1.Deep space environment empowering drug design and development.
Yanpeng FANG ; Bin FENG ; Weizheng LI ; Liyong ZHU ; Fei CHEN ; Wenbin ZENG
Journal of Central South University(Medical Sciences) 2025;50(8):1371-1384
The unique characteristics of the deep space environment, microgravity, cosmic radiation, and extreme temperature fluctuations, are emerging as major driving forces for pharmaceutical innovation. These factors provide new avenues for optimizing drug formulations, improving crystal structure quality, and accelerating the discovery of therapeutic targets. Advances in deep space research not only help overcome critical bottlenecks in terrestrial drug development but also promote progress in structure-based drug design and deepen understanding of cellular stress-response mechanisms. Current progress in space-based pharmaceutical research primarily includes the study of disease mechanisms under microgravity, protein crystallization in microgravity, and drug development utilizing deep space radiation and resources. However, the operational complexity, high costs, and limited data reproducibility of space experiments remain key challenges hindering widespread application. Looking ahead, with the integration of automation, artificial intelligence analysis, and on-orbit manufacturing, deep space drug development is expected to achieve greater scalability and precision, opening a new frontier in biopharmaceutical science.
Drug Design
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Drug Development/methods*
;
Humans
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Weightlessness
;
Space Flight
;
Artificial Intelligence
;
Extraterrestrial Environment
2.Dysregulated Pathways During Pregnancy Predict Drug Candidates in Neurodevelopmental Disorders.
Huamin YIN ; Zhendong WANG ; Wenhang WANG ; Jiaxin LIU ; Yirui XUE ; Li LIU ; Jingling SHEN ; Lian DUAN
Neuroscience Bulletin 2025;41(6):987-1002
Maternal health during pregnancy has a direct impact on the risk and severity of neurodevelopmental disorders (NDDs) in the offspring, especially in the case of drug exposure. However, little progress has been made to assess the risk of drug exposure during pregnancy due to ethical constraints and drug use factors. We collected and manually curated sub-pathways and pathways (sub-/pathways) and drug information to propose an analytical framework for predicting drug candidates. This framework linked sub-/pathway activity and drug response scores derived from gene transcription data and was applied to human fetal brain development and six NDDs. Further, specific and pleiotropic sub-/pathways/drugs were identified using entropy, and sex bias was analyzed in conjunction with logistic regression and random forest models. We identified 19 disorder-associated and 256 regionally pleiotropic and specific candidate drugs that targeted risk sub-/pathways in NDDs, showing temporal or spatial changes across fetal development. Moreover, 5443 differential drug-sub-/pathways exhibited sex-biased differences after filling in the gender labels. A user-friendly NDDP visualization website ( https://ndd-lab.shinyapps.io/NDDP ) was developed to allow researchers and clinicians to access and retrieve data easily. Our framework overcame data gaps and identified numerous pleiotropic and specific candidates across six disorders and fetal developmental trajectories. This could significantly contribute to drug discovery during pregnancy and can be applied to a wide range of traits.
Humans
;
Female
;
Pregnancy
;
Neurodevelopmental Disorders/metabolism*
;
Male
;
Prenatal Exposure Delayed Effects
;
Fetal Development/drug effects*
;
Drug Discovery/methods*
;
Brain/metabolism*
3.Advances in machine learning for predicting protein functions.
Yanfei CHI ; Chun LI ; Xudong FENG
Chinese Journal of Biotechnology 2023;39(6):2141-2157
Proteins play a variety of functional roles in cellular activities and are indispensable for life. Understanding the functions of proteins is crucial in many fields such as medicine and drug development. In addition, the application of enzymes in green synthesis has been of great interest, but the high cost of obtaining specific functional enzymes as well as the variety of enzyme types and functions hamper their application. At present, the specific functions of proteins are mainly determined through tedious and time-consuming experimental characterization. With the rapid development of bioinformatics and sequencing technologies, the number of protein sequences that have been sequenced is much larger than those can be annotated, thus developing efficient methods for predicting protein functions becomes crucial. With the rapid development of computer technology, data-driven machine learning methods have become a promising solution to these challenges. This review provides an overview of protein function and its annotation methods as well as the development history and operation process of machine learning. In combination with the application of machine learning in the field of enzyme function prediction, we present an outlook on the future direction of efficient artificial intelligence-assisted protein function research.
