1.Live biotherapeutic products: the forefront of innovative drug development driven by biotechnology.
Danyang ZOU ; Yumeng DONG ; Jingyu CHEN
Chinese Journal of Biotechnology 2023;39(4):1275-1289
As human microbiome research advances, a large body of evidence shows that microorganisms are closely related to human health. Probiotics were discovered and used as foods or dietary supplements with health benefits in the last century. Microorganisms have shown broader application prospects in human health since the turn of the century, owing to the rapid development of technologies such as microbiome analysis, DNA synthesis and sequencing, and gene editing. In recent years, the concept of "next-generation probiotics" has been proposed as new drugs, and microorganisms are considered as "live biotherapeutic products (LBP)". In a nutshell, LBP is a living bacterial drug that can be used to prevent or treat certain human diseases and indications. Because of its distinct advantages, LBP has risen to the forefront of drug development research and has very broad development prospects. This review introduces the varieties and research advances on LBP from a biotechnology standpoint, followed by summarizing the challenges and opportunities for LBP clinical implementations, with the aim to facilitate LBP development.
Humans
;
Probiotics
;
Dietary Supplements
;
Bacteria
;
Drug Development
;
Biotechnology
2.Advances in machine learning for predicting protein functions.
Yanfei CHI ; Chun LI ; Xudong FENG
Chinese Journal of Biotechnology 2023;39(6):2141-2157
Proteins play a variety of functional roles in cellular activities and are indispensable for life. Understanding the functions of proteins is crucial in many fields such as medicine and drug development. In addition, the application of enzymes in green synthesis has been of great interest, but the high cost of obtaining specific functional enzymes as well as the variety of enzyme types and functions hamper their application. At present, the specific functions of proteins are mainly determined through tedious and time-consuming experimental characterization. With the rapid development of bioinformatics and sequencing technologies, the number of protein sequences that have been sequenced is much larger than those can be annotated, thus developing efficient methods for predicting protein functions becomes crucial. With the rapid development of computer technology, data-driven machine learning methods have become a promising solution to these challenges. This review provides an overview of protein function and its annotation methods as well as the development history and operation process of machine learning. In combination with the application of machine learning in the field of enzyme function prediction, we present an outlook on the future direction of efficient artificial intelligence-assisted protein function research.
Artificial Intelligence
;
Machine Learning
;
Proteins/genetics*
;
Computational Biology/methods*
;
Drug Development
3.Application and development of systems biology in computer-aided drug design.
Yu-Qing WANG ; Kong-Fa HU ; Chen-Jun HU
China Journal of Chinese Materia Medica 2023;48(11):2868-2875
With the advances in medicine, people have deeply understood the complex pathogenesis of diseases. Revealing the mechanism of action and therapeutic effect of drugs from an overall perspective has become the top priority of drug design. However, the traditional drug design methods cannot meet the current needs. In recent years, with the rapid development of systems biology, a variety of new technologies including metabolomics, genomics, and proteomics have been used in drug research and development. As a bridge between traditional pharmaceutical theory and modern science, computer-aided drug design(CADD) can shorten the drug development cycle and improve the success rate of drug design. The application of systems biology and CADD provides a methodological basis and direction for revealing the mechanism and action of drugs from an overall perspective. This paper introduces the research and application of systems biology in CADD from different perspectives and proposes the development direction, providing reference for promoting the application.
Humans
;
Systems Biology
;
Drug Design
;
Drug Development
;
Genomics
;
Medicine
4.Bioactive peptides from scorpion venoms: therapeutic scaffolds and pharmacological tools.
Kamau PETER MUIRURI ; Jian ZHONG ; Bing YAO ; Ren LAI ; Lei LUO
Chinese Journal of Natural Medicines (English Ed.) 2023;21(1):19-35
Evolution and natural selection have endowed animal venoms, including scorpion venoms, with a wide range of pharmacological properties. Consequently, scorpions, their venoms, and/or their body parts have been used since time immemorial in traditional medicines, especially in Africa and Asia. With respect to their pharmacological potential, bioactive peptides from scorpion venoms have become an important source of scientific research. With the rapid increase in the characterization of various components from scorpion venoms, a large number of peptides are identified with an aim of combating a myriad of emerging global health problems. Moreover, some scorpion venom-derived peptides have been established as potential scaffolds helpful for drug development. In this review, we summarize the promising scorpion venoms-derived peptides as drug candidates. Accordingly, we highlight the data and knowledge needed for continuous characterization and development of additional natural peptides from scorpion venoms, as potential drugs that can treat related diseases.
