1.Status quo of and challenges for research on rust disease in medicinal plants.
Zhong-Lian YU ; Juan YANG ; Mei-Yan LEI ; Jian QUAN ; Tian-Jian YANG ; Cheng-Qian YANG
China Journal of Chinese Materia Medica 2021;46(14):3566-3576
Medicinal plants are beneficial to human health. However,most of the major producing regions of medicinal plants suffer from rust disease,which threatens the yield and quality of Chinese medicinal materials,thus causes huge economic loss,and hinders the sustainable development of the Chinese medicine industry. By the end of 2020,rust disease had been reported in medicinal plants of 76 species and 33 families. In the 76 species,79 rust pathogens were detected. The majority of these pathogens belonged to Puccinia( 33,39. 24%),Coleosporium( 14,15. 19%),and Aecidium( 11,13. 92%). Of these 79 rust pathogens,10 were autoecious and 13 were heteroecious. Through literature research,this study reviewed the symptoms,pathogen species,severity and distribution,prevalence and occurrence conditions,and control measures of rust disease in medicinal plants,and thereby summarized the research status of rust disease in medicinal plants and the gap with other plants,which is expected to serve as a reference for further research on rust disease in medicinal plants.
Basidiomycota/genetics*
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Humans
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Plant Diseases
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Plants, Medicinal
2.Discovery and functional verification of endogenous glucanases for scleroglucan hydrolysis in Sclerotium rolfsii.
Weizhu ZENG ; Runqing TAN ; Jingwen ZHOU
Chinese Journal of Biotechnology 2021;37(1):207-217
Scleroglucan is a high-molecular water-soluble microbial exopolysaccharide and mainly applied in the fields of petroleum, food, medicine and cosmetics. The high molecular weight of scleroglucan produced by microbial fermentation leads to low solubility, high viscosity and poor dispersibility, thus bringing a series of difficulties to extraction, preservation and application. It is important to explore suitable degradation method to adjust the molecular weight of scleroglucan for expanding its industrial application. Taking Sclerotium rolfsii WSH-G01 as a model strain, in which functional annotations of the glucanase genes were conducted by whole genome sequencing. Based on design of culture system for culture system for differential expression of β-glucanase, endogenous β-glucanase genes in S. rolfsii WSH-G01 were excavated by transcriptomics analysis. Functions of these potential hydrolases were further verified. Finally, 14 potential endogenous hydrolase genes were obtained from S. rolfsii. After heterologous overexpression in Pichia pastoris, 10 soluble enzymes were obtained and 5 of them had the activity of laminarin hydrolysis by SDS-PAGE and enzyme activity analysis. Further investigation of the 5 endogenous hydrolases on scleroglucan degradation showed that enzyme GME9860 has positive hydrolysis effect. The obtained results provide references not only for obtaining low and medium molecular weight of scleroglucan with enzymatic hydrolysis, but also for producing different molecular weight of scleroglucan during S. rolfsii fermentation process with metabolic engineering.
Basidiomycota/genetics*
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Glucans
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Hydrolysis
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Saccharomycetales
3.Genome-wide identification and expression analysis of CSLA gene family of Dendrobium catenatum.
