1.Research progress of phase separation of intracellular biological macromolecules.
Hui LI ; Qingxi LIU ; Xinjun LI ; Qiang JIAO ; Wenjian MA
Chinese Journal of Biotechnology 2020;36(7):1261-1268
The phenomenon of phase separation of intracellular biological macromolecules is an emerging research field that has received great attention in recent years. As an aggregation and compartment mechanism of cell biochemical reactions, it widely exists in nature and participates in important physiological processes such as gene transcription and regulation, as well as influences organism's response to external stimuli. Disequilibrium of phase separation may lead to the occurrence of some major diseases. Researchers in cross-cutting fields are trying to examine dementia and other related diseases from a new perspective of phase separation, exploring its molecular mechanism and the potential possibility of intervention and treatment. This review intends to introduce the latest research progress in this field, summarize the major research directions, biochemical basis, its relationship with disease occurrence, and giving a future perspective of key problems to focus on.
Animals
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Chemistry Techniques, Analytical
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trends
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Cytoplasm
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chemistry
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metabolism
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Humans
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Macromolecular Substances
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isolation & purification
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Research
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trends
2.Determination of sulfur compounds in biological desulfurization system by high performance liquid chromatography.
Zheng CHEN ; Maohua YANG ; Tingzhen MU ; Delu MIAO ; Xuhao ZHAO ; Jian ZHANG ; Jianmin XING
Chinese Journal of Biotechnology 2020;36(10):2181-2192
Biological desulfurization is a process in which sulfur compounds are removed from gas and oil using microorganisms. It is a simple process that has mild operating conditions, high desulfurization efficiency, low energy consumption and less environmental pollution. However, there is still a lack of simple and efficient analytical methods for quantitatively analyzing the sulfur compounds in the biological desulfurization process. In order to solve this problem, the analytical method for the simultaneous determination of sulfite, thiosulfate and sulfide in biological desulfurization solutions by pre-column fluorescence derivation using high performance liquid chromatography (HPLC) was developed. The standard curves of sulfur species in this analytical method had good linear relationships with correlation coefficients of 0.999 5, 0.999 7, and 0.999 7 for sulfite, thiosulfate and sulfide, respectively. The detection limits of these sulfur compounds were 0.000 6, 0.000 7 and 0.001 1 μmol/L; the range of recovery rates were 98.17 to 101.9%, 100.9 to 102.6%, and 101.1 to 104.2%; which had good repeatability and stability. The analytical method was simple, efficient and accurate, and could be used to simultaneously determine the sulfur compounds in different biological desulfurization systems.
Chemistry Techniques, Analytical/methods*
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Chromatography, High Pressure Liquid
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Sulfur Compounds/analysis*
3.Romipeptides A and B, two new romidepsin derivatives isolated from Chromobacterium violaceum No.968 and their antitumor activities in vitro.
Lei XIONG ; Chang-Fa CHEN ; Tao-Ling MIN ; Hai-Feng HU
Chinese Journal of Natural Medicines (English Ed.) 2019;17(2):155-160
Romipeptides A and B (1 and 2), two new romidepsin derivatives, and three known compounds, chromopeptide A (3), romidepsin (4) and valine-leucine dipeptide (5) were isolated from the fermentation broth of Chromobacterium violaceum No. 968. Their structures were elucidated by interpretation of their UV, HR-ESI-MS and NMR spectra. The absolute configuration of compound 1 and 2 were established by single crystal X-ray diffraction analysis. Compounds 1-5 were evaluated for their anti-proliferative activities against three human cancer cell lines, SW620, HL60, and A549. The results showed most of these compounds exhibited antitumor activities in vitro, in which compound 2 displayed potent cytotoxicity to SW620, HL60 and A549 cell lines, with IC of 12.5, 6.7 and 5.7 nmol·L, respectively.
Antineoplastic Agents
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chemistry
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pharmacology
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Cell Line, Tumor
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Cell Proliferation
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drug effects
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Cell Survival
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drug effects
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Chemistry Techniques, Analytical
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Chromobacterium
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metabolism
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Depsipeptides
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chemistry
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pharmacology
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Dipeptides
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chemistry
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Drug Screening Assays, Antitumor
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Fermentation
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Humans
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Molecular Structure
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Peptides, Cyclic
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chemistry
4.Peptides and polyketides isolated from the marine sponge-derived fungus Aspergillus terreus SCSIO 41008.