Animals
;
Scorpion Venoms/pharmacology*
;
Peptides/pharmacology*
;
Scorpions
;
Drug Development
;
Medicine, Traditional
5.Advances in modification and delivery of nucleic acid drugs.
Junfeng WANG ; Manman TAN ; Ying WANG ; Xiangrui LIU ; Aifu LIN
Journal of Zhejiang University. Medical sciences 2023;52(4):417-428
Nucleic acid-based drugs, such as RNA and DNA drugs, exert their effects at the genetic level. Currently, widely utilized nucleic acid-based drugs include nucleic acid aptamers, antisense oligonucleotides, mRNA, miRNA, siRNA and saRNA. However, these drugs frequently encounter challenges during clinical application, such as poor stability, weak targeting specificity, and difficulties in traversing physiological barriers. By employing chemical modifications of nucleic acid structures, it is possible to enhance the stability and targeting specificity of certain nucleic acid drugs within the body, thereby improving delivery efficiency and reducing immunogenicity. Moreover, utilizing nucleic acid drug carriers can facilitate the transportation of drugs to lesion sites, thereby aiding efficient intracellular escape and promoting drug efficacy within the body. Currently, commonly employed delivery carriers include virus vectors, lipid nanoparticles, polymer nanoparticles, inorganic nanoparticles, protein carriers and extracellular vesicles. Nevertheless, individual modifications or delivery carriers alone are insufficient to overcome numerous obstacles. The integration of nucleic acid chemical modifications with drug delivery systems holds promise for achieving enhanced therapeutic effects. However, this approach also presents increased technical complexity and clinical translation costs. Therefore, the development of nucleic acid drug carriers and nucleic acid chemical modifications that are both practical and simple, while maintaining high efficacy, low toxicity, and precise nucleic acid delivery, has become a prominent research focus in the field of nucleic acid drug development. This review comprehensively summarizes the advancements in nucleic acid-based drug modifica-tions and delivery systems. Additionally, strategies to enhance nucleic acid drug delivery efficiency are discussed, with the aim of providing valuable insights for the translational application of nucleic acid drugs.
Nucleic Acids
;
RNA, Small Interfering/genetics*
;
Drug Carriers
;
Drug Delivery Systems
;
Drug Development
6.Advances of modified IL-2 molecules in drug development.
Lijing HUANG ; Xiaohan MA ; Chenhui LI ; Hongquan WANG
Chinese Journal of Biotechnology 2022;38(9):3279-3290
Interleukin-2 (IL-2) is one of the most important regulators in immune system, as it plays an essential part both in immune activation and suppression. However, as the first immunotherapy drug approved for the treatment of cancer, IL-2 is limited in clinical application by the serious adverse reactions. The long-felt needs in clinical practice, including prolonged half-lives, T cell subset specificity, and toxicity reduction can be achieved by polyethylene glycol (PEG) modification, Fc fusing, or protein mutation of IL-2. NKTR-214, the most advanced IL-2 pathway-targeted agent in clinical development for oncology, shows exciting results in treatment of melanoma in combination with nivolumab. At the same time, many more other modified molecules against cancer and autoimmune diseases are being tested in clinical research, an exciting future lying ahead for IL-2 therapeutics.
Drug Development
;
Humans
;
Immunotherapy/methods*
;
Interleukin-2/therapeutic use*
;
Melanoma/drug therapy*
;
Nivolumab/therapeutic use*
;
Polyethylene Glycols
7.Pathological Networks Involving Dysmorphic Neurons in Type II Focal Cortical Dysplasia.