Artificial Intelligence
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Machine Learning
;
Proteins/genetics*
;
Computational Biology/methods*
;
Drug Development
4.Advances of modified IL-2 molecules in drug development.
Lijing HUANG ; Xiaohan MA ; Chenhui LI ; Hongquan WANG
Chinese Journal of Biotechnology 2022;38(9):3279-3290
Interleukin-2 (IL-2) is one of the most important regulators in immune system, as it plays an essential part both in immune activation and suppression. However, as the first immunotherapy drug approved for the treatment of cancer, IL-2 is limited in clinical application by the serious adverse reactions. The long-felt needs in clinical practice, including prolonged half-lives, T cell subset specificity, and toxicity reduction can be achieved by polyethylene glycol (PEG) modification, Fc fusing, or protein mutation of IL-2. NKTR-214, the most advanced IL-2 pathway-targeted agent in clinical development for oncology, shows exciting results in treatment of melanoma in combination with nivolumab. At the same time, many more other modified molecules against cancer and autoimmune diseases are being tested in clinical research, an exciting future lying ahead for IL-2 therapeutics.
Drug Development
;
Humans
;
Immunotherapy/methods*
;
Interleukin-2/therapeutic use*
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Melanoma/drug therapy*
;
Nivolumab/therapeutic use*
;
Polyethylene Glycols
5.Chinese Medicine in Fighting against Covid-19: Role and Inspiration.
Chinese journal of integrative medicine 2021;27(1):3-6
Covid-19 pandemic has caused hundreds of thousands deaths and millions of infections and continued spreading violently. Although researchers are racing to find or develop effective drugs or vaccines, no drugs from modern medical system have been proven effective and the high mutant rates of the virus may lead it resistant to whatever drugs or vaccines developed following modern drug development procedure. Current evidence has demonstrated impressive healing effects of several Chinese medicines (CMs) for Covid-19, which urges us to reflect on the role of CM in the era of modern medicine. Undoubtedly, CM could be promising resources for developing drug candidates for the treatment of Covid-19 in a way similar to the development of artemisinin. But the theory that builds CM, like the emphasis of driving away exogenous pathogen (virus, etc.) by restoring self-healing capacity rather than killing the pathogen directly from the inside and the 'black-box' mode of diagnosing and treating patients, is as important, yet often ignored, an treasure as CM herbs and should be incorporated into modern medicine for future advancement and innovation of medical science.
Antiviral Agents/therapeutic use*
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COVID-19/therapy*
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Disease Outbreaks
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Drug Development/standards*
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Drug Resistance, Viral/genetics*
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Drug Therapy, Combination
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Drugs, Chinese Herbal/therapeutic use*
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Humans
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Medicine, Chinese Traditional/trends*
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Mutation Rate
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Pandemics
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Phytotherapy/methods*
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SARS-CoV-2/physiology*
6.Three-dimensional Culture of Human Airway Epithelium in Matrigel for Evaluation of Human Rhinovirus C and Bocavirus Infections.
Ya Xiong CHEN ; Guang Cheng XIE ; Dong PAN ; Ya Rong DU ; Li Li PANG ; Jing Dong SONG ; Zhao Jun DUAN ; Bu Rong HU
Biomedical and Environmental Sciences 2018;31(2):136-145
OBJECTIVE:
Newly identified human rhinovirus C (HRV-C) and human bocavirus (HBoV) cannot propagate in vitro in traditional cell culture models; thus obtaining knowledge about these viruses and developing related vaccines are difficult. Therefore, it is necessary to develop a novel platform for the propagation of these types of viruses.
METHODS:
A platform for culturing human airway epithelia in a three-dimensional (3D) pattern using Matrigel as scaffold was developed. The features of 3D culture were identified by immunochemical staining and transmission electron microscopy. Nucleic acid levels of HRV-C and HBoV in 3D cells at designated time points were quantitated by real-time polymerase chain reaction (PCR). Levels of cytokines, whose secretion was induced by the viruses, were measured by ELISA.