Xiao-Wei LUO ; Yun LIN ; Yong-Jun LU ; Xue-Feng ZHOU ; Yong-Hong LIU
Chinese Journal of Natural Medicines (English Ed.) 2019;17(2):149-154
Two new isomeric modified tripeptides, aspergillamides C and D (compounds 1 and 2), together with fifteen known compounds (compounds 3-17), were obtained from the marine sponge-derived fungus Aspergillus terreus SCSIO 41008. The structures of the new compounds, including absolute configurations, were determined by extensive analyses of spectroscopic data (NMR, MS, UV, and IR) and comparisons between the calculated and experimental electronic circular dichroism (ECD) spectra. Butyrolactone I (compound 11) exhibited strong inhibitory effects against Mycobacterium tuberculosis protein tyrosine phosphatase B (MptpB) with the IC being 5.11 ± 0.53 μmol·L, and acted as a noncompetitive inhibitor based on kinetic analysis.
4-Butyrolactone
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analogs & derivatives
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chemistry
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isolation & purification
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pharmacology
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Animals
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Aspergillus
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chemistry
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Chemistry Techniques, Analytical
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Dipeptides
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chemistry
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isolation & purification
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pharmacology
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Enzyme Inhibitors
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chemistry
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isolation & purification
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pharmacology
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Indoles
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chemistry
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isolation & purification
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pharmacology
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Molecular Structure
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Mycobacterium tuberculosis
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drug effects
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Peptides
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chemistry
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isolation & purification
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pharmacology
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Polyketides
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chemistry
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isolation & purification
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pharmacology
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Porifera
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microbiology
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Protein Tyrosine Phosphatases
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chemistry
5.Mass Spectral Character of Fentanyl Analogues.
Jin YAN ; Zhen Dong HUA ; Wei JIA ; Cui Mei LIU
Journal of Forensic Medicine 2019;35(2):216-223
Objective To provide the reference for the identification of unknown fentanyl analogues by studying the characteristic ions and main fragmentation pathways of fentanyl analogues in the modes of collision induced dissociation (CID) and electron ionization (EI). Methods Nine fentanyl analogues (2, 2'-difluorofentanyl, acetyl fentanyl, fentanyl, butyl fentanyl, valeryl fentanyl, acryloyl fentanyl, furan fentanyl, 4-fluorine isobutyl fentanyl, carfentanyl) were selected and analyzed with ultra-high performance liquid chromatography-quadrupole time-of-flight-mass spectrometry (UHPLC-QTOF-MS) and gas chromatography-mass spectrometry (GC-MS). The mass spectrum obtained was analyzed. The CID and EI fragmentation routes of fentanyl analogues were speculated. Results The CID and EI fragmentation pathways were highly similar. In the CID mode, characteristic ions were formed by the carbon-nitrogen bond cleavage between the piperidine ring and the N-phenyl-amide moiety, within the piperidine ring, and between the phenethyl and piperidine ring. While in the EI mode, dissociation of the piperidine ring, as well as cleavage between the piperidine ring and the phenethyl were the main fragmentation pathways. Conclusion This study summarizes the main fragmentation pathways and characteristic ions of fentanyl analogues in the CID and EI modes, which is useful for forensic laboratories to identify and structural analyze fentanyl type new psychoactive substance in practical work.
Chemistry Techniques, Analytical/methods*
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Chromatography, High Pressure Liquid
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Fentanyl/analysis*
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Gas Chromatography-Mass Spectrometry
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Humans
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Mass Spectrometry
6.Experimental factors affecting recovery of puerarin in microdialysis.
Shuyu ZHAN ; Yu'er RUAN ; Guoqiang LIU ; Baoyue DING ; Qing SHAO
Journal of Zhejiang University. Medical sciences 2018;47(1):64-70
OBJECTIVE:
: To analyze experimental factors affecting recovery of puerarin in microdialysis.
METHODS:
: Puerarin concentration in microdialysate samples was determined by high performance liquid chromatography. The methods of direct dialysis, retrodialysis and the zero-net flux were used to calculate recovery, respectively. The effects of perfusate composition, the analyte concentration, perfusate flow rate, medium temperature and stir rates of the dialysis medium on recovery were investigated.
