1.A novel homozygous splicing mutation in AK7 causes multiple morphological abnormalities of sperm flagella in patients from consanguineous Pakistani families.
Ansar HUSSAIN ; Huan ZHANG ; Muhammad ZUBAIR ; Wasim SHAH ; Khalid KHAN ; Imtiaz ALI ; Yousaf RAZA ; Aurang ZEB ; Tanveer ABBAS ; Nisar AHMED ; Fazal RAHIM ; Ghulam MUSTAFA ; Meftah UDDIN ; Nadeem ULLAH ; Musavir ABBAS ; Muzammil Ahmad KHAN ; Hui MA ; Bo YANG ; Qing-Hua SHI
Asian Journal of Andrology 2025;27(2):189-195
Multiple morphological abnormalities of the flagella (MMAF) represent a severe form of sperm defects leading to asthenozoospermia and male infertility. In this study, we identified a novel homozygous splicing mutation (c.871-4 ACA>A) in the adenylate kinase 7 (AK7) gene by whole-exome sequencing in infertile individuals. Spermatozoa from affected individuals exhibited typical MMAF characteristics, including coiled, bent, short, absent, and irregular flagella. Transmission electron microscopy analysis showed disorganized axonemal structure and abnormal mitochondrial sheets in sperm flagella. Immunofluorescence staining confirmed the absence of AK7 protein from the patients' spermatozoa, validating the pathogenic nature of the mutation. This study provides direct evidence linking the AK7 gene to MMAF-associated asthenozoospermia in humans, expanding the mutational spectrum of AK7 and enhancing our understanding of the genetic basis of male infertility.
Humans
;
Male
;
Sperm Tail/ultrastructure*
;
Homozygote
;
Consanguinity
;
Asthenozoospermia/pathology*
;
Infertility, Male/genetics*
;
Mutation
;
Pakistan
;
Adenylate Kinase/genetics*
;
Adult
;
Pedigree
;
RNA Splicing
;
Exome Sequencing
;
Spermatozoa
2.Novel homozygous SPAG17 variants cause human male infertility through multiple morphological abnormalities of spermatozoal flagella related to axonemal microtubule doublets.
Tao LIU ; Fazal RAHIM ; Meng-Lei YANG ; Meftah UDDIN ; Jing-Wei YE ; Imtiaz ALI ; Yousaf RAZA ; Abu MANSOOR ; Muhammad SHOAIB ; Mujahid HUSSAIN ; Ihsan KHAN ; Basit SHAH ; Asad KHAN ; Ahmad NISAR ; Hui MA ; Bo XU ; Wasim SHAH ; Qing-Hua SHI
Asian Journal of Andrology 2025;27(2):245-253
Male infertility can result from impaired sperm motility caused by multiple morphological abnormalities of the flagella (MMAF). Distinct projections encircling the central microtubules of the spermatozoal axoneme play pivotal roles in flagellar bending and spermatozoal movement. Mammalian sperm-associated antigen 17 ( SPAG17 ) encodes a conserved axonemal protein of cilia and flagella, forming part of the C1a projection of the central apparatus, with functions related to ciliary/flagellar motility, skeletal growth, and male fertility. This study investigated two novel homozygous SPAG17 mutations (M1: NM_206996.2, c.829+1G>T, p.Asp212_Glu276del; and M2: c.2120del, p.Leu707*) identified in four infertile patients from two consanguineous Pakistani families. These patients displayed the MMAF phenotype confirmed by Papanicolaou staining and scanning electron microscopy assays of spermatozoa. Quantitative real-time polymerase chain reaction (PCR) of patients' spermatozoa also revealed a significant decrease in SPAG17 mRNA expression, and immunofluorescence staining showed the absence of SPAG17 protein signals along the flagella. However, no apparent ciliary-related symptoms or skeletal malformations were observed in the chest X-rays of any of the patients. Transmission electron microscopy of axoneme cross-sections from the patients showed incomplete C1a projection and a higher frequency of missing microtubule doublets 1 and 9 compared with those from fertile controls. Immunofluorescence staining and Western blot analyses of spermatogenesis-associated protein 17 (SPATA17), a component of the C1a projection, and sperm-associated antigen 6 (SPAG6), a marker of the spring layer, revealed disrupted expression of both proteins in the patients' spermatozoa. Altogether, these findings demonstrated that SPAG17 maintains the integrity of spermatozoal flagellar axoneme, expanding the phenotypic spectrum of SPAG17 mutations in humans.
Humans
;
Male
;
Infertility, Male/pathology*
;
Sperm Tail/ultrastructure*
;
Homozygote
;
Microtubule-Associated Proteins/genetics*
;
Axoneme/genetics*
;
Spermatozoa/ultrastructure*
;
Adult
;
Mutation
;
Sperm Motility/genetics*
;
Pedigree
;
Microtubules
;
Microtubule Proteins/genetics*
3.Novel bi-allelic variants in DNAH10 lead to multiple morphological abnormalities of sperm flagella and male infertility.