Ya-Qian GAO ; Xue-Liang CHEN ; Dong-Hong CHEN ; Jing-Jing LIU ; Jin-Ping SI
China Journal of Chinese Materia Medica 2020;45(13):3120-3127
Glucomannan is the key active ingredient of Dendrobium catenatum, and CSLA family is responsible for glucomannan biosynthesis. In order to systematically evaluate the CSLA family members of D. catenatum, the bioinformatics methods were performed for genome-wide identification of DcCSLA gene family members through the genomic data of D. catenatum downloaded from the NCBI database, and further analyses of their phylogenetic relationship, gene structure, protein conserved domains and motifs, promoter cis-elements and gene expression profiles in response to stresses. The results showed that D. catenatum contains 13 CSLA members, all of which contain 9-10 exons. In the evolutionary relationship, CSLA genes were clustered into 5 groups, DcCSLA genes were distributed in all branches. Among which the ancestral genes of groupI existed before the monocot-dicot divergence, and groupⅡ-Ⅴ only existed in the monocot plants, indicating that group Ⅰ represents the earliest origin group. CSLA proteins are characteristic of the signature CESA_CaSu_A2 domain. Their promoter regions contain cis elements related to stresses and hormones. Under different stress treatments, low temperature induces the expression of DcCSLA5 and inhibits the expression of DcCSLA3. Infection of Sclerotium delphinii inhibits DcCSLA3/4/6/8/9/10 expression. Under the treatment of jasmonic acid, DcCSLA11 expression was significantly up-regulated, and DcCSLA2/5/7/12/13 were significantly down-regulated. These results laid a foundation for further study on the function of DcCSLA genes in glucomannan biosynthesis and accumulation.
Basidiomycota
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Cold Temperature
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Dendrobium
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genetics
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Gene Expression Regulation, Plant
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Genome, Plant
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Multigene Family
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Phylogeny
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Plant Proteins
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genetics
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Stress, Physiological
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Transcriptome
4.Influence of diethyl sulfate (DES) mutagenesis on growth properties and pigment secondary metabolites of Phellinus igniarius.
Jing WANG ; Xin-yuan WU ; Wei MA ; Jing CHEN ; Cheng LIU ; Xiu-li WU
China Journal of Chinese Materia Medica 2015;40(12):2293-2298
The diethyl sulfate (DES) mutagenesis was chosen for the mutagenic treatment to Phellinus igniarius, and the relationship of mutagenesis time and death rate was investigated with 0.5% DES. The differences of mycelial growth speed, liquid fermentation mycelia biomass, morphology and pigment classes of secondary metabolites production speed and antioxidant activities of metabolite products were discussed. The study displayed that DES mutagenesis could change mycelial morphology without obvious effect on mycelium growth, and the DES mutagenesis improved antioxidant activities of the active ingredients of P. igniarius and had more antioxidant activity of hypoxia/sugar PC12 nerve cells than that of P. igniarius.
Basidiomycota
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drug effects
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genetics
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growth & development
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metabolism
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Mutagenesis
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Mutagens
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pharmacology
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Mycelium
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drug effects
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genetics
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growth & development
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metabolism
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Pigments, Biological
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analysis
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metabolism
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Secondary Metabolism
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drug effects
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Sulfuric Acid Esters
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pharmacology
5.Expression, purification and characterization of a novel fatty acid synthase from Rhodosporidium toruloides.
Zhiwei ZHU ; Sufang ZHANG ; Xinping LIN ; Wujun LIU ; Zongbao K ZHAO
Chinese Journal of Biotechnology 2014;30(9):1414-1423
Fatty acid synthase (FAS) catalyses the reaction between acetyl-CoA and malonyl-CoA to produce fatty acids. It is one of the most important enzyme in lipid biosynthesis. FAS of the oleaginous yeast Rhodosporidium toruloides has two acyl carrier protein (ACP) domains and a distinct subunit composition compared with FASs of other species. As ACP is a protein cofactor crucial for fatty acid chain elongation, more ACPs in the FAS may facilitate the reaction. To study the biochemical and structural properties of this novel FAS from R. toruloides, plasmids were constructed and transformed into Escherichia coli BL21 (DE3). The strain ZWE06 harboring plasmids pET22b-FAS1 and pET24b-FAS2 could co-overexpress the two subunits. The recombinant FAS was purified by sequentially using ammonium sulphate precipitation, sucrose density gradient centrifugation and anion exchange chromatography. The specific activity of the recombinant FAS was 548 mU/mg. The purified complex would be used to study enzyme kinetics and protein structure of FAS, and heterogeneous expression and purification will facilitate revealing the mechanism of this novel FAS with double ACPs.
