1.Hub biomarkers and their clinical relevance in glycometabolic disorders: A comprehensive bioinformatics and machine learning approach.
Liping XIANG ; Bing ZHOU ; Yunchen LUO ; Hanqi BI ; Yan LU ; Jian ZHOU
Chinese Medical Journal 2025;138(16):2016-2027
BACKGROUND:
Gluconeogenesis is a critical metabolic pathway for maintaining glucose homeostasis, and its dysregulation can lead to glycometabolic disorders. This study aimed to identify hub biomarkers of these disorders to provide a theoretical foundation for enhancing diagnosis and treatment.
METHODS:
Gene expression profiles from liver tissues of three well-characterized gluconeogenesis mouse models were analyzed to identify commonly differentially expressed genes (DEGs). Weighted gene co-expression network analysis (WGCNA), machine learning techniques, and diagnostic tests on transcriptome data from publicly available datasets of type 2 diabetes mellitus (T2DM) patients were employed to assess the clinical relevance of these DEGs. Subsequently, we identified hub biomarkers associated with gluconeogenesis-related glycometabolic disorders, investigated potential correlations with immune cell types, and validated expression using quantitative polymerase chain reaction in the mouse models.
RESULTS:
Only a few common DEGs were observed in gluconeogenesis-related glycometabolic disorders across different contributing factors. However, these DEGs were consistently associated with cytokine regulation and oxidative stress (OS). Enrichment analysis highlighted significant alterations in terms related to cytokines and OS. Importantly, osteomodulin ( OMD ), apolipoprotein A4 ( APOA4 ), and insulin like growth factor binding protein 6 ( IGFBP6 ) were identified with potential clinical significance in T2DM patients. These genes demonstrated robust diagnostic performance in T2DM cohorts and were positively correlated with resting dendritic cells.
CONCLUSIONS
Gluconeogenesis-related glycometabolic disorders exhibit considerable heterogeneity, yet changes in cytokine regulation and OS are universally present. OMD , APOA4 , and IGFBP6 may serve as hub biomarkers for gluconeogenesis-related glycometabolic disorders.
Machine Learning
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Humans
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Computational Biology/methods*
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Biomarkers/metabolism*
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Diabetes Mellitus, Type 2/genetics*
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Animals
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Mice
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Gluconeogenesis/physiology*
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Gene Expression Profiling
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Transcriptome/genetics*
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Gene Regulatory Networks/genetics*
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Clinical Relevance
2.Construction of an evaluation index system for the effectiveness of ideological and political education in the curriculum of professional master's degree nursing programs
Jinzhu YIN ; Meiling HUANG ; Zhongyan CAO ; Xueling ZHANG ; Hanqi LUO ; Yao LI
Chinese Journal of Modern Nursing 2025;31(2):205-210
Objective:To construct an evaluation index system for the effectiveness of ideological and political education in the curriculum of professional master's degree nursing programs, providing an evaluation tool for objectively assessing the teaching quality of ideological and political education in these programs.Methods:The initial draft of the index system was designed based on a review of domestic and international literature. From October 2022 to January 2023, 15 experts were selected using convenience sampling for three rounds of Delphi expert consultation, and the analytic hierarchy process was used to determine the weight of the indicators.Results:The positive response rate from the 15 experts in all three rounds of consultation was 100% (15/15), and the expert authority coefficient was 0.813. The Kendall's coefficient of concordance for the overall indicators in the third round was 0.116 ( P<0.01). The constructed evaluation index system includes 5 first-level indicators (goal and concept, faculty, course resources, teaching implementation, teaching effectiveness), 12 second-level indicators, and 49 third-level indicators. Conclusions:The evaluation index system for the effectiveness of ideological and political education in the curriculum of professional master's degree nursing programs demonstrates good scientific validity and reliability. It can provide objective and quantitative evaluation criteria for the development of ideological and political education in these programs.
