, such as esophageal varices and splenomegaly, can regress after antiviral therapy in patients with HCV-related liver cirrhosis.
Abdomen/diagnostic imaging
;
Antiviral Agents/*therapeutic use
;
Drug Therapy, Combination
;
Endoscopy, Digestive System
;
Esophageal and Gastric Varices/complications/prevention & control
;
Female
;
Hepatitis C/complications/*drug therapy
;
Humans
;
Interferon-alpha/*therapeutic use
;
Liver Cirrhosis/*etiology
;
Male
;
Middle Aged
;
Polyethylene Glycols/*therapeutic use
;
Recombinant Proteins/therapeutic use
;
Ribavirin/*therapeutic use
;
Splenomegaly/complications/prevention & control
;
Tomography, X-Ray Computed
;
Ultrasonography
8.Is it necessary to delay antiviral therapy for 3-6 months to anticipate HBeAg seroconversion in patients with HBeAg-positive chronic hepatitis B in endemic areas of HBV genotype C?.
Byung Cheol SONG ; Yoo Kyung CHO ; Hyeyoung JWA ; Eun Kwang CHOI ; Heung Up KIM ; Hyun Joo SONG ; Soo Young NA ; Sun Jin BOO ; Seung Uk JEONG
Clinical and Molecular Hepatology 2014;20(4):355-360
BACKGROUND/AIMS: Spontaneous HBeAg seroconversion occurs frequently in the immune reactive phase in HBeAg-positive chronic hepatitis B (CHB). Therefore, observation for 3-6 months before commencing antiviral therapy is recommended in patients with alanine aminotransferase (ALT) levels that exceed twice the upper limit of normal (ULN). However, HBeAg seroconversion occurs infrequently in patients infected with hepatitis B virus (HBV) genotype C. The aim of the present study was to determine whether the waiting policy is necessary in endemic areas of HBV genotype C infection. METHODS: Ninety patients with HBeAg-positive CHB were followed prospectively without administering antiviral therapy for 6 months. Antiviral therapy was initiated promptly at any time if there was any evidence of biochemical (i.e., acute exacerbation of HBV infection or aggravation of jaundice) or symptomatic deterioration. After 6 months of observation, antiviral therapy was initiated according to the patient's ALT and HBV DNA levels. RESULTS: Only one patient (1.1%) achieved spontaneous HBeAg seroconversion. Biochemical and symptomatic deterioration occurred before 6 months in 17 patients (18.9%) and 5 patients, respectively. High ALT and HBV DNA levels were both independent risk factors for biochemical deterioration. Of 15 patients with HBV DNA > or =5.1x107 IU/mL and ALT > or =5xULN, biochemical deterioration occurred in 7 (46.7%), including 1 patient receiving liver transplantation due to liver failure. CONCLUSIONS: Spontaneous HBeAg seroconversion in patients with HBeAg-positive CHB is rare within 6 months. Biochemical deterioration was common and may lead to liver failure. Immediate antiviral therapy should be considered, especially in patients with high ALT and HBV DNA levels in endemic areas of genotype C infection.
Adult
;
Alanine Transaminase/blood
;
Antiviral Agents/*therapeutic use
;
DNA, Viral/blood
;
Female
;
Follow-Up Studies
;
Genotype
;
Guanine/analogs & derivatives/therapeutic use
;
Hepatitis B e Antigens/*blood
;
Hepatitis B virus/*genetics
;
Hepatitis B, Chronic/*drug therapy
;
Humans
;
Male
;
Middle Aged
;
Prospective Studies
;
Risk Factors
9.Clarithromycin-resistant Helicobacter pylori Associated with 23S rRNA Point Mutations in Jeju Island.
