1.Predicting Diabetic Retinopathy Using a Machine Learning Approach Informed by Whole-Exome Sequencing Studies.
Chong Yang SHE ; Wen Ying FAN ; Yun Yun LI ; Yong TAO ; Zu Fei LI
Biomedical and Environmental Sciences 2025;38(1):67-78
OBJECTIVE:
To establish and validate a novel diabetic retinopathy (DR) risk-prediction model using a whole-exome sequencing (WES)-based machine learning (ML) method.
METHODS:
WES was performed to identify potential single nucleotide polymorphism (SNP) or mutation sites in a DR pedigree comprising 10 members. A prediction model was established and validated in a cohort of 420 type 2 diabetic patients based on both genetic and demographic features. The contribution of each feature was assessed using Shapley Additive explanation analysis. The efficacies of the models with and without SNP were compared.
RESULTS:
WES revealed that seven SNPs/mutations ( rs116911833 in TRIM7, 1997T>C in LRBA, 1643T>C in PRMT10, rs117858678 in C9orf152, rs201922794 in CLDN25, rs146694895 in SH3GLB2, and rs201407189 in FANCC) were associated with DR. Notably, the model including rs146694895 and rs201407189 achieved better performance in predicting DR (accuracy: 80.2%; sensitivity: 83.3%; specificity: 76.7%; area under the receiver operating characteristic curve [AUC]: 80.0%) than the model without these SNPs (accuracy: 79.4%; sensitivity: 80.3%; specificity: 78.3%; AUC: 79.3%).
CONCLUSION
Novel SNP sites associated with DR were identified in the DR pedigree. Inclusion of rs146694895 and rs201407189 significantly enhanced the performance of the ML-based DR prediction model.
Diabetic Retinopathy/diagnosis*
;
Humans
;
Machine Learning
;
Male
;
Female
;
Polymorphism, Single Nucleotide
;
Middle Aged
;
Exome Sequencing
;
Aged
;
Adult
;
Pedigree
;
Diabetes Mellitus, Type 2/complications*
;
Genetic Predisposition to Disease
;
Mutation
2.An Unusual Case of Bilateral Peripheral Edema in a Male with Undiagnosed Type 2 Diabetes Mellitus
Cho Ok BAEK ; Ki Hoi KIM ; Sun Kyung SONG ; Ji Hye KIM
Journal of Korean Diabetes 2019;20(1):57-61
The present article demonstrates an unusual case of bilateral lower extremity edema caused by neurogenic areflexic bladder as the first physical symptom of diabetes. A 52-year-old man presented to the emergency department because of massive edema of his lower limbs. The edema had been present for 2 weeks, was symmetrical, and was progressively covering the lower limbs up to the inguinal area, scrotal bag, and penis and was accompanied by dysuria and an interrupted urine stream. Laboratory findings revealed a serum glucose level of 657 mg/dL and glycated hemoglobin (HbA1c) level of 15.6%. Computed tomography (CT) of the abdomen and pelvis revealed marked enlargement of the bladder with bilateral hydronephrosis and hydroureter. In addition, CT demonstrated bilateral compression of the iliac veins caused by the enlarged bladder. This case highlights the importance of a broad differential diagnosis for patients with diabetes and extensive peripheral edema. Neurogenic bladder should be considered in the differential diagnosis, even in newly diagnosed diabetic patients.