RESULTS:
: There were significant differences in the recovery values among direct dialysis, retrodialysis and zero-net flux methods. The recovery for 0.9% NaCl solution, Ringer's solution, PBS and anticoagulant dextrose solution as perfusate fluid were (71.25±2.36)%,(73.48±1.41)%,(68.50±2.43)% and (74.98±1.16)%, respectively. The composition of perfusate fluid had significant influence on the recovery(<0.01). At the same flow rate, recovery was independent of the analyte concentration. At the same concentration, the recovery was decrease with the increasing flow rate in an exponential relationship. The recovery increased with the raising temperature and stir rate of the dialysis medium, and the recovery remained stable when the stir rate reached above 200 rpm.
CONCLUSIONS
: A study method for recovery of puerarin in microdialysis has been established, and the recovery of puerarin is affected by calculating methods, perfusate fluids, flow rate, medium temperature and stir rate, but not affected by analyte concentrations.
Chemistry Techniques, Analytical
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methods
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Chromatography, High Pressure Liquid
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Isoflavones
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isolation & purification
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Microdialysis
7.A pair of cyclopeptide epimers from the seeds of Celosia argentea.
Feng-Jie LIU ; Zhi-Hua ZHU ; Yan JIANG ; Hui-Jun LI
Chinese Journal of Natural Medicines (English Ed.) 2018;16(1):63-69
Two cyclopeptides, celogentin L (1) and its epimer lyciumin A (2) were firstly isolated from Celosia argentea L.. The planar structures of the two compounds were fully determined by spectroscopic data, including 1D-, 2D-NMR, and HR-ESI/MS. The absolute configurations of amino acid components were assigned via chiral-phase HPLC analyses after acid hydrolysis. Furthermore, the configuration of C-N linkage at the glycine Cα was elucidated by extensive analyses of 2D-NMR and comparison of the experimental and calculated electronic circular dichroism (ECD) spectra. Cytotoxicity of the two compounds against human alveolar epithelial A549, hepatocellular carcinoma HepG2, and cervical cancer Hela cell lines was assayed. Although both of them were inactive in these cells, the present findings add new facets for the chemistry of Celosia argentea.
A549 Cells
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Cell Survival
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drug effects
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Celosia
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chemistry
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Chemistry Techniques, Analytical
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HeLa Cells
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Hep G2 Cells
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Humans
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Molecular Conformation
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Molecular Structure
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Peptides, Cyclic
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chemistry
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isolation & purification
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toxicity
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Seeds
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chemistry
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Stereoisomerism
8.Holistic evaluation of San-Huang Tablets using a combination of multi-wavelength quantitative fingerprinting and radical-scavenging assays.
Yan WANG ; Guo-Xiang SUN ; Yang JIN ; Xiu-Man XIE ; Ying-Chun LIU ; Di-Di MA ; Jing ZHANG ; Jia-Yue GAO ; Yan-Fei LI
Chinese Journal of Natural Medicines (English Ed.) 2017;15(4):310-320
The present study was designed to establish a multi-wavelength quantitative fingerprinting method for San-Huang Tablets (SHT), a widely used and commercially available herbal preparation, where high performance liquid chromatography (HPLC) with a diode array detector (DAD) was employed to obtain the fingerprint profiles. A simple linear quantitative fingerprint method (SLQFM) coupled with multi-ingredient simultaneous determination was developed to evaluate the quality consistency of the tested samples qualitatively and quantitatively. Additionally, the component-activity relationship between chromatographic fingerprints and total radical-scavenging capacity in vitro (as assessed using the 1, 1-diphenyl-2-picrylhydrazyl (DPPH) assay) was investigated by partial least squares regression (PLSR) analysis to predict the antioxidant capacity of new samples from the chromatographic fingerprints and identify the main active constituents that can be used as the target markers for the quality control of SHT. In conclusion, the strategy developed in the present study was effective and reliable, which can be employed for holistic evaluation and accurate discrimination for the quality consistency of SHT preparations and other traditional Chinese medicine (TCM) and herbal preparations as well.
Antioxidants
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chemistry
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Biphenyl Compounds
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chemistry
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Chemistry Techniques, Analytical
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methods
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Chromatography, High Pressure Liquid
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methods
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Drugs, Chinese Herbal
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chemistry
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Free Radicals
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chemistry
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Molecular Structure
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Picrates
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chemistry
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Quality Control
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Tablets
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chemistry

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