1.Visualization method of type Ⅳ pili and its application in the study of pili function.
Chinese Journal of Biotechnology 2023;39(11):4534-4549
As an important protein structure on the surface of bacteria, type Ⅳ pili (TFP) is the sensing and moving organ of bacteria. It plays a variety of roles in bacterial physiology, cell adhesion, host cell invasion, DNA uptake, protein secretion, biofilm formation, cell movement and electron transmission. With the rapid development of research methods, technical equipment and pili visualization tools, increasing number of studies have revealed various functions of pili in cellular activities, which greatly facilitated the microbial single cell research. This review focuses on the pili visualization method and its application in the functional research of TFP, providing ideas for the research and application of TFP in biology, medicine and ecology.
Fimbriae, Bacterial/metabolism*
;
Bacterial Proteins/genetics*
;
Bacterial Physiological Phenomena
;
Bacterial Adhesion/physiology*
2.Reciprocal Regulation between Fur and Two RyhB Homologs in
Bin NI ; Hai Sheng WU ; You Quan XIN ; Qing Wen ZHANG ; Yi Quan ZHANG
Biomedical and Environmental Sciences 2021;34(4):299-308
Objective:
To investigate reciprocal regulation between Fur and two RyhB homologs in
Methods:
Regulatory relationships were assessed by a combination of colony morphology assay, primer extension, electrophoretic mobility shift assay and DNase I footprinting.
Results:
Fur bound to the promoter-proximal DNA regions of
Conclusion
Fur and the two RyhB homologs exert negative reciprocal regulation, and RyhB homologs have a positive regulatory effect on biofilm formation in
Bacterial Proteins/metabolism*
;
Biofilms
;
Gene Expression Regulation, Bacterial/physiology*
;
Yersinia pestis/physiology*
3.Preliminary study on the role of novel LysR family gene kp05372 in Klebsiella pneumoniae of forest musk deer.
Wei YANG ; Wu-You WANG ; Wei ZHAO ; Jian-Guo CHENG ; Yin WANG ; Xue-Ping YAO ; Ze-Xiao YANG ; Dong YU ; Yan LUO
Journal of Zhejiang University. Science. B 2020;21(2):137-154
LysR-type transcriptional regulators are involved in the regulation of numerous cellular metabolic processes in Klebsiella pneumoniae, leading to severe infection. Earlier, we found a novel LysR family gene, named kp05372, in a strain of K. pneumoniae (designated GPKP) isolated from forest musk deer. To study the function of this gene in relation to the biological characteristics of GPKP, we used the suicide plasmid and conjugative transfer methods to construct deletion mutant strain GPKP-Δkp05372; moreover, we also constructed the GPKP-Δkp05372+ complemented strain. The role of this gene was determined by comparing the following characteristics of three strains: growth curves, biofilm formation, drug resistance, stress resistance, median lethal dose (LD50), organ colonization ability, and the histopathology of GPKP. Real-time polymerase chain reaction (RT-PCR) was used to test the expression level of seven genes upstream of kp05372. There was no significant difference in the growth rates when comparing the three bacterial strains, and no significant difference was recorded at different osmotic pressures, temperatures, salt contents, or hydrogen peroxide concentrations. The GPKP-Δkp05372 mutant formed a weak biofilm, and the other two strains formed medium biofilm. The drug resistance of the GPKP-Δkp05372 mutant toward cephalothin, cotrimoxazole, and polymyxin B was changed. The acid tolerance of the deletion strain was stronger than that of the other two strains. The LD50 values of the wild-type and complemented strains were 174-fold and 77-fold higher than that of the GPKP-Δkp05372 mutant, respectively. The colonization ability of the GPKP-Δkp05372 mutant in the heart, liver, spleen, kidney, and intestine was the weakest. The three strains caused different histopathological changes in the liver and lungs. In the GPKP-Δkp05372 mutant, the relative expression levels of kp05374 and kp05379 were increased to 1.32-fold and 1.42-fold, respectively, while the level of kp05378 was decreased by 42%. Overall, the deletion of kp05372 gene leads to changes in the following: drug resistance and acid tolerance; decreases in virulence, biofilm formation, and colonization ability of GPKP; and regulation of the upstream region of adjacent genes.
