1.A Comparative Analysis of Subtyping Methodologies on Cross-sectional sMRI Data.
Shirui ZHANG ; Baitong ZHANG ; Kun ZHAO ; Zhuangzhuang LI ; Pan WANG ; Dawei WANG ; Chengyuan SONG ; Jie LU ; Zengqiang ZHANG ; Hongxiang YAO ; Tong HAN ; Chunshui YU ; Bo ZHOU ; Ying HAN ; Xi ZHANG ; Pindong CHEN ; Yong LIU
Neuroscience Bulletin 2025;41(9):1689-1695
2.KG-CNNDTI: a knowledge graph-enhanced prediction model for drug-target interactions and application in virtual screening of natural products against Alzheimer's disease.
Chengyuan YUE ; Baiyu CHEN ; Long CHEN ; Le XIONG ; Changda GONG ; Ze WANG ; Guixia LIU ; Weihua LI ; Rui WANG ; Yun TANG
Chinese Journal of Natural Medicines (English Ed.) 2025;23(11):1283-1292
Accurate prediction of drug-target interactions (DTIs) plays a pivotal role in drug discovery, facilitating optimization of lead compounds, drug repurposing and elucidation of drug side effects. However, traditional DTI prediction methods are often limited by incomplete biological data and insufficient representation of protein features. In this study, we proposed KG-CNNDTI, a novel knowledge graph-enhanced framework for DTI prediction, which integrates heterogeneous biological information to improve model generalizability and predictive performance. The proposed model utilized protein embeddings derived from a biomedical knowledge graph via the Node2Vec algorithm, which were further enriched with contextualized sequence representations obtained from ProteinBERT. For compound representation, multiple molecular fingerprint schemes alongside the Uni-Mol pre-trained model were evaluated. The fused representations served as inputs to both classical machine learning models and a convolutional neural network-based predictor. Experimental evaluations across benchmark datasets demonstrated that KG-CNNDTI achieved superior performance compared to state-of-the-art methods, particularly in terms of Precision, Recall, F1-Score and area under the precision-recall curve (AUPR). Ablation analysis highlighted the substantial contribution of knowledge graph-derived features. Moreover, KG-CNNDTI was employed for virtual screening of natural products against Alzheimer's disease, resulting in 40 candidate compounds. 5 were supported by literature evidence, among which 3 were further validated in vitro assays.
Alzheimer Disease/drug therapy*
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Biological Products/therapeutic use*
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Humans
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Neural Networks, Computer
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Machine Learning
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Drug Discovery/methods*
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Algorithms
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Drug Evaluation, Preclinical/methods*
3.Epidemiology and Clinical Characteristics of Kala-azar in Kashgar Region from 2013 to 2023
Jiaoling LI ; MOMING ZULIPIYA ; TUERXUN MAIMAITIAILI ; Jie GAO ; Chengyuan LIU ; Yutian CHONG ; Jianyun ZHU
Journal of Sun Yat-sen University(Medical Sciences) 2025;46(4):708-713
[Objective]To explore the epidemiology and clinical characteristics of kala-azar patients in Kashgar region,so as to improve the diagnosis and treatment.[Methods]A retrospective analysis was conducted on the clinical data of 71 kala-azar patients admitted to the First People's Hospital of Kashgar Region between January 2013 and December 2023.[Results]Among the 71 patients,the majority were aged 0-5 years(52.11%,37/71),with a male-to-female ratio of 0.92:1.Most cases occurred in winter and spring.Common clinical manifestations included fever,fatigue,decreased appetite,splenomegaly and hepatomegaly.Laboratory investigations mainly found pancytopenia,reversed albumin-to-globulin ratio,elevated transaminases,and increased C-reactive protein and procalcitonin.The positive rates of anti-rK39 antibody detection and bone marrow microscopy were 100%(23/23)and 91.38%(53/58),respectively.Metagenomics next-generation sequencing(mNGS)of liver tissue identified Leishmania donovani in one case.The common complications were infectious toxic hepatitis 49.30%(35/71),myocarditis 29.56%(21/71),and bronchopneumonia 23.94%(17/71).[Conclusions]Potential kala-azar should be taken into consideration for patients from the endemic areas with long-term irregular fever accompanied by splenomegaly,hemocytopenia,and reversed albumin-to-globulin ratio.Bone marrow smear microscopy and anti-rK39 antibody detection are recommended for the diagnosis,and mNGS provides a novel diagnostic solution.