Abdomen
;
Blood Glucose
;
Diabetes Complications
;
Diabetes Mellitus, Type 2
;
Diagnosis, Differential
;
Dysuria
;
Edema
;
Emergency Service, Hospital
;
Hemoglobin A, Glycosylated
;
Humans
;
Hydronephrosis
;
Iliac Vein
;
Lower Extremity
;
Male
;
Middle Aged
;
Pelvis
;
Penis
;
Rivers
;
Urinary Bladder
;
Urinary Bladder, Neurogenic
3.Effect of Dipeptidyl Peptidase-4 Inhibitors on the Risk of Bone Fractures in a Korean Population
Morena USTULIN ; So Young PARK ; Hangseok CHOI ; Suk CHON ; Jeong Taek WOO ; Sang Youl RHEE
Journal of Korean Medical Science 2019;34(35):e224-
BACKGROUND: There have been equivocal results in studies of the effects of dipeptidyl peptidase-4 inhibitors (DPP-4i) on fractures. In this study, we analyzed the effect of DPP-4i on bone fracture risk in a Korean population. METHODS: We extracted subjects (n = 11,164) aged 50 years or older from the National Health Insurance Service–National Sample Cohort 2.0 from 2009 to 2014. Our control group included subjects without diabetes (n = 5,582), and our treatment groups with diabetes included DPP-4i users (n = 1,410) and DPP-4i non-users (n = 4,172). The primary endpoint was the incidence of a composite outcome consisting of osteoporosis diagnosis, osteoporotic fractures, vertebral fractures, non-vertebral fractures, and femoral fractures. The secondary endpoint was the incidence of each individual component of the composite outcome. Survival analysis was performed with adjustment for age, gender, diabetes complications severity index, Charlson comorbidity index, hypertension medication, and dyslipidemia treatment. RESULTS: The incidence of the composite outcome per 1,000 person-years was 0.089 in DPP-4i users, 0.099 in DPP-4i non-users, and 0.095 in controls. There was no significant difference in fracture risk between DPP-4i users and DPP-4i non-users or controls after the adjustments (P > 0.05). The incidences of osteoporosis diagnosis, osteoporotic fractures, vertebral fractures, non-vertebral fractures, and femoral fractures were not significantly different between DPP-4i users and non-users. The results of subgroup analyses by gender and age were consistent. CONCLUSION: DPP-4i had no significant effect on the risk of fractures in a Korean population.
Cohort Studies
;
Comorbidity
;
Diabetes Complications
;
Diabetes Mellitus, Type 2
;
Diagnosis
;
Dipeptidyl-Peptidase IV Inhibitors
;
Dyslipidemias
;
Femoral Fractures
;
Fractures, Bone
;
Hypertension
;
Incidence
;
National Health Programs
;
Osteoporosis
;
Osteoporotic Fractures
4.Latent Autoimmune Diabetes in Adults: Current Status and New Horizons.
Paolo POZZILLI ; Silvia PIERALICE
Endocrinology and Metabolism 2018;33(2):147-159
Autoimmune diabetes is a heterogeneous disease which can arise at any age. Subjects with adult-onset autoimmune diabetes who do not necessitate insulin-therapy for at least 6 months after diagnosis are demarcated as having latent autoimmune diabetes in adults (LADA). This condition is more heterogeneous than young-onset autoimmune diabetes and shares clinical and metabolic characteristics with both type 2 and type 1 diabetes. Patients with LADA are considered by having highly variable β-cell destruction, different degrees of insulin resistance and heterogeneous titre and pattern of islet autoantibody, suggesting different pathophysiological pathways partially explaining the heterogeneous phenotypes of LADA. To date the heterogeneity of LADA does not allow to establish a priori treatment algorithm and no specific guidelines for LADA therapy are available. These subjects are mostly treated as affected by type 2 diabetes, a factor that might lead to the progression to insulin-dependency quickly. A personalised medicine approach is necessary to attain optimal metabolic control and preserve β-cell function to decrease the risk of long-term diabetes complications. Recent data concerning the use of oral antidiabetic agents as dipeptidyl peptidase 4 inhibitors and glucagon-like peptide 1 receptor agonists indicate up-and-coming results in term of protect C-peptide levels and improving glycaemic control. This review summarises current knowledge on LADA, emphasising controversies regarding its pathophysiology and clinical features. Moreover, we discuss data available about novel therapeutic approaches that can be considered for prevention of β-cell loss in LADA.