Taeyun KIM ; Hyun Joo SONG ; Sun Young SHIN ; Jo Heon KIM ; Soo Young NA ; Sun Jin BOO ; Eun Kwang CHOI ; Yoo Kyung CHO ; Heung Up KIM ; Byung Cheol SONG
The Korean Journal of Gastroenterology 2013;61(5):252-258
BACKGROUND/AIMS: The point mutations in 23S rRNA gene accounts for the majority of the clarithromycin resistance of Helicobacter pylori. This study aimed to investigate the association between the clarithromycin-resistance of H. pylori and the failure of primary H. pylori eradication therapy in Jeju Island. METHODS: Between April 2011 and October 2012, 6,937 patients underwent endoscopy, and H. pylori infection was evaluated in 2,287 patients (33.0%). Total of 110 patients with H. pylori infection were treated with proton pump inhibitor (PPI)-based triple therapy. The result of eradication was evaluated with urea breath test, histology and PCR which were conducted 4 weeks from the last dose of medicine. RESULTS: The patients who had point mutations were 33 (26.0%). A2142G and A2143G mutations were observed in 10 patients (7.9%) and 23 patients (18.1%). Among 110 patients treated with PPI-based triple therapy, the success rate of the eradication therapy was 52.7% (58/110) and 70.7% (58/82) by intention-to-treat and per-protocol analysis, respectively. Fifteen of the 24 patients who failed the eradication therapy showed point mutations; 1 patient (4.2%) showed A2142G mutation and 14 patients (58.3%) showed A2143G mutation. Patients with A2143G mutation H. pylori showed higher failure rate of 87.5%. Patients with A2142G mutation H. pylori showed similar failure rate compared to those of the patients with wild type H. pylori. CONCLUSIONS: In Jeju Island, the frequency of 23S rRNA point mutations is similar (26.0%) with other regions of Korea (15.8-31.3%). A2143G mutation is associated with the failure of H. pylori eradication.
Adolescent
;
Adult
;
Aged
;
Aged, 80 and over
;
Anti-Bacterial Agents/*therapeutic use
;
Clarithromycin/*therapeutic use
;
DNA, Bacterial/analysis
;
Drug Resistance, Bacterial
;
Female
;
Gastroscopy
;
Helicobacter Infections/*drug therapy
;
Helicobacter pylori/drug effects/*genetics
;
Humans
;
Islands
;
Male
;
Middle Aged
;
Point Mutation
;
Polymerase Chain Reaction
;
Proton Pump Inhibitors/therapeutic use
;
RNA, Ribosomal, 23S/*genetics
;
Republic of Korea
;
Young Adult
10.Usefulness of Positron Emission Tomography-Computerized Tomography Uptake according to Early Gastric Cancer Gross Morphology.
Woo Seong JEONG ; Hyun Joo SONG ; Soo Young NA ; Sun Jin BOO ; Eun Kwang CHOI ; Yoo Kyung CHO ; Heung Up KIM ; Byung Cheol SONG ; Jeong Won LEE ; In Ho JUNG
The Korean Journal of Helicobacter and Upper Gastrointestinal Research 2013;13(3):158-166
BACKGROUND/AIMS: The role of 18F-fluorodeoxyglucose (18F-FDG) PET-CT for early gastric cancer (EGC) was undetermined due to its low sensitivity. The aim of this study was to assess the usefulness of 18F-FDG PET-CT according to endoscopic classification of EGC. MATERIALS AND METHODS: We retrospectively reviewed 206 patients who had undergone PET-CT due to gastric cancer from June 2009 to June 2012. Among those patients, 120 including 65 patients who underwent gastrectomy were analyzed. RESULTS: According to endoscopic gross morphology, 50 (41.7%) patients were classified as EGC and 70 (58.3%) patients were classified as advanced gastric cancer (AGC). Compared with the EGC group, the AGC group showed significantly higher rate of positive 18F-FDG uptake of primary lesions (98.6% vs. 28.0%, P<0.001) and lymph nodes (50.0% vs. 6.0%, P<0.001), and higher standardized uptake value max of primary lesions (7.65+/-3.51 vs. 4.82+/-2.18, P=0.012). Among 65 patients who underwent gastrectomy, PET-CT positive lesions were found in patients with tumor size greater than 3 cm (86.4% vs. 9.5%, P<0.001), lesions detected by stomach CT (90.9% vs. 9.5%, P<0.001) and PET-CT lymph node positive lesions (4.8% vs. 31.8%, P=0.025). Among 31 patients with EGC, elevated types (type I and IIa) showed no difference of positive 18F-FDG uptake compared with flat or depressed types (IIb, IIc, and III) (55.6% vs. 31.8%, P=0.253). CONCLUSIONS: 18F-FDG PET-CT has positive detection rate for EGC greater than 3 cm and there was no differences of 18F-FDG PET-CT uptake rates between elevated types and flat or depressed types of EGC.
Fluorodeoxyglucose F18
;
Gastrectomy
;
Humans
;
Lymph Nodes
;
Retrospective Studies
;
Stomach
;
Stomach Neoplasms

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