4.Differential effects of kartogenin on chondrogenic and osteogenic differentiation of rat and rabbit bone marrow mesenchymal stem cells
Chinese Journal of Tissue Engineering Research 2025;29(35):7490-7498
BACKGROUND:Bone marrow mesenchymal stem cells possess multipotent differentiation potential and are an important source of cells for cartilage and bone tissue regeneration research.Kartogenin is a small-molecule drug that has been demonstrated to promote stem cell differentiation towards chondrogenesis.However,the ability to promote osteogenic differentiation is still controversial,and the specific effects of kartogenin on the chondrogenic and osteogenic differentiation of stem cells of different species have not been fully elucidated.OBJECTIVE:To investigate the effects of kartogenin on chondrogenic and osteogenic differentiation in rabbit-derived and rat-derived bone marrow mesenchymal stem cells.METHODS:Rabbit-derived and rat-derived bone marrow mesenchymal stem cells were obtained through whole bone marrow separation and adherence methods,and were treated with varying concentrations of kartogenin.Cell proliferation was detected using the CCK-8 assay.Chondrogenic and osteogenic differentiation was assessed via toluidine blue and alizarin red staining,respectively.After screening for the optimal concentration of kartogenin,alkaline phosphatase staining,qRT-PCR,and western blot assay were employed to analyze the expression of osteogenic and chondrogenic-related genes and proteins.RESULTS AND CONCLUSION:(1)Within the concentration range of 0 to 10 000 nmol/L,kartogenin did not significantly affect the proliferation of rabbit-derived or mouse-derived bone marrow mesenchymal stem cells.(2)The differentiation effect of kartogenin on rabbit-derived and rat-derived bone marrow mesenchymal stem cells showed significant differences.In rabbit-derived bone marrow mesenchymal stem cells,kartogenin predominantly promoted chondrogenic differentiation while inhibiting osteogenic differentiation.This was evident from positive toluidine blue staining,whereas alkaline phosphatase and alizarin red staining exhibited no significant changes.qRT-PCR analysis revealed upregulation of chondrogenic-related genes(Col2a1 and Sox9)and downregulation of genes associated with osteogenesis(Alpl,Col1a1,Runx2,and Bglap).Similar results were found in the western blot assay.(3)In contrast,kartogenin in mouse-derived bone marrow mesenchymal stem cells promoted both chondrogenic and osteogenic differentiation.While toluidine blue staining remained largely unchanged,alkaline phosphatase and alizarin red staining revealed increased positivity,indicative of enhanced osteogenesis.qRT-PCR analysis showed upregulation of not only chondrogenic-related genes(Col2a1 and Sox9)but also genes linked to osteogenesis(Alpl,Col1a1,Runx2,and Bglap).The western blot assay results showed similar results.These findings suggest that kartogenin exerts differential regulatory effects on the differentiation of rabbit and rat bone marrow mesenchymal stem cells,potentially stemming from variations in gene expression profiles and underlying signaling pathways.
5.Differential effects of kartogenin on chondrogenic and osteogenic differentiation of rat and rabbit bone marrow mesenchymal stem cells
Chinese Journal of Tissue Engineering Research 2025;29(35):7490-7498
BACKGROUND:Bone marrow mesenchymal stem cells possess multipotent differentiation potential and are an important source of cells for cartilage and bone tissue regeneration research.Kartogenin is a small-molecule drug that has been demonstrated to promote stem cell differentiation towards chondrogenesis.However,the ability to promote osteogenic differentiation is still controversial,and the specific effects of kartogenin on the chondrogenic and osteogenic differentiation of stem cells of different species have not been fully elucidated.OBJECTIVE:To investigate the effects of kartogenin on chondrogenic and osteogenic differentiation in rabbit-derived and rat-derived bone marrow mesenchymal stem cells.METHODS:Rabbit-derived and rat-derived bone marrow mesenchymal stem cells were obtained through whole bone marrow separation and adherence methods,and were treated with varying concentrations of kartogenin.Cell proliferation was detected using the CCK-8 assay.Chondrogenic and osteogenic differentiation was assessed via toluidine blue and alizarin red staining,respectively.After screening for the optimal concentration of kartogenin,alkaline phosphatase staining,qRT-PCR,and western blot assay were employed to analyze the expression of osteogenic and chondrogenic-related genes and proteins.RESULTS AND CONCLUSION:(1)Within the concentration range of 0 to 10 000 nmol/L,kartogenin did not significantly affect the proliferation of rabbit-derived or mouse-derived bone marrow mesenchymal stem cells.(2)The differentiation effect of kartogenin on rabbit-derived and rat-derived bone marrow mesenchymal stem cells showed significant differences.In rabbit-derived bone marrow mesenchymal stem cells,kartogenin predominantly promoted chondrogenic differentiation while inhibiting osteogenic differentiation.This was evident from positive toluidine blue staining,whereas alkaline phosphatase and alizarin red staining exhibited no significant changes.qRT-PCR analysis revealed upregulation of chondrogenic-related genes(Col2a1 and Sox9)and downregulation of genes associated with osteogenesis(Alpl,Col1a1,Runx2,and Bglap).Similar results were found in the western blot assay.(3)In contrast,kartogenin in mouse-derived bone marrow mesenchymal stem cells promoted both chondrogenic and osteogenic differentiation.While toluidine blue staining remained largely unchanged,alkaline phosphatase and alizarin red staining revealed increased positivity,indicative of enhanced osteogenesis.qRT-PCR analysis showed upregulation of not only chondrogenic-related genes(Col2a1 and Sox9)but also genes linked to osteogenesis(Alpl,Col1a1,Runx2,and Bglap).The western blot assay results showed similar results.These findings suggest that kartogenin exerts differential regulatory effects on the differentiation of rabbit and rat bone marrow mesenchymal stem cells,potentially stemming from variations in gene expression profiles and underlying signaling pathways.