RESULTS:
Properties of bronchial-like tissues, such as the expression of biomarkers CK5, ZO-1, and PCK, and the development of cilium-like protuberances indicative of the human respiration tract, were observed in 3D-cultured human airway epithelial (HAE) cultures, but not in monolayer-cultured cells. Nucleic acid levels of HRV-C and HBoV and levels of virus-induced cytokines were also measured using the 3D culture system.
CONCLUSION
Our data provide a preliminary indication that the 3D culture model of primary epithelia using a Matrigel scaffold in vitro can be used to propagate HRV-C and HBoV.
Collagen
;
Drug Combinations
;
Enterovirus
;
growth & development
;
isolation & purification
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Enterovirus Infections
;
virology
;
Enzyme-Linked Immunosorbent Assay
;
Epithelial Cells
;
virology
;
Human bocavirus
;
growth & development
;
isolation & purification
;
Humans
;
Laminin
;
Parvoviridae Infections
;
virology
;
Primary Cell Culture
;
methods
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Proteoglycans
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Real-Time Polymerase Chain Reaction
;
Respiratory Mucosa
;
virology
;
Virus Cultivation
7.A protocol for developing a clinical practice guideline for therapeutic drug monitoring of vancomycin.
Zhi-Kang YE ; Ken CHEN ; Yao-Long CHEN ; Suo-di ZHAI
Journal of Huazhong University of Science and Technology (Medical Sciences) 2016;36(3):469-472
This study aimed to develop a guideline for therapeutic drug monitoring (TDM) of vancomycin. We adopted the new guideline definition from the Institute of Medicine (IOM), adhered closely to the six domains of the Appraisal of Guidelines for Research & Evaluation II (AGREE II), and made recommendations based on systematic reviews. We established a Guideline Steering Group and a Guideline Development Group, formulated 12 questions in the form of Population, Intervention, Comparison, Outcome (PICO) and completed a literature search. As far as we know, we will develop the first evidenced-based guideline for vancomycin TDM under the framework of the Grade of Recommendations Assessment, Development and Evaluation (GRADE).
Anti-Bacterial Agents
;
administration & dosage
;
economics
;
pharmacokinetics
;
China
;
Drug Administration Schedule
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Drug Monitoring
;
methods
;
Evidence-Based Medicine
;
Humans
;
Methicillin-Resistant Staphylococcus aureus
;
drug effects
;
growth & development
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pathogenicity
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Staphylococcal Infections
;
drug therapy
;
microbiology
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pathology
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Vancomycin
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administration & dosage
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economics
;
pharmacokinetics
8.ITS2 barcoding DNA region combined with high resolution melting (HRM) analysis of Hyoscyami Semen, the mature seed of Hyoscyamus niger.
Chao XIONG ; Zhi-Gang HU ; Yuan TU ; He-Gang LIU ; Ping WANG ; Ming-Ming ZHAO ; Yu-Hua SHII ; Lan WU ; Wei SUN ; Shi-Lin CHEN
Chinese Journal of Natural Medicines (English Ed.) 2016;14(12):898-903
Hyoscyami Semen, the mature dried seed of Hyoscyamus niger L., has long been used as a traditional Chinese medicine to treat human diseases. Hyoscyami Semen is found in local markets in China. In markets, sellers and buyers commonly inadvertently mix the seeds of H. niger with the seeds of related species such as Hygrophila salicifolia (Vahl) Nees, Astragalus complanatus R. Br., Cuscuta australis R. Br., Cuscuta chinensis Lam., and Impatiens balsamina L. because of their similar morphologies or similar names. Thus, developing a reliable method for discriminating H. niger seeds from its adulterants is necessary to reduce confusion and ensure the safe use of Hyoscyami Semen. The present study was designed to evaluate the efficiency of high-resolution melting analysis combined with DNA barcoding (Bar-HRM) with internal transcribed spacer 2 to discriminate H. niger. Our results show that Bar-HRM successfully identified the adulterants and detected the proportion of H. niger DNA extract within an admixture. In particular, HRM detected H. niger DNA extract in A. complanatus DNA extract at concentrations as low as 1%. In conclusion, the Bar-HRM method developed in the present study for authenticating H. niger is rapid and cost-effective. It can be used in the future to guarantee the purity of Hyoscyami Semen for the clinical use.