Adult*
;
Autoantibodies
;
C-Peptide
;
Diabetes Complications
;
Diabetes Mellitus, Type 1*
;
Diabetes Mellitus, Type 2
;
Diagnosis
;
Dipeptidyl-Peptidase IV Inhibitors
;
Glucagon-Like Peptide 1
;
Humans
;
Hypoglycemic Agents
;
Insulin
;
Insulin Resistance
;
Islets of Langerhans
;
Phenotype
;
Population Characteristics
5.Effect of Vitamin D Status on Von Willebrand Factor and ADAMTS13 in Diabetic Patients on Chronic Hemodialysis.
Keren COHEN-HAGAI ; Gloria RASHID ; Yael EINBINDER ; Meital OHANA ; Sydney BENCHETRIT ; Tali ZITMAN-GAL
Annals of Laboratory Medicine 2017;37(2):155-158
Von Willebrand factor (vWF) is a glycoprotein with a crucial role in the formation of platelet thrombi, and ADAMTS13 is the main enzyme responsible for vWF cleavage. Both are important in the relationship between diabetic nephropathy, hypercoagulability, and cardiovascular disease. This study evaluated a potential relationship between vitamin D (vitD) levels, vWF, ADAMTS13 activity, and inflammation in diabetic patients on chronic hemodialysis (HD). Blood samples from 52 diabetic patients on chronic HD were obtained to determine vitD levels, vWF, and ADAMTS13 activity, and inflammatory markers. HD patients were grouped according to 25-hydroxyvitamin D [25(OH) VitD]<25 nmol/L (n=16) or >25 nmol/L (n=36). vWF antigen and vWF activity were elevated in both groups, with an average of 214.3±82.6% and 175.8±72.6%, respectively. Average ADAMTS13 activity was within the normal range in both groups. Blood samples from the vitD <25 nmol/L group showed a positive correlation between c-reactive protein (CRP) and vWF levels (P=0.023; r=0.564; 95% confidence interval=0.095-0.828), with a negative correlation between HbA1c and 25(OH) VitD (P=0.015; r=-0.337; 95% confidence interval=-0.337-0.19). Diabetic patients on chronic HD had elevated vWF levels and activity with no significant change in ADAMTS13 activity. The correlation between CRP and vWF levels in the 25(OH) VitD<25 nmol/L group suggests inflammatory-related endothelial dysfunction in these patients.
ADAMTS13 Protein/*metabolism
;
Aged
;
C-Reactive Protein/analysis
;
Diabetes Mellitus, Type 2/complications/*diagnosis/metabolism
;
Female
;
Hemoglobin A, Glycosylated/analysis
;
Humans
;
Male
;
Middle Aged
;
Renal Dialysis
;
Renal Insufficiency, Chronic/complications/*diagnosis/metabolism
;
Vitamin D/*analogs & derivatives/blood
;
von Willebrand Factor/*metabolism
6.Identification of Maturity-Onset Diabetes of the Young Caused by Glucokinase Mutations Detected Using Whole-Exome Sequencing.
Eun Hee CHO ; Jae Woong MIN ; Sun Shim CHOI ; Hoon Sung CHOI ; Sang Wook KIM
Endocrinology and Metabolism 2017;32(2):296-301
Glucokinase maturity-onset diabetes of the young (GCK-MODY) represents a distinct subgroup of MODY that does not require hyperglycemia-lowering treatment and has very few diabetes-related complications. Three patients from two families who presented with clinical signs of GCK-MODY were evaluated. Whole-exome sequencing was performed and the effects of the identified mutations were assessed using bioinformatics tools, such as PolyPhen-2, SIFT, and in silico modeling. We identified two mutations: p.Leu30Pro and p.Ser383Leu. In silico analyses predicted that these mutations result in structural conformational changes, protein destabilization, and thermal instability. Our findings may inform future GCK-MODY diagnosis; furthermore, the two mutations detected in two Korean families with GCK-MODY improve our understanding of the genetic basis of the disease.
Computational Biology
;
Computer Simulation
;
Diabetes Complications
;
Diabetes Mellitus, Type 2*
;
Diagnosis
;
Glucokinase*
;
Humans
7.Testosterone supplementary therapy for type-2 diabetes mellitus males with hypogonadism: Controversy and analysis.
