1.Assembly and network of Rhei Radix et Rhizoma surface microbiome shaped by processing methods and sampling locations.
Guangfei WEI ; Xiao CHEN ; Guozhuang ZHANG ; Conglian LIANG ; Zhaoyu ZHANG ; Bo ZHANG ; Shilin CHEN ; Linlin DONG
Chinese Herbal Medicines 2025;17(1):189-199
OBJECTIVE:
Rhei Radix et Rhizoma has five types of products, namely, raw rhubarb (RR), wine rhubarb (WR), vinegar rhubarb (VR), cooked rhubarb (CR), and rhubarb charcoal (RC). However, Rhei Radix et Rhizoma is easily contaminated with fungi and mycotoxins if not harvested or processed properly. Here, we intend to analyze how microbiome assemblies and co-occurrence patterns are influenced by sampling locations and processing methods.
METHODS:
High-throughput sequencing and internal transcribed spacer 2 (ITS2) were carried out to study the diversities (α- and β-diversity), composition (dominant taxa and potential biomarkers), and network complexitity of surface fungi on RR, WR, VR, CR, and RC collected from Gansu and Sichuan provinces, China.
RESULTS:
The phyla Ascomycota and Basidiomycota; the genera Kazachstania, Malassezia, and Asterotremella; and the species Kazachstania exigua, Asterotremella pseudolonga, and Malassezia restricta were the dominant fungi and exhibited differences in the two provinces and the five processed products. The α-diversity and network complexity were strongly dependent on processing methods. Chao 1, the Shannon index, and network complexity and connectivity were highest in the CR group. The α-diversity and network complexity were influenced by sampling locations. Chao 1 and network complexity and connectivity were highest in the Gansu Province.
CONCLUSION
The assembly and network of the surface microbiome on Rhei Radix et Rhizoma were shaped by processing methods and sampling locations. This paper offers a comprehensive understanding of microorganisms, which can provide early warning for potential mycotoxins and ensure the safety of drugs and consumers.
2.Ecological factors impacting genetic characteristics and metabolite accumulations of Gastrodia elata.
Zhaoyu ZHANG ; Xiaodong LI ; Yuchi ZHANG ; Niegui YIN ; Guoying WU ; Guangfei WEI ; Yuxin ZHOU ; Shilin CHEN ; Linlin DONG
Chinese Herbal Medicines 2025;17(3):562-574
OBJECTIVE:
The investigation of the correlation between ecological factors and the genetic characteristics or metabolites of plants offers valuable insights into the regional causes of genetic and metabolic diversity. Here, Gastrodia elata, a medicinal plant, is employed as a model to explore the environmental factors that influence its genetic characteristics and metabolic accumulations.
METHODS:
A total of 23 G. elata populations from six cultispecies and 11 cultivated regions were selected based on the predictions of the global geographic information system. The genetic characteristics of these populations were evaluated using highly polymorphic simple sequence repeat markers. Additionally, the metabolic accumulations and antioxidant capacity of mature tubers were measured employing colorimetry and high performance liquid chromatography (HPLC). Ecological data of each region were obtained from the WorldClim-global climate database and harmonized world soil database. To assess the influence of ecological factors on the genetic characteristics and metabolic profiles of G. elata, Pearson's correlation analysis was conducted.
RESULTS:
Genetic variation among G. elata populations exceeded that within populations. Genetic diverisity, distance and structure manifested regional and species-specific patterns. Metabolic profiling and antioxidant capacity exhibited regional variations. Notably, the Lueyang region demonstrated that a content range of total polysaccharide, total protein, and phenolic glycosides was 9.34%-189.67% higher than the average. Similarly, in the Hubei region, total phenolic content, p-hydroxybenzyl alcohol content, and antioxidant indicators were observed to be higher than the average levels, by 106.57%, 136.47% and 12.50%-91.14%, respectively. Furthermore, ecological factors had a significant comprehensive impact on G. elata genetic characteristics (r > 0.256 and P < 0.05). Multivariate metabolite accumulations in G. elata were influenced by dominant ecological factors. Temperature notably impacted the accumulation of total protein (|r| > 0.528 and P < 0.05). Moisture, encompassing precipitation and soil content, significantly affected the production of phenolic glycosides (|r| > 0.503 and P < 0.05).