Animals
;
Bacterial Proteins/physiology*
;
Biofilms
;
Deer/microbiology*
;
Drug Resistance, Bacterial
;
Female
;
Klebsiella Infections/pathology*
;
Klebsiella pneumoniae/growth & development*
;
Male
;
Mice
;
Transcription Factors/physiology*
4.Identification of a novel strain, Streptomyces blastmyceticus JZB130180, and evaluation of its biocontrol efficacy against Monilinia fructicola.
Mi NI ; Qiong WU ; Hong-Li WANG ; Wei-Cheng LIU ; Bin HU ; Dian-Peng ZHANG ; Juan ZHAO ; De-Wen LIU ; Cai-Ge LU
Journal of Zhejiang University. Science. B 2019;20(1):84-94
Peach brown rot, caused by Monilinia fructicola, is one of the most serious peach diseases. A strain belonging to the Actinomycetales, named Streptomyces blastmyceticus JZB130180, was found to have a strong inhibitory effect on M. fructicola in confrontation culture. Following the inoculation of peaches in vitro, it was revealed that the fermentation broth of S. blastmyceticus JZB130180 had a significant inhibitory effect on disease development by M. fructicola. The fermentation broth of S. blastmyceticus JZB130180 had an EC50 (concentration for 50% of maximal effect) of 38.3 µg/mL against M. fructicola, as determined in an indoor toxicity test. Analysis of the physicochemical properties of the fermentation broth revealed that it was tolerant of acid and alkaline conditions, temperature, and ultraviolet radiation. In addition, chitinase, cellulase, and protease were also found to be secreted by the strain. The results of this study suggest that S. blastmyceticus JZB130180 may be used for the biocontrol of peach brown rot.
Ascomycota/pathogenicity*
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Bacterial Proteins/metabolism*
;
Cell Wall/metabolism*
;
Cellulase/metabolism*
;
Chitinases/metabolism*
;
Fermentation
;
Fruit/microbiology*
;
Pest Control, Biological/methods*
;
Phylogeny
;
Plant Diseases/prevention & control*
;
Prunus persica/microbiology*
;
Siderophores/metabolism*
;
Streptomyces/physiology*
5.ToxR Is Required for Biofilm Formation and Motility of Vibrio Parahaemolyticus.
Long CHEN ; Yue QIU ; Hao TANG ; Ling Fei HU ; Wen Hui YANG ; Xiao Jue ZHU ; Xin Xiang HUANG ; Tang WANG ; Yi Quan ZHANG
Biomedical and Environmental Sciences 2018;31(11):848-850
Bacterial Proteins
;
genetics
;
metabolism
;
Biofilms
;
DNA-Binding Proteins
;
genetics
;
metabolism
;
Flagella
;
genetics
;
metabolism
;
Gene Expression Regulation, Bacterial
;
Transcription Factors
;
genetics
;
metabolism
;
Vibrio parahaemolyticus
;
cytology
;
genetics
;
growth & development
;
physiology
6.Examine the Correlation between Heat Shock Protein IbpA and Heat Tolerance in Cronobacter sakazakii.