Zhen CHENG ; Lu-Yao ZHANG ; Guan-Ming CHEN ; Wei HE ; Ke CAI ; Zhi-Hong LIAO
National Journal of Andrology 2017;23(8):739-744
As more and more studies suggest that type 2 diabetes mellitus (T2DM) is closely related to male hypogonadism, people begin to pay more attention to the role of testosterone in the development of T2DM and the effect and safety of testosterone supplementary therapy. There is some controversy in randomized controlled studies and meta-analyses about the effects of testosterone supplementation on the blood glucose level, androgen deficiency symptoms, and cardiovascular diseases. This review focuses on the diagnosis of hypogonadism in T2DM males, differences in the therapeutic effects and safety of testosterone replacement among different studies, and rational use of testosterone supplementation for T2DM patients.
Androgens
;
deficiency
;
Blood Glucose
;
Cardiovascular Diseases
;
etiology
;
Diabetes Mellitus, Type 2
;
etiology
;
Hormone Replacement Therapy
;
Humans
;
Hypogonadism
;
complications
;
diagnosis
;
drug therapy
;
Male
;
Meta-Analysis as Topic
;
Randomized Controlled Trials as Topic
;
Testosterone
;
physiology
;
therapeutic use
8.Diagnostic Utility of Serum Glycated Albumin for Diabetes Mellitus and Its Correlation With Hyperlipidemia.
Sholhui PARK ; Wookeun LEE ; Hae Sun CHUNG ; Ki Sook HONG
Annals of Laboratory Medicine 2016;36(4):306-312
BACKGROUND: Glycated albumin (GA) is a better marker of short-term glycemic control than glycated hemoglobin (A1c). Dyslipidemia is the main cause of cardiovascular complications in diabetes mellitus (DM). Studies on the correlation of GA with lipid indices are sparse. We investigated the diagnostic utility of GA for DM and its relationship with serum lipid profiles compared with that of A1c. METHODS: The GA enzymatic method was used to determine the diagnostic utility of GA for DM by using samples from 163 normal subjects (group 1) and 102 patients newly diagnosed with type 2 DM (T2DM; group 2). To analyze the lipid profiles, 263 patients with T2DM receiving treatment (group 3) were recruited. RESULTS: GA correlated with A1c (r=0.934, P<0.0001). Linear regression analysis indicated that GA levels were about 2.48 folds those of A1c. In the ROC analysis for GA to diagnose DM, the areas under the curve (0.988, 95% confidence interval 0.972-1.004) was excellent. HDL levels were significantly lower in groups 2 and 3. In group 1, positive correlations were observed between A1c and triglyceride (TG), total cholesterol (TC), LDL, TG/HDL, TC/HDL, and LDL/HDL levels. A negative correlation was observed between HDL and A1c levels. In group 3, HDL levels (P=0.0124 and P=0.0141, respectively) were significantly higher and LDL levels tended to be lower, not statistically significant, in the well-controlled group categorized using the A1c and GA cut-off values. CONCLUSIONS: GA is a potential diagnostic tool for DM. Compared with A1c, GA seems less relevant to dyslipidemia.
Adult
;
Area Under Curve
;
Blood Glucose/analysis
;
Cholesterol, HDL/blood
;
Cholesterol, LDL/blood
;
Chromatography, High Pressure Liquid
;
Diabetes Mellitus, Type 2/complications/*diagnosis/drug therapy
;
Female
;
Humans
;
Hyperlipidemias/complications/*diagnosis
;
Hypoglycemic Agents/therapeutic use
;
Linear Models
;
Lipids/blood
;
Male
;
Middle Aged
;
ROC Curve
;
Serum Albumin/*analysis
9.The Effect of Sleep Quality on the Development of Type 2 Diabetes in Primary Care Patients.
