1.Bioinformatics-Based Analysis of the Roles of MX1,IFI44,and STAT1 in Lupus Nephritis
Daolin CUI ; Chunli CHEN ; Zhenghong ZHOU ; Lei GONG
Journal of Kunming Medical University 2024;45(12):105-114
Objective To identify potential biomarkers associated with LN,with the goal of improving early diagnosis,disease monitoring,and the development of more precise treatment strategies.Methods Gene expression data were downloaded from the Gene Expression Omnibus(GEO)database for datasets GSE22221,GSE112943,GSE99967,and GSE32591.Intersecting genes were obtained through the application of weighted gene co-expression network analysis(WGCNA)and linear models for microarray data(LIMMA).Subsequently,biological function and pathway analyses were conducted on these intersecting genes using Gene Ontology(GO)and the Kyoto Encyclopedia of Genes and Genomes(KEGG).Next,protein-protein interaction(PPI)network analysis was performed,and hub genes highly associated with LN were identified using the CytoHubba algorithm,support vector machine(SVM),and random forest(RF)methods.Receiver operating characteristic(ROC)analysis was performed,and three potential biomarkers were validated using the GSE72798 dataset.Results The green-yellow module(P=7.4e-40)and the cyan module(P=1.5e-14)were identified through WGCNA analysis.A total of 193 differentially expressed genes were identified using LIMMA,with 113 intersecting genes related to LN being identified.GO and KEGG analyses indicated that these genes were mainly enriched in viral or bacterial defense,type I interferon signaling pathway,neutrophil-mediated immunity,and Toll-like receptor signaling.MX1,IFI44,and STAT1 were identified as hub genes using CytoHubba,SVM,and RF methods,with AUC values of 0.874,0.879,and 0.833,respectively.Validation using the GSE72798 dataset demonstrated that the expression of MX1,IFI44,and STAT1 was significantly higher in LN patients compared to healthy individuals(P<0.001 for all).Conclusion MX1,IFI44,and STAT1 play crucial roles in the pathogenesis of LN and may serve as important biomarkers and potential therapeutic targets for LN.
2.Research progress on regulatory function of HOXD?AS1 in tumors
Jinglin LI ; Kaiming LENG ; Yi XU ; Daolin JI ; Zhenglong LI ; Xingming JIANG ; Yunfu CUI
Clinical Medicine of China 2018;34(1):79-82
HOXD-AS1 is a recently discovered pivotal cancer-related long non-coding RNA(lncRNA) .Abnormal expression of HOXD-AS1 exhibits a regulatory role in the occurrence and development of tumors,and is expected to become a new tumor marker.Clarifying the mechanism of HOXD-AS1 will provide a feasible theoretical basis and potential intervention targets for the diagnosis and treatment of tumors.This article reviews the current research status of HOXD-AS1 in tumors.
3.Research progress in regulatory mechanism of CCAT2 and the relationship with digestive system neoplasm
Jinglin LI ; Zhenglong LI ; Lining HUANG ; Kaiming LENG ; Daolin JI ; Yi XU ; Xingming JIANG ; Yunfu CUI
Journal of Chinese Physician 2018;20(5):790-793
Colon cancer associated transcript 2 (CCAT2) is found recently an important member of cancer-related long non-coding RNA (lncRNA).Dysregulation of CCAT2 plays a pivotal role in tumor pathophysiological processes,especially in tumourigenesis and progression of digestive system neoplasms,thus,CCAT2 likely represents a novel cancer biomarker or therapeutic target.Elucidation of the molecular mechanisms of CCAT2 will provide a feasible theoretical basis and potential interventional target for the diagnosis and treatment of malignancies.The present review summarizes current evidences of CCAT2 in digestive system neoplasms.

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