6.Epidemiology and Clinical Characteristics of Kala-azar in Kashgar Region from 2013 to 2023
Jiaoling LI ; MOMING ZULIPIYA ; TUERXUN MAIMAITIAILI ; Jie GAO ; Chengyuan LIU ; Yutian CHONG ; Jianyun ZHU
Journal of Sun Yat-sen University(Medical Sciences) 2025;46(4):708-713
[Objective]To explore the epidemiology and clinical characteristics of kala-azar patients in Kashgar region,so as to improve the diagnosis and treatment.[Methods]A retrospective analysis was conducted on the clinical data of 71 kala-azar patients admitted to the First People's Hospital of Kashgar Region between January 2013 and December 2023.[Results]Among the 71 patients,the majority were aged 0-5 years(52.11%,37/71),with a male-to-female ratio of 0.92:1.Most cases occurred in winter and spring.Common clinical manifestations included fever,fatigue,decreased appetite,splenomegaly and hepatomegaly.Laboratory investigations mainly found pancytopenia,reversed albumin-to-globulin ratio,elevated transaminases,and increased C-reactive protein and procalcitonin.The positive rates of anti-rK39 antibody detection and bone marrow microscopy were 100%(23/23)and 91.38%(53/58),respectively.Metagenomics next-generation sequencing(mNGS)of liver tissue identified Leishmania donovani in one case.The common complications were infectious toxic hepatitis 49.30%(35/71),myocarditis 29.56%(21/71),and bronchopneumonia 23.94%(17/71).[Conclusions]Potential kala-azar should be taken into consideration for patients from the endemic areas with long-term irregular fever accompanied by splenomegaly,hemocytopenia,and reversed albumin-to-globulin ratio.Bone marrow smear microscopy and anti-rK39 antibody detection are recommended for the diagnosis,and mNGS provides a novel diagnostic solution.