CONCLUSION
The genetic characteristics of G. elata manifested regional and species-specific patterns, with the metabolic accumulations and antioxidant capacity of mature tubers exhibited regional variations. Specifically, multivariate ecological factors comprehensively influenced genetic characteristics. Temperature and moisture played pivotal roles in regulating the accumulations of proteins and phenolic glycosides, respectively. These findings underscore the significant impact of ecological factors on the shaping of G. elata, highlighting their crucial role in enhancing the quality of Chinese medicinal materials.
3.Chondrodysplasia complicated with infantile early-onset epilepsy and medial temporal lobe dysgenesis caused by the FGFR3 gene mutation: a case report and literature review
Shanying WEI ; Xinling TENG ; Li WANG ; Guangfei SUN ; Ruihan LIU ; Qinliang ZHENG ; Yanchao TIAN ; Qiubo LI
Chinese Journal of Applied Clinical Pediatrics 2025;40(7):537-541
The clinical data of an infant with chondrodysplasia accompanied by early-onset epilepsy and medial temporal lobe dysgenesis due to the FGFR3 gene mutation, who was treated in the Affiliated Hospital of Jining Medical University in March 2024 were retrospectively analyzed.The 9-day-old male infant presented with frequent apnea at 5 hours after birth and experienced first seizure at 24 hours after birth.Physical examination revealed short limbs.Magnetic resonance imaging (MRI) showed abnormal changes in bilateral temporal lobes, hippocampal structure and bilateral lateral ventricular temporal angles, so cerebral developmental abnormalities were considered in this child.Whole exome sequencing confirmed a heterozygous variation in the FGFR3 gene [c.1620C>A(p.Asn540Lys)].After receiving Phenobarbital monotherapy, the child still had frequent seizures, but the seizure was completely controlled after the additional use of Lvetiracetam.To August 2024, a total of 14 patients with achondroplasia, epilepsy, and medial temporal lobe dysplasia caused by FGFR3 gene mutations were identified.These patients typically experienced frequent seizures in early infancy, which could be accompanied by apnea and psychomotor retardation.MRI consistently showed abnormal development of bilateral temporal lobes and hippocampus.Seizures were hardly controlled by anti-seizure medications, and Phenobarbital was effective in some cases.Whole exome sequencing revealed gene variations of c.1620C>A or c. 1620C>G (p.Asn540Lys).Patients with achondroplasia caused by FGFR3 gene mutations may present with early-onset epilepsy and medial temporal lobe dysplasia.Early seizures are frequent and difficult to control, and Phenobarbital is effective in some cases.
4.Chondrodysplasia complicated with infantile early-onset epilepsy and medial temporal lobe dysgenesis caused by the FGFR3 gene mutation: a case report and literature review
Shanying WEI ; Xinling TENG ; Li WANG ; Guangfei SUN ; Ruihan LIU ; Qinliang ZHENG ; Yanchao TIAN ; Qiubo LI
Chinese Journal of Applied Clinical Pediatrics 2025;40(7):537-541
The clinical data of an infant with chondrodysplasia accompanied by early-onset epilepsy and medial temporal lobe dysgenesis due to the FGFR3 gene mutation, who was treated in the Affiliated Hospital of Jining Medical University in March 2024 were retrospectively analyzed.The 9-day-old male infant presented with frequent apnea at 5 hours after birth and experienced first seizure at 24 hours after birth.Physical examination revealed short limbs.Magnetic resonance imaging (MRI) showed abnormal changes in bilateral temporal lobes, hippocampal structure and bilateral lateral ventricular temporal angles, so cerebral developmental abnormalities were considered in this child.Whole exome sequencing confirmed a heterozygous variation in the FGFR3 gene [c.1620C>A(p.Asn540Lys)].After receiving Phenobarbital monotherapy, the child still had frequent seizures, but the seizure was completely controlled after the additional use of Lvetiracetam.To August 2024, a total of 14 patients with achondroplasia, epilepsy, and medial temporal lobe dysplasia caused by FGFR3 gene mutations were identified.These patients typically experienced frequent seizures in early infancy, which could be accompanied by apnea and psychomotor retardation.MRI consistently showed abnormal development of bilateral temporal lobes and hippocampus.Seizures were hardly controlled by anti-seizure medications, and Phenobarbital was effective in some cases.Whole exome sequencing revealed gene variations of c.1620C>A or c. 1620C>G (p.Asn540Lys).Patients with achondroplasia caused by FGFR3 gene mutations may present with early-onset epilepsy and medial temporal lobe dysplasia.Early seizures are frequent and difficult to control, and Phenobarbital is effective in some cases.