Acyl Carrier Protein
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Basidiomycota
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enzymology
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Chromatography
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Escherichia coli
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metabolism
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Fatty Acid Synthases
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biosynthesis
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genetics
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Fatty Acids
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biosynthesis
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Plasmids
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Recombinant Proteins
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biosynthesis
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genetics
6.Production of β-carotene by metabolically engineered Saccharomyces cerevisiae.
Beibei WANG ; Mingyu SHI ; Dong WANG ; Jiaoyang XU ; Yi LIU ; Hongjiang YANG ; Zhubo DAI ; Xueli ZHANG
Chinese Journal of Biotechnology 2014;30(8):1204-1216
β-carotene has a wide range of application in food, pharmaceutical and cosmetic industries. For microbial production of β-carotene in Saccharomyces cerevisiae, the supply of geranylgeranyl diphosphate (GGPP) was firstly increased in S. cerevisiae BY4742 to obtain strain BY4742-T2 through over-expressing truncated 3-hydroxy-3-methylglutaryl-CoA reductase (tHMGR), which is the major rate-limiting enzyme in the mevalonate (MVA) pathway, and GGPP synthase (GGPS), which is a key enzyme in the diterpenoid synthetic pathway. The β-carotene synthetic genes of Pantoea agglomerans and Xanthophyllomyces dendrorhous were further integrated into strain BY4742-T2 for comparing β-carotene production. Over-expression of tHMGR and GGPS genes led to 26.0-fold increase of β-carotene production. In addition, genes from X. dendrorhous was more efficient than those from P. agglomerans for β-carotene production in S. cerevisiae. Strain BW02 was obtained which produced 1.56 mg/g (dry cell weight) β-carotene, which could be used further for constructing cell factories for β-carotene production.
Basidiomycota
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enzymology
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Farnesyltranstransferase
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genetics
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metabolism
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Hydroxymethylglutaryl CoA Reductases
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genetics
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metabolism
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Metabolic Engineering
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Polyisoprenyl Phosphates
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Saccharomyces cerevisiae
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metabolism
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beta Carotene
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biosynthesis
7.Molecular cloning and characterization of S-adenosyl-L-methionine decarboxylase gene (DoSAMDC1) in Dendrobium officinale.
Ming-Ming ZHAO ; Gang ZHANG ; Da-Wei ZHANG ; Shun-Xing GUO
Acta Pharmaceutica Sinica 2013;48(6):946-952
S-Adenosyl-L-methionine decarboxylase (SAMDC) is a key enzyme in the polyamines biosynthesis, thus is essential for basic physiological and biochemical processes in plant. In the present study, a full length cDNA of DoSAMDC1 gene was obtained from symbiotic germinated seeds of an endangered medicinal orchid species Dendrobium officinale, using the rapid amplification of cDNA ends (RACE)-PCR technique for the first time. The full length cDNA was 1 979 bp, with three open reading frames, i.e. tiny-uORF, small-uORF and main ORF (mORF). The mORF was deduced to encode a 368 amino acid (aa) protein with a molecular mass of 40.7 kD and a theoretical isoelectric point of 5.2. The deduced DoSAMDC1 protein, without signal peptide, had two highly conserved function domains (proenzyme cleavage site and PEST domain) and a 22-aa transmembrane domain (89-110). Multiple sequence alignments and phylogenetic relationship analyses revealed DoSAMDC1 had a higher level of sequence similarity to monocot SAMDCs than those of dicot. Expression patterns using qRT-PCR analyses showed that DoSAMDC1 transcripts were expressed constitutively without significant change in the five tissues (not infected with fungi). While in the symbiotic germinated seeds, the expression level was enhanced by 2.74 fold over that in the none-germinated seeds, indicating possible involvement of the gene in symbiotic seed germination of D. officinale.
