1.Genomic variant surveillance of SARS-CoV-2 positive specimens using a direct PCR product sequencing surveillance (DPPSS) method.
Nicole Ann L. Tuberon ; Francisco M. Heralde III ; Catherine C. Reportoso ; Arturo L. Gaitano III ; Wilmar Jun O. Elopre ; Kim Claudette J. Fernandez
Acta Medica Philippina 2026;60(1):57-68
BACKGROUND AND OBJECTIVE
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) as the causative agent of COVID-19 has significantly challenged the public health landscape in late 2019. After almost 3 years of the first ever SARS-CoV-2 case, the World Health Organization (WHO) declared the end of this global health emergency in May 2023. Although, despite the subsequent drop of COVID-19 cases, the SARS-CoV-2 infection still exhibited multiple waves of infection, primarily attributed to the appearance of new variants. Five of these variants have been classified as Variants of Concern (VOC): Alpha, Beta, Gamma, Delta, and the most recent, Omicron. Therefore, the development of methods for the timely and accurate detection of viral variants remains fundamental, ensuring an ongoing and effective response to the disease. This study aims to evaluate the feasibility of the application of an in-house approach in genomic surveillance for the detection of SARS-CoV-2 variants using in silico designed primers.
METHODSThe primers used for the study were particularly designed based on conserved regions of certain genes in the virus, targeting distinct mutations found in known variants of SARS-CoV-2. Viral RNA extracts from nasopharyngeal samples (n=14) were subjected to quantitative and qualitative tests (Nanodrop and AGE). Selected samples were then analyzed by RT-PCR and amplicons were submitted for sequencing. Sequence alignment analysis was carried out to identify the prevailing COVID-19 variant present in the sample population.
RESULTSThe study findings demonstrated that the in-house method was able to successfully amplify conserved sequences (spike, envelope, membrane, ORF1ab) and enabled identification of the circulating SARS-CoV-2 variant among the samples. Majority of the samples were identified as Omicron variant. Three out of four designed primers effectively bound into the conserved sequence of target genes present in the sample, revealing the specific SARSCoV-2 variant. The detected mutations characterized for Omicron found in the identified lineages included K417N, S477N, and P681H which were also identified as mutations of interest. Furthermore, identification of the B.1.448 lineage which was not classified in any known variant also provided the potential of the developed in-house method in detecting unknown variants of COVID-19.
CONCLUSIONAmong the five VOCs, Omicron is the most prevalent and dominant variant. The in-house direct PCR product sequencing surveillance (DPPSS) method provided an alternative platform for SAR-CoV-2 variant analysis which is accessible and affordable than the conventional diagnostic surveillance methods and the whole genome sequencing. Further evaluation and improvements on the oligonucleotide primers may offer significant contribution to the development of a specific and direct PCRbased detection of new emerging COVID-19 variants.
Sars-cov-2 ; Polymerase Chain Reaction ; Dna Primers ; Oligonucleotide Primers ; Computer Simulation ; Conserved Sequence ; Coronavirus ; Covid-19 ; Disease ; Emergencies ; Evaluation Studies As Topic ; Genes ; Genome ; Global Health ; Health ; Identification (psychology) ; Infection ; Infections ; Membranes ; Methods ; Mutation ; Oligonucleotides ; Organizations ; Population ; Public Health ; Rna ; Rna, Viral ; Sars Virus ; Sequence Alignment ; Severe Acute Respiratory Syndrome ; Syndrome ; Viruses ; Whole Genome Sequencing ; World Health Organization
2.Oncology-related emergencies discharged from the emergency department.
Si-Hua Yvonne GOH ; Juin Jie NG ; Shi-En Joanna CHAN ; Wei-Lin Tallie CHUA ; Venkataraman ANANTHARAMAN
Singapore medical journal 2025;66(2):97-101
INTRODUCTION:
Cancer patients attending emergency departments (EDs) often present with acute symptoms and are frequently admitted. This study aimed to characterise the profile of oncology patients who were discharged from the ED.
METHODS:
This was a retrospective audit of patients with cancer-related diagnoses who presented to the ED at the Singapore General Hospital (SGH) over a 6-month period from 1 October 2018 to 31 March 2019 and were directly discharged from the ED. Data was extracted from the hospital's electronic medical record system.