Jung Ah LEE ; Sung SUNWOO ; Young Sik KIM ; Byung Yeon YU ; Hoon Ki PARK ; Tae Hee JEON ; Byung Wook YOO
Journal of Korean Medical Science 2016;31(2):240-246
Sleep has important effects on physical and mental health, and sleep disorders are associated with increased mortality and morbidity. This study was conducted to evaluate the relationship between sleep duration or sleep quality and the risk of type 2 diabetes. The FACTS (FAmily CohorT Study in primary care) was established to investigate the relations between familial environment and health which was conducted at 22 family medicine outpatient clinics in general hospitals. Total 563 patients without diabetes who received > or =1 year follow-up examination were included in the analysis. We used the Pittsburgh Sleep Quality Index to determine sleep quality, and a score of > or =5 was considered to define poor sleep quality. Patients taking oral hypoglycemic agents, having a fasting glucose level of >126 mg/dL, or diagnosed with diabetes by physicians were classified as having diabetes. The median follow-up period was 2.5 years. Poor sleep quality was associated with a higher risk of diabetes after adjusting for age, sex, body mass index, income, physical activity, and family history of diabetes (relative risk=2.64; 95% confidence interval, 1.03-6.78). As a risk factor for the development of diabetes, poor sleep quality may independently increase the incidence of diabetes.
Aged
;
Blood Glucose/analysis
;
Body Mass Index
;
Cohort Studies
;
Demography
;
Diabetes Mellitus, Type 2/complications/*diagnosis/drug therapy
;
Female
;
Follow-Up Studies
;
Humans
;
Hypoglycemic Agents/therapeutic use
;
Male
;
Middle Aged
;
Obesity/complications
;
Primary Health Care
;
Risk Factors
;
*Sleep
;
Surveys and Questionnaires
10.Improving Effect of the Acute Administration of Dietary Fiber-Enriched Cereals on Blood Glucose Levels and Gut Hormone Secretion.
Eun Ky KIM ; Tae Jung OH ; Lee Kyung KIM ; Young Min CHO
Journal of Korean Medical Science 2016;31(2):222-230
Dietary fiber improves hyperglycemia in patients with type 2 diabetes through its physicochemical properties and possible modulation of gut hormone secretion, such as glucagon-like peptide 1 (GLP-1). We assessed the effect of dietary fiber-enriched cereal flakes (DC) on postprandial hyperglycemia and gut hormone secretion in patients with type 2 diabetes. Thirteen participants ate isocaloric meals based on either DC or conventional cereal flakes (CC) in a crossover design. DC or CC was provided for dinner, night snack on day 1 and breakfast on day 2, followed by a high-fat lunch. On day 2, the levels of plasma glucose, GLP-1, glucose-dependent insulinotropic polypeptide (GIP), and insulin were measured. Compared to CC, DC intake exhibited a lower post-breakfast 2-hours glucose level (198.5±12.8 vs. 245.9±15.2 mg/dL, P<0.05) and a lower incremental peak of glucose from baseline (101.8±9.1 vs. 140.3±14.3 mg/dL, P<0.001). The incremental area under the curve (iAUC) of glucose after breakfast was lower with DC than with CC (P<0.001). However, there were no differences in the plasma insulin, glucagon, GLP-1, and GIP levels. In conclusion, acute administration of DC attenuates postprandial hyperglycemia without any significant change in the representative glucose-regulating hormones in patients with type 2 diabetes (ClinicalTrials.gov. NCT 01997281).
Adult
;
Aged
;
Area Under Curve
;
Blood Glucose/*analysis
;
Cross-Over Studies
;
Diabetes Mellitus, Type 2/complications/diagnosis/*diet therapy
;
Dietary Fiber/*therapeutic use
;
Female
;
Gastric Inhibitory Polypeptide/blood
;
Glucagon/blood
;
Glucagon-Like Peptide 1/*blood
;
Hemoglobin A, Glycosylated/analysis
;
Humans
;
Hyperglycemia/complications/diagnosis
;
Insulin/blood
;
Intestines/metabolism
;
Male
;
Middle Aged
;
ROC Curve

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