Zhi Jing ZHAO ; Bin WANG ; Jing YUAN ; Hao Yu LIANG ; Si Guo DONG ; Ming ZENG
Biomedical and Environmental Sciences 2017;30(8):606-610
We used a proteomic approach to identify IbpA in Cronobacter sakazakii (C. sakazaki), which is related to heat tolerance in this strain. The abundance of IbpA in C. sakazakii strains strongly increased after heat shock. C. sakazakii CMCC 45402 ibpA deletion mutants were successfully constructed. The C. sakazakii CMCC 45402 ΔibpA and wild-type strains could not be distinguished based on colony morphology on LB agar plates or biochemical assays. The growth of the C. sakazakii CMCC 45402 ΔibpA mutant in heat shock conditions was indistinguishable from that of the isogenic wild-type, but showed greater heat resistance than E. coli O157:H7 strain CMCC 44828. This study suggests that the absence of a single ibpA gene has no obvious effect on the phenotype or heat resistance of the strain C. sakazakii CMCC 45402.
Bacterial Proteins
;
genetics
;
metabolism
;
Cronobacter sakazakii
;
genetics
;
physiology
;
Gene Expression Regulation, Bacterial
;
physiology
;
Genotype
;
Heat-Shock Proteins
;
genetics
;
metabolism
;
Hot Temperature
;
Stress, Physiological
7.A Five-year Surveillance of Carbapenemase-producing Klebsiella pneumoniae in a Pediatric Hospital in China Reveals Increased Predominance of NDM-1.
Fang DONG ; Jie LU ; Yan WANG ; Jin SHI ; Jing Hui ZHEN ; Ping CHU ; Yang ZHEN ; Shu Jing HAN ; Yong Li GUO ; Wen Qi SONG ;
Biomedical and Environmental Sciences 2017;30(8):562-569
OBJECTIVETo characterize carbapenem (CPM)-non-susceptible Klebsiella pneumoniae (K. pneumoniae) and carbape-nemase produced by these strains isolated from Beijing Children's Hospital based on a five-year surveillance.
METHODSThe Minimal Inhibition Concentration values for 15 antibiotics were assessed using the Phonix100 compact system. PCR amplification and DNA sequencing were used to detect genes encoding carbapenemases. WHONET 5.6 was finally used for resistance analysis.
RESULTSIn total, 179 strains of CPM-non-susceptible K. pneumoniae were isolated from January, 2010 to December, 2014. The rates of non-susceptible to imipenem and meropenem were 95.0% and 95.6%, respectively. In the 179 strains, 95 (53.1%) strains carried the blaIMP gene, and IMP-4 and IMP-8 were detected in 92 (96.8%) and 3 (3.2%) IMP-producing isolates, respectively. 65 (36.3%) strains carried the blaNDM-1 gene. 6 (3.4%) strains carried the blaKPC gene, and KPC-2 were detected in 6 KPC-producing isolates. In addition, New Delhi-Metallo-1 (NDM-1) producing isolates increased from 7.1% to 63.0% in five years and IMP-4 producing isolates decreased from 75.0% to 28.3%.
CONCLUSIONHigh frequencies of multiple resistances to antibiotics were observed in the CPM-non-susceptible K. pneumoniae strains isolated from Beijing Children's Hospital. The production of IMP-4 and NDM-1 metallo-β-lactamases appears to be an important mechanism for CPM-non- susceptible in K. pneumoniae.
Anti-Bacterial Agents ; pharmacology ; Bacterial Proteins ; genetics ; metabolism ; Child ; China ; epidemiology ; Drug Resistance ; Gene Expression Regulation, Bacterial ; physiology ; Gene Expression Regulation, Enzymologic ; physiology ; Hospitals, Pediatric ; Humans ; Klebsiella Infections ; epidemiology ; microbiology ; Klebsiella pneumoniae ; drug effects ; enzymology ; genetics ; Microbial Sensitivity Tests ; Population Surveillance ; Time Factors ; beta-Lactamases ; genetics ; metabolism
8.Energy-coupling mechanism of the multidrug resistance transporter AcrB: Evidence for membrane potential-driving hypothesis through mutagenic analysis.