7.Geographic variation in secondary metabolites contents and their relationship with soil mineral elements in Pleuropterus multiflorum Thunb. from different regions
Yaling YANG ; Siman WANG ; Ruibin BAI ; Feng XIONG ; Yan JIN ; Hanwei LIU ; Ziyi WANG ; Chengyuan YANG ; Yi YU ; Apu CHOWDHURY ; Chuanzhi KANG ; Jian YANG ; Lanping GUO
Science of Traditional Chinese Medicine 2024;2(3):214-223
Background: Pleuropterus multiflorum Thunb. cv. “Heshouwu”(HSW) has been used as a classical material for both medicine and food in China for millennia. Recently, the cultivation region of HSW has shifted from Guangdong to Sichuan, Guizhou, and other regions. The investigation of geographic variation in bioactive metabolite contents and their relationship with soil mineral elements holds academic significance. Objective: This study aimed to investigate the variations in the distribution of active components in HSW across diverse planting regions and their relationship with soil mineral elements. Methods: A reliable quantitative analysis based on ultrahigh-performance liquid chromatography with triple-quadrupole mass spectrometry (UPLC-QQQ-MS) was developed to assess the levels of 15 bioactive metabolites in 60 HSW samples collected from 4 distinct regions. A total of 43 soil mineral elements in corresponding 60 soil samples were quantified by inductively coupled plasma mass spectrometry (ICP-MS). Orthogonal partial least squares-discriminant analysis (OPLS-DA), heatmap analysis, Pearson correlation analysis, and random forest (RF) regression were conducted based on the above quantitative data. Results: The content of stilbene glycosides displayed a wider range of variation compared with emodin and physcion among different regions. Eight compounds were screened as the differential metabolites in HSW samples from various sources using the supervised OPLS-DA analysis. Among these, 2 important functional compounds including physcion and 2, 3, 5, 4′-tetrahydroxystilbene-2-O-(6″-O-ace-tyl)-glucoside (THSG-5) are the most abundant in HSW samples from Deqing, a geographical indicative production region. Pearson correlation analysis indicated that the impact of soil mineral elements on the levels of stilbene glycosides is greater compared to that on anthraquinones. A negative correlation was observed between the levels of elements Na, Zn, Ba, Ti, and 2, 3, 5, 4′-tetrahydroxysilbene 2-O-glucoside (THSG-1). Conversely, a positive correlation was found between the contents of elements Na, Ce, Ti, and physcion and THSG-5, 2 components that exhibited higher levels in Deqing. Furthermore, an RF algorithm was employed to establish an interrelationship model, effectively forecasting the abundance of the majority of differential metabolites in HSW samples based on the content data of soil mineral elements. Conclusions: The variation of stilbene glycosides is wider than emodin and physcion in HSW. The levels of metabolites in HSW samples are influenced by soil mineral elements, with stilbene glycosides being more susceptible to such influences compared to anthraquinones. Specifically, THSG-1 shows a negative association withmost soil mineral elements, notably Na, Zn, Ba, and Ti, whereas the content of physcion displays a positive correlation.
8.A practical study on creating service-oriented party branches in functional departments through"branch co-construction"by the party branch of the affiliated hospital
Qing LIU ; Youyou MAO ; Liuyan FENG ; Chengyuan FANG
Modern Hospital 2024;24(9):1347-1349
Promoting the integration of party building with business work is a strong political guarantee for the high-quali-ty development of public hospitals in the new era."Party Branch Co-construction at Primary Level"is a vehicle for integrating Party building efforts with the main service tasks and supporting central work activities.This project focuses on the hospital's high-quality development with a goal-oriented and problem-oriented approach,aiming to create"service-oriented"Party branches within functional departments.Through the"Branch Co-construction"activities,it explores:1.Joint organization of activities;2.Business coordination;3.Joint team development.The project aims to integrate the regular organization activities of functional department Party branches with clinical business work,enhancing the awareness of proactive and front-line service in functional departments.It continuously explores ways and methods for"co-construction and joint work"with clinical medical and technical department Party branches,leveraging the exemplary role of Party members and the fighting bastion role of Party branches.
9.Comparison of the efficacy of 0.05% cyclosporine A and 0.1% fluorometholone eye drops in the treatment of moderate and severe dry eyes
Huijuan GAO ; Chengyuan ZHANG ; Xia ZHANG ; Lu ZHAO ; Lin LIU ; Qing HE ; Caiyuan XIE ; Ziqi MENG ; Long SU ; Ruihua WEI
Chinese Journal of Experimental Ophthalmology 2024;42(11):1012-1019