RESULTS:
Of the 492 participants included in the study, the majority were triaged as Priority 2 (61.4%), while 30.7% were triaged as Priority 3, 6.9% as Priority 1 and 1.0% as Priority 4. There was no statistical difference between the National Early Warning scores across the different triage categories in these patients. The most common complaint was (44.3%), followed by genitourinary symptoms (19.5%) and those related to devices, catheters or stomas (17.3%). More investigations of all types were done for patients being managed in Priority 1 (57.6%) than in the other triage categories (40.1% for Priority 2, 23.2% for Priority 3 and 12.0% for Priority 4). Treatment procedures carried out were mainly symptomatic (analgesics, antiemetics, proton pump inhibitors) for 79.8% of the patients. There were no significant differences in the proportion of patients requiring various treatment modalities among the triage categories.
CONCLUSION
Selected oncological patients may potentially be managed in an ambulatory setting.
Humans
;
Emergency Service, Hospital/statistics & numerical data*
;
Retrospective Studies
;
Female
;
Neoplasms/diagnosis*
;
Male
;
Singapore
;
Patient Discharge/statistics & numerical data*
;
Middle Aged
;
Aged
;
Triage
;
Adult
;
Emergencies
;
Aged, 80 and over
3.Wunderlich syndrome in a gravid 31-year-old with tuberous sclerosis complex and bilateral angiomyolipoma: A case report.
Bren G. Oliva ; Enrique C. Tenazas
Philippine Journal of Urology 2025;35(2):121-126
Wunderlich Syndrome is a rare potentially life-threatening phenomenon that involves spontaneous non-traumatic retroperitoneal hemorrhage. At present, identifying the course of conservative management in these patients, especially in pregnancy, has not been clinically established. Presented here is a known case of Tuberous Sclerosis Complex with a Bilateral, 10cm Angiomyolipoma in a 31-year-old female, initially managed with active surveillance. At 27 weeks of pregnancy, she presented with a sudden onset of left flank pain with a hematocrit of 22%. Anemia was corrected with blood transfusions. A contrast-enhanced MRI of the abdomen showed a large subcapsular perirenal hematoma of the left kidney. Renal angioembolization of the bleeding segmental renal artery was done. The patient was conservatized until 37 weeks of pregnancy and underwent cesarean section delivery.
Four months after angioembolization, she had a recurrence of the left flank pain associated with gross hematuria and hypovolemic shock. The patient underwent emergency renal exploration of the left kidney via a transabdominal approach. Three liters of hemoperitoneum and a large expanding left retroperitoneal hematoma were noted intraoperatively. Early vascular control before nephrectomy of the left kidney was done. The postoperative course was unremarkable and the patient was discharged with improved condition.
This case displays a unique course in the management of a bleeding angiomyolipoma especially during pregnancy. Renal angioembolization can aid in achieving the age of viability in pregnancy. However, close monitoring for rebleeding should be kept in mind. A lower threshold for conservative management should be utilized when patients have a previous history of bleeding.
Human ; Female ; Adult: 25-44 Yrs Old ; Abdomen ; Anemia ; Angiomyolipoma ; Arteries ; Blood ; Blood Transfusion ; Cesarean Section ; Conservative Treatment ; Emergencies ; Female ; Flank Pain ; Hematocrit ; Hematoma ; Hematuria ; Hemoperitoneum ; Hemorrhage ; History ; Hypovolemia ; Insemination, Artificial, Heterologous ; Kidney ; Life ; Nephrectomy ; Pain ; Patients ; Pregnancy ; Recurrence ; Renal Artery ; Research Report ; Sclerosis ; Shock ; Syndrome ; Tuberous Sclerosis ; Watchful Waiting
4.The perception of adults in Manila about the accessibility, availability and affordability of private and public healthcare services for neurological emergencies.
Aedrielyn PICHAY ; Alessandra Beatrice PEÑ ; A ; Jeanina Lhainey PISUEÑ ; A ; Sabrina PEÑ ; A ; Emy Eloisa PIANO ; Nilo DELOS SANTOS
Journal of Medicine University of Santo Tomas 2025;9(S1):62-74
METHODOLOGY
A survey was conducted among 463 adults in Manila, achieving a valid response rate of 92.3% (427 responses analyzed). Participants represented diverse socioeconomic backgrounds. The survey explored perceptions regarding AAA of healthcare services for neurological emergencies.