Protein & Cell 2017;8(8):623-627
Amino Acid Substitution
;
Drug Resistance, Multiple, Bacterial
;
physiology
;
Escherichia coli
;
physiology
;
Escherichia coli Proteins
;
genetics
;
metabolism
;
Membrane Potentials
;
physiology
;
Models, Biological
;
Multidrug Resistance-Associated Proteins
;
genetics
;
metabolism
;
Mutation, Missense
9.Structural insights into glutathione-mediated activation of the master regulator PrfA in Listeria monocytogenes.
Yong WANG ; Han FENG ; Yalan ZHU ; Pu GAO
Protein & Cell 2017;8(4):308-312
Bacterial Proteins
;
chemistry
;
genetics
;
metabolism
;
DNA, Bacterial
;
chemistry
;
genetics
;
metabolism
;
Gene Expression Regulation, Bacterial
;
physiology
;
Glutathione
;
metabolism
;
Listeria monocytogenes
;
chemistry
;
genetics
;
metabolism
;
Peptide Termination Factors
;
chemistry
;
genetics
;
metabolism
10.Activation of NF-κB and AP-1 Mediates Hyperproliferation by Inducing β-Catenin and c-Myc in Helicobacter pylori-Infected Gastric Epithelial Cells.
Eunyoung BYUN ; Bohye PARK ; Joo Weon LIM ; Hyeyoung KIM
Yonsei Medical Journal 2016;57(3):647-651
PURPOSE: In the gastric mucosa of Helicobacter pylori (H. pylori)-infected patients with gastritis or adenocarcinoma, proliferation of gastric epithelial cells is increased. Hyperproliferation is related to induction of oncogenes, such as β-catenin and c-myc. Even though transcription factors NF-κB and AP-1 are activated in H. pylori-infected cells, whether NF-κB or AP-1 regulates the expression of β-catenein or c-myc in H. pylori-infected cells has not been clarified. The present study was undertaken to investigate whether H. pylori-induced activation of NF-κB and AP-1 mediates the expression of oncogenes and hyperproliferation of gastric epithelial cells. MATERIALS AND METHODS: Gastric epithelial AGS cells were transiently transfected with mutant genes for IκBα (MAD3) and c-Jun (TAM67) or treated with a specific NF-κB inhibitor caffeic acid phenethyl ester (CAPE) or a selective AP-1 inhibitor SR-11302 to suppress activation of NF-κB or AP-1, respecively. As reference cells, the control vector pcDNA was transfected to the cells. Wild-type cells or transfected cells were cultured with or without H. pylori. RESULTS: H. pylori induced activation of NF-κB and AP-1, cell proliferation, and expression of oncogenes (β-catenein, c-myc) in AGS cells, which was inhibited by transfection of MAD3 and TAM67. Wild-type cells and the cells transfected with pcDNA showed similar activities of NF-κB and AP-1, proliferation, and oncogene expression regardless of treatment with H. pylori. Both CAPE and SR-11302 inhibited cell proliferation and expression of oncogenes in H. pylori-infected cells. CONCLUSION: H. pylori-induced activation of NF-κB and AP-1 regulates transcription of oncogenes and mediates hyperproliferation in gastric epithelial cells.
Blotting, Western
;
Caffeic Acids
;
Cell Line, Tumor
;
Cell Proliferation
;
DNA, Bacterial/analysis/genetics
;
DNA-Binding Proteins/*metabolism
;
Epithelial Cells/*metabolism
;
Gastric Mucosa/*metabolism/pathology
;
Gastritis/pathology
;
Gene Expression Regulation, Bacterial
;
Helicobacter Infections/metabolism/pathology/physiopathology
;
Helicobacter pylori/pathogenicity/physiology
;
Humans
;
NF-kappa B/antagonists & inhibitors/*biosynthesis/metabolism
;
Peptide Fragments
;
Phenylethyl Alcohol/analogs & derivatives
;
Proto-Oncogene Proteins c-jun
;
Repressor Proteins
;
Transcription Factor AP-1/*biosynthesis
;
Transcription Factors/*metabolism
;
beta Catenin/*metabolism

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