Yijie SHAO ; Qianqian GE ; Jiachao YANG ; Mi WANG ; Yu ZHOU ; Jin-Xin GUO ; Mengyue ZHU ; Jiachen SHI ; Yiqi HU ; Li SHEN ; Zhong CHEN ; Xiao-Ming LI ; Jun-Ming ZHU ; Jianmin ZHANG ; Shumin DUAN ; Jiadong CHEN
Neuroscience Bulletin 2022;38(9):1007-1024
Focal cortical dysplasia (FCD) is one of the most common causes of drug-resistant epilepsy. Dysmorphic neurons are the major histopathological feature of type II FCD, but their role in seizure genesis in FCD is unclear. Here we performed whole-cell patch-clamp recording and morphological reconstruction of cortical principal neurons in postsurgical brain tissue from drug-resistant epilepsy patients. Quantitative analyses revealed distinct morphological and electrophysiological characteristics of the upper layer dysmorphic neurons in type II FCD, including an enlarged soma, aberrant dendritic arbors, increased current injection for rheobase action potential firing, and reduced action potential firing frequency. Intriguingly, the upper layer dysmorphic neurons received decreased glutamatergic and increased GABAergic synaptic inputs that were coupled with upregulation of the Na+-K+-Cl- cotransporter. In addition, we found a depolarizing shift of the GABA reversal potential in the CamKII-cre::PTENflox/flox mouse model of drug-resistant epilepsy, suggesting that enhanced GABAergic inputs might depolarize dysmorphic neurons. Thus, imbalance of synaptic excitation and inhibition of dysmorphic neurons may contribute to seizure genesis in type II FCD.
Animals
;
Drug Resistant Epilepsy/surgery*
;
Epilepsy/pathology*
;
Malformations of Cortical Development/pathology*
;
Malformations of Cortical Development, Group I
;
Mice
;
Neurons/pathology*
;
Seizures/pathology*
8.Application of MIDD in Clinical Research of Antitumor Drugs.
Chinese Journal of Lung Cancer 2022;25(7):487-492
The antitumor drug has become one of the focused areas in new drug research and development. Their clinical research generally consumes a long period of time, with high cost and high risk. Model-informed drug development (MIDD) integrates and quantitatively analyzes physiological, pharmacological, and disease progression information through modeling and simulation, which can reduce the cost of drug development and improve the efficiency of clinical research. In this essay, Osimertinib and Pembrolizumab are given as examples to illustrate the specific application of MIDD in different phases of clinical research, aiming to provide references for the application of MIDD to guide the clinical research of antitumor drugs.
.
Antineoplastic Agents/therapeutic use*
;
Drug Development
;
Humans
;
Lung Neoplasms
9.Challenges of Investigator-initiated Clinical Trials to Support the New Drug Development.
Chinese Journal of Lung Cancer 2022;25(7):511-516
A large number of investigator-initiated clinical trials (IIT) were conducted in China, some of them should play an important supporting role in new drug development. Due to the large number, small scale and uneven quality of IIT in China, especially a big gap between the IIT and industry-sponsored trials in terms of protocol design, quality management and ethical review, many IIT can't be used to support the new drug development. Therefore, it is necessary for regulatory authorities, sponsors, research institutions, ethics committees and researchers to improve their understanding of the role of IIT. In order to support the new drug development with high-quality IIT, formulating supervising system, establishing an effective quality management system, enhancing the training of researchers and improving the ability of ethical review should be implemented effectively.
.
China
;
Drug Development
;
Humans
;
Lung Neoplasms
;
Research Personnel
10.Caffeine Exposure Causes Immune Dysfunction and Intrauterine Growth Restriction Retardation in Rats.
Wen Zhong ZHANG ; Na Na SUN ; Yang HU ; Yu CAO ; Sheeks AMBER
Biomedical and Environmental Sciences 2022;35(2):170-173
Animals
;
Caffeine/adverse effects*
;
Central Nervous System Stimulants/adverse effects*
;
Dose-Response Relationship, Drug
;
Female
;
Fetal Growth Retardation/chemically induced*
;
Immune System Diseases/chemically induced*
;
Male
;
Organ Size/drug effects*
;
Pregnancy
;
Pregnancy Complications/immunology*
;
Rats
;
Spleen/growth & development*

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