China
;
DNA Barcoding, Taxonomic
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methods
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DNA, Intergenic
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chemistry
;
genetics
;
DNA, Plant
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chemistry
;
genetics
;
Discriminant Analysis
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Drug Contamination
;
Drugs, Chinese Herbal
;
chemistry
;
Hyoscyamus
;
genetics
;
growth & development
;
Seeds
;
genetics
;
growth & development
;
Transition Temperature
9.Preliminary study on suitability of ozone sterilization in traditional Chinese medicine and its preparation.
Yan-jun HU ; Ya-qi WANG ; Zhen-feng WU ; Ji-ping LAN ; Li-guo ZHANG ; Ming YANG
China Journal of Chinese Materia Medica 2015;40(16):3137-3141
Microbial contamination, growth and reproduction have a great influence on the quality of traditional Chinese medicine (TCM) and its preparation. TCM may be polluted by microbial in the production process due to ambient air, facilities and appliances and operating personnel, which affects the quality and efficacy of the final product. The GMP certification inspection standard of TCM manufacturing enterprises clearly established: "Sterilization methods of Chinese herbal medicine, intermediate products, finished products should follow the principle whether or not to change its quality", "TCM powder that used as medicine directly should follow the principle whether to do microbiological examinations". So it's particularly important for product quality, corporate energy consumption and its efficiency to choose the scientific and effective sterilization techniques and methods. Ozone is a kind of safe, environmentally friendly, efficient and no residue emerging sterilization technology. It has been widely applied in various fields of medical and health care and production and living. This paper mainly analyzed the ozone sterilization technology of TCM, aiming to explore the principle of ozone sterilization, the advantages, application status and existing problems and so on. The management regulations and implementation rules of ozone sterilization were summarized to make sterilization of Chinese medicine in the production, management, quality control and other aspects standardized, reasonable and scientific, and to provide the theoretical reference of the ozone sterilization technology for TCM and its preparation.
Bacteria
;
drug effects
;
growth & development
;
Drug Contamination
;
prevention & control
;
Drugs, Chinese Herbal
;
chemistry
;
Humans
;
Ozone
;
pharmacology
;
Plants, Medicinal
;
microbiology
;
Sterilization
;
methods
10.Roadmap for elimination of gastric cancer in Korea.
The Korean Journal of Internal Medicine 2015;30(2):133-139
Most gastric cancers are caused by infection with the common human bacterial pathogen, Helicobacter pylori. It is now accepted that gastric cancer can be prevented and virtually eliminated by H. pylori eradication and this knowledge was responsible for country-wide H. pylori eradication combined with secondary cancer prevention for those with residual risk that was introduced in Japan in 2013. Korea is a high H. pylori prevalence and high gastric cancer incidence country and a good candidate for a gastric cancer elimination program. The presence of an H. pylori infection is now considered as an indication for treatment of the infection. However, antimicrobial drug resistance is common among H. pylori in Korea making effective therapy problematic. Country-wide studies of the local and regional antimicrobial resistance patterns are needed to choose the most appropriate therapies. H. pylori and gastric cancer eradication can be both efficient and cost effective making it possible and practical to make Korea H. pylori and gastric cancer free. There is no reason to delay.
Anti-Bacterial Agents/*therapeutic use
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Disease Eradication
;
Drug Resistance, Bacterial
;
Helicobacter Infections/*drug therapy/epidemiology/microbiology
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Helicobacter pylori/*drug effects/growth & development
;
Humans
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Prevalence
;
Primary Prevention/*methods
;
Republic of Korea/epidemiology
;
Risk Assessment
;
Risk Factors
;
Stomach Neoplasms/epidemiology/microbiology/*prevention & control
;
Treatment Outcome

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