3.Construction of an evaluation index system for the effectiveness of ideological and political education in the curriculum of professional master's degree nursing programs
Jinzhu YIN ; Meiling HUANG ; Zhongyan CAO ; Xueling ZHANG ; Hanqi LUO ; Yao LI
Chinese Journal of Modern Nursing 2025;31(2):205-210
Objective:To construct an evaluation index system for the effectiveness of ideological and political education in the curriculum of professional master's degree nursing programs, providing an evaluation tool for objectively assessing the teaching quality of ideological and political education in these programs.Methods:The initial draft of the index system was designed based on a review of domestic and international literature. From October 2022 to January 2023, 15 experts were selected using convenience sampling for three rounds of Delphi expert consultation, and the analytic hierarchy process was used to determine the weight of the indicators.Results:The positive response rate from the 15 experts in all three rounds of consultation was 100% (15/15), and the expert authority coefficient was 0.813. The Kendall's coefficient of concordance for the overall indicators in the third round was 0.116 ( P<0.01). The constructed evaluation index system includes 5 first-level indicators (goal and concept, faculty, course resources, teaching implementation, teaching effectiveness), 12 second-level indicators, and 49 third-level indicators. Conclusions:The evaluation index system for the effectiveness of ideological and political education in the curriculum of professional master's degree nursing programs demonstrates good scientific validity and reliability. It can provide objective and quantitative evaluation criteria for the development of ideological and political education in these programs.
4.The Expression of Plasma Membrane Ca2 + -ATPase Isoforms 1 ~3in the Basi lar Membrane of Neonatal Rat Cochlea
Qingguo CHEN ; Hanqi CHU ; Liangqiang ZHOU ; Jin CHEN ; Yun LIU ; Mi LUO ; Yanling TAO
Journal of Audiology and Speech Pathology 2016;24(4):366-370
Objective To study the expression of plasma membrane Ca2+-ATPase isoforms 1~3 (PMCA 1~3 )in the basilar membrane (BM)of the neonatal rat cochlea by Western blot.The PMCA2 content in single BM of the neonatal rat was also examined.Methods Four rats at postnatal 2 days (P2)and 8 days (P8)were respective-ly decapitated and their BMs were isolated.The total proteins of BMs were extracted.The 20μg total proteins were respectively loaded to the gel.The expression of PMCA1-3 was detected by Western blot.Likewise,3μg total proteins from P2 and P8 rat BM were loaded.The expression of PMCA2 was detected by Western blot.Four rats at P8 were decapitated and their BM was isolated.The 5μg,10μg and 20μg total proteins of P8 rat BM were added to the gel and 100 ng,400 ng and 800 ng bovine serum albumin (BSA)were also loaded as reference.After electro-phoresis,the gel was separated into two parts.One part was used for SYPRO staining and the other part was used for PMCA2 detection by Western blot.Results In the 20μg BM total proteins of P2 and P8 rats,the expression of PMCA1 was weak (0.126±0.024,0.131±0.012,respectively),PMCA2 was strong (4.16±0.528,4.25±0.319, respectively),and PMCA3 was barely expressed (0 ).There was a statistical difference among PMCA1 ,PMCA2 and PMCA3(P<0.05).In the 3μg BM total proteins of P2 and P8 rats,the expression of PMCA2 in P8 (4.571± 0.336)was higher than P2 (3.622±0.285).There was a statistical difference(P<0.05).The PMCA2 content in the BM of a P8 rat was about 2 .5 ng.Conclusion There was a different-level expression of PMCA1~3 in the neonatal rat BM with highest expression of PMCA2 ,which could be explained that cochlear hair cells had different requirements of Ca2+ turning for these PMCA isoforms.
5.The Expression of Plasma Membrane Ca2 + -ATPase Isoforms 1~4 and the Splice Variants at Sites A and C in the Neonatal Rat Vestibular Organ
Mi LUO ; Hanqi CHU ; Yanling TAO ; Liangqiang ZHOU ; Jin CHEN ; Yun LIU ; Chunchen PAN ; Qingguo CHEN
Journal of Audiology and Speech Pathology 2016;24(5):473-477
Objective To study the expression of plasma membrane Ca2 + -ATPase isoforms 1 -4 and the splice variants at sites A and C in the neonatal rat vestibular organ.Methods Ten rats at postnatal 2 days (P2 ) were decapitated and their vestibular organs (macula utriculi and macula sacculi)were isolated.The total proteins of the vestibular organs were extracted.The expression of PMCA1-4 splice variants at sites A and C was detected by RT-PCR.Results The splice variants of PMCA1-4 at sites A and C in macula utriculi and macula sacculi of neo-natal rat vestibular organs were PMCA1x/b,PMCA2w/(a,b),PMCA3z/(a,b,c)and PMCA4 (x,z)/b.Conclusion The splice variants at sites A and C among PMCA1,PMCA2,PMCA3 and PMCA4 were different in the vestibu-lar organs of neonatal rats,which could be explained that macula utriculi and macula sacculi had different require-ments of Ca2 + turning for these PMCA isoforms.

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