RESULTSAcross income levels (poor, middle, rich), participants favored private hospitals for accessibility and convenience, such as emergency room access and prompt care. Private hospitals were also preferred for availability of diagnostic equipment, medications, specialist expertise and 24/7 care. Public hospitals, however, were preferred for affordability, particularly for emergency visits, medications, tests, neurologist consultations and ambulance services.
DISCUSSIONFindings reveal a clear preference split: private hospitals are valued for accessibility and resources, while public hospitals remain the affordable choice. This reflects ongoing systemic and socioeconomic challenges in Manila’s healthcare landscape.
CONCLUSIONThe study provides actionable insights for policymakers and healthcare providers seeking to improve emergency neurological care. Addressing gaps in access and affordability can enhance patient outcomes and satisfaction while promoting more equitable healthcare delivery.
Human ; Male ; Female ; Adolescent: 13-18 Yrs Old ; Young Adult: 19-24 Yrs Old ; Adult: 25-44 Yrs Old ; Middle Aged: 45-64 Yrs Old ; Adult ; Emergencies ; Perception
5.Perioperative emergency laparotomy pathway for patients undergoing emergency laparotomy: A propensity score matched study.
Joel Wen Liang LAU ; Janardhan BALIGA ; Faheem KHAN ; Ying Xin TEO ; Jonathan Ming Jie YEO ; Vincent Zhiwei YEOW ; Christine Xia WU ; Stephanie TEO ; Tracy Jia Hui GOH ; Philip IAU
Annals of the Academy of Medicine, Singapore 2024;53(12):713-723
INTRODUCTION:
Emergency laparotomy (EL) is associated with high morbidity and mortality, often exceeding 10%. This study evaluated the impact of the EMergency Laparotomy Audit (EMLA) interdisciplinary perioperative pathway on patient outcomes, hospital costs and length of stay (LOS) within a single centre.
METHOD:
A prospective cohort study was conducted from August 2020 to July 2023. The intervention team included specialist clinicians, hospital administrators and an in-hospital quality improvement team. Patients who underwent EL were divided into a pre-intervention control group (n=136) and a post-intervention group (n=293), and an 8-item bundle was implemented. Propensity scoring with a 1:1 matching method was utilised to reduce confounding and selection bias. The primary outcomes examined were LOS, hospitalis-ation costs and surgical morbidity, while secondary outcomes included 30-day mortality and adherence to the intervention protocol.
RESULTS:
The utilisation of the EMLA perioperative care bundle led to a significant reduction in surgical complications (34.8% to 20.6%, P<0.01), a decrease in LOS by 3.3 days (15.4 to 12.1 days, P=0.03) and lower hospitalisation costs (SGD 40,160 to 30,948, P=0.04). Compliance with key interventions also showed improvement. However, there was no difference in 30-day mortality.
CONCLUSION
This study offers insights on how surgical units can implement systemic perioperative changes to improve outcomes for patients undergoing emergency laparotomy.
Humans
;
Laparotomy/methods*
;
Propensity Score
;
Female
;
Male
;
Prospective Studies
;
Length of Stay/statistics & numerical data*
;
Middle Aged
;
Hospital Costs/statistics & numerical data*
;
Postoperative Complications/epidemiology*
;
Aged
;
Emergencies
;
Perioperative Care/methods*
;
Critical Pathways
;
Singapore
;
Adult
6.Emergency Management of Medical Equipment in Designated Hospitals for Public Health Emergencies.
Wanjing SHA ; Deqing SUN ; Yanyan ZHAO
Chinese Journal of Medical Instrumentation 2023;47(4):464-467
Medical supply is a key resource for responding to public health emergencies and maintaining people's lives and health. As the medical equipment management department, the medical devices department is mainly responsible for the procurement, supply, technical support, management and coordination of medical equipment and medical consumables, playing an important role in epidemic prevention and control. Through the analysis of the expansion cases of designated hospitals, the experience of emergency management of medical equipment has been accumulated, which has strong practicability and replicability.