Adenosylmethionine Decarboxylase
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genetics
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isolation & purification
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Amino Acid Sequence
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Basidiomycota
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physiology
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Cloning, Molecular
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DNA, Complementary
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genetics
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Dendrobium
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enzymology
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genetics
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microbiology
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Germination
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Open Reading Frames
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Phylogeny
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Plants, Medicinal
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enzymology
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genetics
;
microbiology
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Seeds
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genetics
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growth & development
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microbiology
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Sequence Alignment
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Symbiosis
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physiology
8.Effects of inotodiol extracts from inonotus obliquus on proliferation cycle and apoptotic gene of human lung adenocarcinoma cell line A549.
Xiu-Hong ZHONG ; Li-Bo WANG ; Dong-Zhi SUN
Chinese journal of integrative medicine 2011;17(3):218-223
OBJECTIVETo observe the proliferation inhibition, apoptosis, and cell proliferation cycle of human lung carcinoma cell line A549 treated with Inotodiol extracts from Inonotus obliquus and explore the possibility of Inotodiol extracts from Inonotus obliquus as a new tumor chemopreventive drug.
METHODSHuman lung cancer cell line A549 was treated with different concentrations of Inotodiol, the effects of Inotodiol on cell apoptosis, the expression of Ki-67, Bcl-2, Bax, and p53 and cell cycle were detected by TUNEL assay, immunohistochemistry, and flow cytometry assay respectively.
RESULTSInotodiol extracts had antiproliferation effect on human lung carcinoma cell line A549. The expression of Ki-67 decreased with the increase of Inotodiol concentration and exposure time (P<0.05), in a dose-dependent and time-dependent manner. The typical characteristics of the apoptosis of A549 cells treated with Inotodiol were observed, and the apoptotic rate of A549 cell at 48 h was the highest by TUNEL assay. Inotodiol arrested A549 cells in the S phase, and apoptotic peak was observed by flow cytometry. Immunocytochemistry indicated that the expression of Bcl-2 protein decreased, while the expression of p53 and Bax proteins increased in A549 cells treated with Inotodiol, compared with the control cells (P<0.05).
CONCLUSIONInotodiol can inhibit proliferation and induce the apoptosis of A549 cells, and its molecular mechanism may be associated with the up-regulating expression of p53 and bax proteins and down-regulating expression of Bcl-2 protein, which arrested A549 cells in S phase.
Adenocarcinoma ; drug therapy ; genetics ; metabolism ; pathology ; Apoptosis ; drug effects ; genetics ; Basidiomycota ; chemistry ; Cell Cycle ; drug effects ; Cell Line, Tumor ; Cell Proliferation ; drug effects ; Drug Evaluation, Preclinical ; Drugs, Chinese Herbal ; pharmacology ; therapeutic use ; Gene Expression Regulation, Neoplastic ; drug effects ; Genes, bcl-2 ; drug effects ; Genes, p53 ; drug effects ; Humans ; Ki-67 Antigen ; metabolism ; Lanosterol ; analogs & derivatives ; pharmacology ; therapeutic use ; Lung Neoplasms ; drug therapy ; genetics ; metabolism ; pathology ; Phytotherapy ; bcl-2-Associated X Protein ; genetics
9.Characterization of cytotoxic compound from mangrove derived fungi Irpex hydnoides VB4.
B Valentin BHIMBA ; D A Agnel Defora FRANCO ; Geena Mary JOSE ; Jibi Merin MATHEW ; Elsa Lycias JOEL
Asian Pacific Journal of Tropical Biomedicine 2011;1(3):223-226
OBJECTIVETo investigate the cytotoxic activity of endophytic fungi isolated from mangrove fungi.
METHODSIn the present study the DNA was isolated and the ITS region of 5.8s rRNA was amplified using specific primers ITS 1 and ITS4 and sequence was determined using automated sequencers. Blast search sequence similarity was found against the existing non redundant nucleotide sequence database thus, identified as Aspergilus flavus, Hyporcaea lixii, Aspergillus niger, Eutorium amstelodami, Irpex hydnoides and Neurospora crassa. Among the seven isolates, one fungi Irpex hydnoides was selected for further studies. The fungi were grown in sabouraud broth for five days and filtrate were separated and subjected to ethyl acetate for further studies.