5.Study on dynamic changes of odor components in Cornus officinalis during processing by ultra -fast gas phase electronic nose
Yijie QIAN ; Wei WEI ; Guangfei ZHU ; Wenxia PI ; Tulin LU ; Chunqin MAO
China Pharmacy 2022;33(18):2182-2186
OBJECTIVE To establish the method for monitoring the dynamic changes of odor components in Cornus officinalis during processing . METHODS The decoction pieces of C. officinalis with different processing time were prepared by the wine steaming method . The dynamic changes of odor components were obtained by using ultra -fast gas electronic nose ;odor components were identified by comparing with AroChemBase database ;the dynamic changes of odor compounds were analyzed in combination with peak area ,and the chemical pattern recognition analysis were carried out . RESULTS A total of 12 common peaks of odor components were identified in the fingerprints of raw C. officinalis,and 21 in the fingerprints of decoction pieces of C. officinalis. Eight odor components with the high proportion of peak area during processing were ethanol , isopropyl alcohol , 2- methylpropylaldehyde,ethyl acetate ,2-methylbutanal,isoamyl alcohol ,2-hexanol and furfural ,among which ,the peak areas of ethanol,isoamyl alcohol and 2-hexanol showed a trend of first increasing and then decreasing ;at 24 h of processing ,their peak areas were still higher than those of raw products . The peak areas of ethyl acetate ,2-methylbutanal and furfural nearly increased with the increase of processing time . Variable importance in projection of above eight odor components were all greater than 1. CONCLUSIONS The method is established for monitoring the dynamic changes of odor components of C. officinalis during processing. Eight odor components such as ethanol can be used as monitoring indicators of C. officinalis dring processing .
6.Integrated metabolomic and transcriptomic analyses revealed the distribution of saponins in .
Guangfei WEI ; Linlin DONG ; Juan YANG ; Lianjuan ZHANG ; Jiang XU ; Feng YANG ; Ruiyang CHENG ; Ran XU ; Shilin CHEN
Acta Pharmaceutica Sinica B 2018;8(3):458-465
is famous for its important therapeutic effects. Saponins are bioactive compounds found in different parts and developmental stages of plants. Thus, it is urgently to study saponins distribution in different parts and growth ages of plants. In this study, potential biomarkers were found, and their chemical characteristic differences were revealed through metabolomic analysis. High-performance liquid chromatography data indicated the higher content of saponins (, Rg1, Re, Rd, and Rb1) in the underground parts than that in the aerial parts. 20()-Protopanaxadiol saponins were mainly distributed in the aerial parts. Additionally, the total saponin content in the 3-year-old plant (188.0 mg/g) was 1.4-fold higher than that in 2-year-old plant (130.5 mg/g). The transcriptomic analysis indicated the tissue-specific transcription expression of genes, namely, , , , , and , which encoded critical synthases in saponin biosyntheses. These genes showed similar expression patterns among the parts of plants. The expression levels of these genes in the flowers and leaves were 5.2fold higher than that in the roots and fibrils. These results suggested that saponins might be actively synthesized in the aerial parts and transformed to the underground parts. This study provides insights into the chemical and genetic characteristics of to facilitate the synthesis of its secondary metabolites and a scientific basis for appropriate collection and rational use of this plant.
7.Rhizospheric microbial communities are driven by at different growth stages and biocontrol bacteria alleviates replanting mortality.
Linlin DONG ; Jiang XU ; Lianjuan ZHANG ; Ruiyang CHENG ; Guangfei WEI ; He SU ; Juan YANG ; Jun QIAN ; Ran XU ; Shilin CHEN
Acta Pharmaceutica Sinica B 2018;8(2):272-282
The cultivation of plants is hindered by replanting problems, which may be caused by plant-driven changes in the soil microbial community. Inoculation with microbial antagonists may efficiently alleviate replanting issues. Through high-throughput sequencing, this study revealed that bacterial diversity decreased, whereas fungal diversity increased, in the rhizosphere soils of adult ginseng plants at the root growth stage under different ages. Few microbial community, such as , Cytophagaceae, , , Sphingomonadaceae, and Zygomycota, were observed; the relative abundance of microorganisms, namely, , Enterobacteriaceae, , Cantharellales, , , and Chytridiomycota, increased in the soils of adult ginseng plants compared with those in the soils of 2-year-old seedlings. 50-1, a microbial antagonist against the pathogenic , was isolated through a dual culture technique. These bacteria acted with a biocontrol efficacy of 67.8%. The ginseng death rate and abundance decreased by 63.3% and 46.1%, respectively, after inoculation with 50-1. Data revealed that microecological degradation could result from ginseng-driven changes in rhizospheric microbial communities; these changes are associated with the different ages and developmental stages of ginseng plants. Biocontrol using microbial antagonists alleviated the replanting problem.