Humans
;
Public Health
;
Emergencies
;
Hospitals
;
Epidemics
7.Improvement of China's legal system for public health emergency management from the perspective of lifecycle management.
Kai Yuan CHEN ; Chen Guang WANG ; Yi ZHANG ; Rong Xin HE ; Jin Yu HE ; Ji Ming ZHU ; Wan Nian LIANG
Chinese Journal of Epidemiology 2023;44(5):689-693
A crucial lesson gained through the pandemic preparedness and response to COVID-19 is that all measures for epidemic control must be law-based. The legal system is related not only to public health emergency management per se but also to all aspects of the institutional supporting system throughout the lifecycle. Based on the lifecycle emergency management model, this article analyses the problems of the current legal system and the potential solutions. It is suggested that the lifecycle emergency management model shall be followed to establish a more comprehensive public health legal system and to gather the intelligence and consensus of experts with different expertise, including epidemiologists, sociologists, economists, jurist and others, which will collaboratively promote the science-based legislation in the field of epidemic preparedness and response for the establishment of a comprehensive legal system for public health emergency management and with Chinese characteristics.
Humans
;
China
;
Pandemics/prevention & control*
;
Public Health
;
Emergencies
;
Disaster Planning
8.Expert consensus on standardized chair-side first aid of medical emergencies during dental management.
Chinese Journal of Stomatology 2022;57(5):441-454
The medical emergencies during oral diagnosis and treatment needs urgent treatment. If the emergent situations are not managed immediately and correctly, the consequences may be lethal to the patients. Due to the actuality that most of the dental clinicians are insufficient in medical first aid theoretically and practically, the Society of Stomatological Emergency, Chinese Stomatological Association organized some domestic famous dental and medical experts to write the present clinical diagnosis and treatment expert consensus on the basis of repeated discussion.The consensus aims to guide the dental clinician to take correct steps in the process of chair-side first aid in case of medical emergency, so as to reduce the risks, to prevent medical emergencies and to ensure the life safety and health of patients.
Consensus
;
Dental Care
;
Emergencies
;
First Aid
;
Humans
;
Oral Medicine
9.Large-scale Hospital Material Supply Chain Practice under Closed-loop Management.
Chinese Journal of Medical Instrumentation 2022;46(3):346-349
In the context of public health emergencies, a Hospital used the existing SPD supply chain model as a basis, research and practice proceeded simultaneously and formed a set of "three-group three-port" emergency plan by itself. The program played a positive role and effectiveness in this emergency incident, assisting the hospital to obtain a valuable experience in closed-loop management of emergency supplies. This article elaborated on how the hospital can supply materials in case of emergency medical supplies shortage after emergencies by focusing on the three groups of closed-loop working group, inventory management group, and material procurement group, and the three ports of material storage port, logistics receiving and dispatching port, and closed-loop releasing port. In the case of emergency medical supplies being in short supply after emergencies, how can hospitals ensure adequate and balanced supply of supplies; barrier-free demand information; command and dispatch without chaos and reasonable deployment; materials receiving and dispatching are efficient and distributed in an orderly manner.
Emergencies
;
Equipment and Supplies, Hospital
;
Hospitals
;
Humans
;
Public Health
10.Improving China's public health emergency response based on One Health theory.
Jie HE ; Zhao Yu GUO ; Xiao Nong ZHOU
Chinese Journal of Epidemiology 2022;43(10):1545-1553
With the progress of globalization and the improvement of transportation, a public health emergency can spread across country's boundary in a short period of time from its original place to other areas or regions, posing public health threatens. Public health emergencies not only affect human-animal/plant-environmental health, but also have long-term implications for social development, so the public health emergency response has gone beyond general public health and requires an integrated and comprehensive One Health approach. This paper analyzes the problems and shortcomings of China's current public health emergency response system in a view of One Health and put forward the recommendations based on One Health concept on integrality, collaboration, development and sustainability of public health emergency response. These recommendations can be used as reference to further optimize the response system of public health emergencies in China.
Animals
;
Humans
;
One Health
;
Public Health
;
Emergencies
;
Environmental Health
;
China


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