RESULTSNearly half (49.25%) of the extracts showed activity (IC50 of 125µg/mL). These values were within the cutoff point of the National Cancer Institute criteria for cytotoxicity (IC50<20 µg/mL) in the screening of crude plant extracts. The GC MS analysis revealed that the active principals might be Tetradecane (6.26%) with the RT 8.606.
CONCLUSIONSIt is clear from the present study that mangrove fungi with bioactive metabolites can be expected to provide high quality biological material for high throughout biochemical, anti cancer screening programmes. The results help us conclude that the potential of using metabolic engineering and post genomic approaches to isolate more novel bioactive compounds and to make their possible commercial application is not far off.
Basidiomycota ; chemistry ; classification ; genetics ; metabolism ; Biological Products ; chemistry ; toxicity ; Cell Survival ; drug effects ; DNA, Ribosomal Spacer ; Gas Chromatography-Mass Spectrometry ; Hep G2 Cells ; Humans ; Verbenaceae ; microbiology
10.Characterization and evaluation of an astaxanthin over-producing Phaffia rhodozyma.
Hui NI ; Qinglin HONG ; Anfeng XIAO ; Lijun LI ; Huinong CAI ; Wenjin SU
Chinese Journal of Biotechnology 2011;27(7):1065-1075
We evaluated an astaxanthin overproducing Phaffia rhodozyma JMU-MVP14, and developed astaxanthin high-yielding fermentation process. We analyzed several fermentation parameters, i.e., biomass, astaxanthin and total carotenoids content to compare the characteristics of P rhodozyma JMU-MVP14 and the original strain through flask fermentation experiments. We conducted batch and fed-batch fermentation experiments in 7 L fermentor to investigate the effects of pH controlling models and feeding medium compositions on the production of astaxanthin. We further evaluated the capability and practical value of P rhodozyma JMU-MVP14 by fed-batch cultivation in the 1 m3 fermentor. Flask fermentation experiments revealed that P. rhodozyma JMU-MVP14 produced high yield of astaxanthin and carotenoids with specific productivity of astaxanthin and specific productivity of total carotenoids of 6.01 mg/g and 10.38 mg/g. Results of batch culture experiments in the 7 L fermentor showed that controlling the pH by ammonia auto-feeding was better than discontinuously adjusting pH value at 6.0 with regard to the high productivities of biomasses and astaxanthin. This P. rhodozyma strain synthesized astaxanthin partially linked to the growth with the Ks and pmax of 0.20 h ' and 21.73 g/L, respectively. Results of batch-fed fermentations in 7 L fermentor indicated that the complex feeding medium consisted of 50% glucose, 0.5% yeast extract and 0.3% corn steep syrup had lower astaxanthin productivity than the simple feeding medium containing only 50% glucose, which produced biomass, volumetric productivity of astaxanthin, volumetric productivity of total carotenoids, specific productivity of astaxanthin and total carotenoids at 32.81 g/L, 155.99 mg/L, 4.94 mg/g, 399.99 mg/L and 12.19 mg/g, respectively. As fed-batch cultured in 1 m3 fermentor, P rhodozyma JMU-MVP14 yielded 85.11 g/L of biomass, 279.96 mg/L of volumetric productivity of astaxanthin, 618.01 mg/L of volumetric productivity of total carotenoids, 3.29 mg/g of specific productivity of astaxanthin and 7.26 mg/g of specific productivity of total carotenoids. Additionally, P rhodozyma JMU-MVP14 cell contained 21.54% of protein, 41.34% of carbohydrate and 34.31% of lipid. These comprehensive results suggest that P. rhodozyma JMU-MVPl14 has great practical prosperity related to its strong ability to produce astaxanthin and good value byproducts.
Basidiomycota
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genetics
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growth & development
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metabolism
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Batch Cell Culture Techniques
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Carotenoids
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biosynthesis
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Culture Media
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Fermentation
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Hydrogen-Ion Concentration
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Industrial Microbiology
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Kinetics
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Xanthophylls
;
biosynthesis

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