8.Discussion on Pollution-free Production Technology of Carthamus tinctorius
Lili SU ; Guangfei WEI ; Mengzhi LI ; Xiangxiao MENG ; Yaru XU ; Huanhuan WANG ; Gang LI ; Linlin DONG
World Science and Technology-Modernization of Traditional Chinese Medicine 2018;20(6):1032-1039
The problems of non-standard use of pesticides, and excessive pesticide residues and excessive heavy metal, etc. are common in the productive process of safflower (Carthamus tinctorius) and they are the factors restricting the sustainable development of safflower industry. Pollution-free production is an effective measure to ensure high quality of safflower. This paper summarized the environment of production area, selection of improved varieties for the production in the local places and its characteristics, the standardized comprehensive agronomic management and pollution-free rational fertilization technology. Additionally, the pollution-free control of safflower pests and diseases should follow the principle of priority to prevention and comprehensive prevention. Agricultural, biological and physical control should be preferred to use, and be combined with safe and low toxicity of chemical control. The standardization and industrialization of safflower production were realized by the construction of a comprehensive control technology system of pests and diseases of pollution-free safflower, which promoted the healthy development of the safflower plantation industry and achieved pollution-free standards.
9.Study Progress of Components of Notoginsenoside and the Affecting Factors
Guangfei WEI ; Feng YANG ; Yaru XU ; Huanhuan WANG ; Lili SU ; Can YUAN ; Linlin DONG
World Science and Technology-Modernization of Traditional Chinese Medicine 2018;20(10):1876-1881
Panax notoginseng is a traditional Chinese medicinal herb in China. Due to its widespread pharmacology and significant clinical effect, the demand of Panax notoginseng is increasing surprisingly. Saponins are effective components in Radix Notoginseng. It has the effect of stopping bleeding and dispelling blood stasis. The content of saponins is affected by the factors such as location, variety and origin. This paper mainly introduced the notoginsenoside in different parts, the factors (origin and varieties) affecting the contents of notoginsenoside. A standard and pollution-free cultivation system of Panax notoginseng was established to help to cultivate the high-yield, high-quality and pollution-free P.notoginseng, which can provide the basis for choosing reasonable administration parts and provide the references for the development and utilization of Panax notoginseng.
10.Pivotal Technology of Panax notoginseng Continuous Cropping
Zhongjian CHEN ; Fugang WEI ; Linlin DONG ; Yong WANG ; Chaoliang WANG ; Shaozhou YANG ; Yuqin SUN ; Guangfei WEI ; Lianjuan ZHANG ; Yuqi YU ; Shilin CHEN
World Science and Technology-Modernization of Traditional Chinese Medicine 2017;19(10):1629-1634
Research teams work together to solve the technical bottleneck in the Panax notoginseng industry.These research directions mainly focus on breeding of new variety,alleviating the continuous cropping obstacles,building standard system and so on.We used methods such as biotechnology,information technology and so on,to realize digitization,network and intellectualization in the process of selection of producing areas,field management,harvest storage,solved key issues of the precise selection of producing areas,variety breeding,soil improvement,fertilization management,and realized the precision and optimization of ginseng cultivation.We built the composite technology system of pollution-free notoginseng.This technology system mainly contained the breeding of new cultivar,the composite technology of soil improvement,the cultivation system of pollution-free notoginseng and quality traceability system.A new disease-resistant cultivar of notoginseng was bred,which offered feasibility for the notoginseng continuous cropping.We first presented composite improvement technology of notoginseng continuous cropping soil.This improvement technology has been used in the field.This technology system of soil restoration and improvement guaranteed notoginseng continuous cropping.A first standard system of pollution-free notoginseng was issued.It established standard of high-quality notoginseng materials.Finally,quality traceability system of notoginseng was finished,which safeguarded the controllable quality.This composite technology system offers references for the cultivation of other Chinese herbal medicines.

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