Objective:To compare the therapeutic effects of 0.05% cyclosporine and 0.1% fluorometholone eye drops in patients with moderate and severe dry eye.Methods:A randomized controlled study was conducted.Fifty-two patients (52 eyes) with moderate to severe dry eye in Tianjin Medical University Eye Hospital from August 2021 to December 2022 were enrolled and randomly divided into 0.05% cyclosporine group and 0.1% fluorometholone group by random number table method, with 26 cases (26 eyes) in each group.Patients received 0.05% cyclosporine eye drops (2 times/day) and 0.1% fluorometholone eye drops (2 times/day) combined with calf blood deproteinized extract eye drops (4 times/day) according to the grouping.Before and 1, 3 and 6 months after treatment, clinical symptoms and signs were observed and Ocular Surface Disease Index (OSDI) score, corneal fluorescein staining (CFS) score, Schirmer Ⅰ test (SⅠT), non-invasive first tear film break-up time (NIBUTf), and conjunctival goblet cell (CGC) density were recorded.Before treatment and after 6 months of treatment, changes in corneal nerves and dendritic cells (DC) were observed by in vivo confocal microscopy (IVCM).This study adhered to the Declaration of Helsinki and was approved by the Medical Ethics Committee of Eye Hospital of Tianjin Medical University (No.2021KY-17).Written informed consent was obtained from each subject. Results:Compared with the 0.1% fluorometholone group, CFS score decreased after 1 month of treatment, but SⅠT, NIBUTf and CFS score increased after 3 months of treatment, and OSDI score, SⅠT and CFS score decreased after 6 months of treatment in the 0.05% cyclosporine group, showing statistically significant differences (all at P<0.05).Compared with baseline, in the 0.05% cyclosporine group, NIBUTf increased and CFS score decreased after 1 month of treatment, OSDI score and CFS score decreased, SⅠT and NIBUTf increased after 3 and 6 months of treatment, showing statistically significant differences (all at P<0.05).In the 0.1% fluorometholone group, CFS score decreased after 3 months of treatment, OSDI score and CFS score decreased, SⅠT increased after 6 months of treatment compared to baseline, showing statistically significant differences (all at P<0.05).OSDI score and CFS score decreased, SⅠT increased after 6 months of treatment compared to 3 months of treatment in the 0.05% cyclosporine group, and the differences were statistically significant (all at P<0.05).Baseline and CGC densities after 1, 3 and 6 months of treatment were (147.66±17.29), (195.44±15.46), (210.36±19.15) and (282.09±22.63)cells/mm 2 in the 0.05% cyclosporine group and (138.09±17.29), (95.67±15.46), (117.77±19.15) and (109.13±22.63)cells/mm 2 in the 0.1% fluorometholone group, respectively, with a statistically significant overall difference ( Fgroup=11.724, P<0.001; Ftime=4.837, P=0.005).Compared with the 0.1% fluorometholone group, CGC density in the 0.05% cyclosporine group increased after 1, 3 and 6 months of treatment, with statistically significant differences (all at P<0.05).Compared with baseline, the CGC density increased in the 0.05% cyclosporine group after 1, 3 and 6 months of treatment, and the differences were statistically significant (all at P<0.05).Compared with the 0.1% fluorometholone group, the corneal nerve fiber density in the 0.05% cyclosporine group increased after 6 months of treatment, and corneal DC density, area and dendrite number decreased, showing statistically significant differences (all at P<0.05). Conclusions:Cyclosporine 0.05% eye drops combined with calf blood deproteinized extract eye drops can improve symptoms and signs in patients with moderate to severe dry eye, and the long-term effect is better than that of 0.1% fluorometholone plus calf blood deproteinized extract eye drops.
10.Assessment of different bone marrow infiltration patterns with MR whole-body diffusion weighted imaging in multiple myeloma
Yawen WU ; Dongmei WANG ; Hongwei CAO ; Fengzhen CUI ; Chengyuan XU ; Jie LIU ; Chengyu JIN ; Boyi LI ; Yuqing LI
Journal of Practical Radiology 2024;40(6):952-956
Objective To evaluate the apparent diffusion coefficient(ADC)values of different bone marrow infiltration patterns in multiple myeloma(MM)patients with MR whole-body diffusion weighted imaging(WB-DWI)and to determine the ADC thresholds for different bone marrow infiltration patterns.Methods Nineteen MM patients diagnosed for the first time were selected.The lesions types of each site(cervical spine,ribs,sternum,humerus,scapula,sacral spine,ilium,femur,thoracic spine,and lumbar spine)after the WB-DWI images were visually evaluated,which were divided into focal group(including focal lesion in combined focal and diffuse infiltration)[region of interest(ROI)=141],pure diffuse infiltration group(ROI=150),diffuse lesion in combined focal and diffuse infiltration group(ROI=127),"salt-and-pepper"group(ROI=54),and normal appearance group(ROI=68).ADC values were measured and compared between each group and the receiver operating characteristic(ROC)curve was drawn to distinguish different patterns of bone marrow infiltration.Results There was no statistically significant difference in ADC values between the diffuse lesion in combined focal and diffuse infiltration group and the"salt-and-pepper"group(P>0.99),and there was statistically significant difference in ADC values between the other groups(P<0.05).The ROC curve showed that the area under the curve(AUC)for identifying focal group and the"salt-and-pepper"group was 0.889[95%confidence interval(CI)0.844-0.934],the AUC for identifying pure diffuse infiltration group and the normal appearance group was 0.968(95%CI 0.949-0.987).ADC values were able to accurately and visually differentiate between the different patterns of bone marrow infiltration.Conclusion The ADC values can be used as a quantitative tool to objectively distinguish different bone marrow infiltration patterns in MM patients.

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