Muhammad SHOAIB ; Muhammad ZUBAIR ; Wasim SHAH ; Meftah UDDIN ; Ansar HUSSAIN ; Ghulam MUSTAFA ; Fazal RAHIM ; Huan ZHANG ; Imtiaz ALI ; Tanveer ABBAS ; Yousaf RAZA ; Sui-Xing FAN ; Qing-Hua SHI
Asian Journal of Andrology 2025;27(4):516-523
Multiple morphological abnormalities of sperm flagella (MMAF) is a severe form of asthenoteratozoospermia, characterized by morphological abnormalities and reduced motility of sperm, causing male infertility. Although approximately 60% of MMAF cases can be explained genetically, the etiology of the remaining cases is unclear. Here, we identified two novel compound heterozygous variants in the gene, dynein axonemal heavy chain 10 ( DNAH10 ), in three patients from two unrelated Pakistani families using whole-exome sequencing (WES), including one compound heterozygous mutation ( DNAH10 : c.9409C>A [p.P3137T]; c.12946G>C [p.D4316H]) in family 1 and another compound heterozygous mutation ( DNAH10 : c.8849G>A [p.G2950D]; c.11509C>T [p.R3687W]) in family 2. All the identified variants are absent or rare in public genome databases and are predicted to have deleterious effects according to multiple bioinformatic tools. Sanger sequencing revealed that these variants follow an autosomal recessive mode of inheritance. Hematoxylin and eosin (H&E) staining revealed MMAF, including sperm head abnormalities, in the patients. In addition, immunofluorescence staining revealed loss of DNAH10 protein signals along sperm flagella. These findings broaden the spectrum of DNAH10 variants and expand understanding of the genetic basis of male infertility associated with the MMAF phenotype.
Adult
;
Humans
;
Male
;
Alleles
;
Asthenozoospermia/pathology*
;
Axonemal Dyneins/genetics*
;
Dyneins/genetics*
;
Exome Sequencing
;
Infertility, Male/pathology*
;
Mutation
;
Pakistan
;
Pedigree
;
Sperm Tail/pathology*
4.A novel frameshift variant in AXDND1 may cause multiple morphological abnormalities of the sperm flagella in a consanguineous Pakistani family.
Imtiaz ALI ; Meng-Lei YANG ; Fazal RAHIM ; Haider ALI ; Aurang ZEB ; Nisar AHMAD ; Yousaf RAZA ; Wang YUE ; Muhammad SHOAIB ; Tanveer ABBAS ; Wasim SHAH ; Hui MA ; Huan ZHANG ; Hao YIN ; Qing-Hua SHI
Asian Journal of Andrology 2025;27(6):691-696
The syndrome of multiple morphological abnormalities of the sperm flagella (MMAF) is one of the most serious kinds of sperm defects, leading to asthenoteratozoospermia and male infertility. In this study, we use whole-exome sequencing to identify genetic factors that account for male infertility in a patient born from a consanguineous Pakistani couple. A homozygous frameshift mutation (c.1399_1402del; p.Gln468ArgfsTer2) in axonemal dynein light chain domain containing 1 ( AXDND1 ) was identified in the patient. Sanger sequencing data showed that the mutation was cosegregated recessively with male infertility in this family. Papanicolaou staining and scanning electron microscopy analysis of the sperm revealed severely abnormal flagellar morphology in the patient. Immunofluorescence and western blot showed undetectable AXDND1 expression in the sperm of the patient. Transmission electron microscopy analysis showed disorganized sperm axonemal structure in the patient, particularly missing the central pair of microtubules. Immunofluorescence staining showed the absence of sperm-associated antigen 6 (SPAG6) and dynein axonemal light intermediate chain 1 (DNALI1) signals in the sperm flagella of the patient. These findings indicate that AXDND1 is essential for the organization of flagellar axoneme and provide direct evidence that AXDND1 is a MMAF gene in humans, thus expanding the phenotypic spectrum of AXDND1 frameshift mutations.
Humans
;
Male
;
Sperm Tail/ultrastructure*
;
Frameshift Mutation
;
Infertility, Male/pathology*
;
Pakistan
;
Pedigree
;
Consanguinity
;
Axonemal Dyneins/genetics*
;
Adult
;
Spermatozoa
;
Exome Sequencing
5.Molecular detection and characterization of ovine herpesvirus-2 using heminested PCR in Pakistan
Aayesha RIAZ ; Inga DRY ; Robert DALZIEL ; Saif Ur REHMAN ; Muhammad Ali SHAH ; Hafiz Muhammad Naeem AKHTAR ; Arfan YOUSAF ; Ruqia BAIG
Journal of Veterinary Science 2021;22(4):e51-
Background:
Malignant catarrhal fever (MCF) is a highly fatal lymphoproliferative disease of cattle, deer, bison, water buffalo, and pigs caused by the gamma-herpesviruses alcelaphine herpesvirus-1 (AlHV-1) and ovine herpesvirus-2 (OvHV-2).
Objectives:
This study aimed to determine the prevalence of OvHV-2 in sheep, goats, cattle, and buffalo in Rawalpindi and Islamabad, Pakistan, by applying molecular and phylogenetic methods.
Methods:
Blood samples were aspirated from sheep (n = 54), goat (n = 50), cattle (n = 46) and buffalo (n= 50) at a slaughterhouse and several farms. The samples were subjected to heminested polymerase chain reaction (PCR), followed by sequencing and phylogenetic analysis of the OvHV-2 POL gene and the OvHV-2 ORF75 tegument protein gene.
Results:
The highest percentage of MCF positive samples was in sheep (13%), whereas goat, cattle, and buffalo had lower positive percentages, 11%, 9%, and 6.5%, respectively. Four OvHV-2-positive PCR products obtained from sheep samples were sequenced. The sequences obtained were submitted to the NCBI GenBank database (MK852173 for the POL gene;MK840962, MK852171, and MK852172 for the ORF75 tegument protein gene). Phylogenetic analysis revealed a close similarity of study sequences with those of worldwide samples.
Conclusions
This study is the first cross-sectional study on the prevalence and molecular detection of OvHV-2 in apparently healthy cattle and buffalo that could be carrying OvHV-2 acquired from OvHV-2-positive sheep and goats. The results indicate that OvHV-2 is circulating in Pakistan. Further studies are needed to characterize OvHV-2 and elucidate further its prevalence.
6.Molecular detection and characterization of ovine herpesvirus-2 using heminested PCR in Pakistan
Aayesha RIAZ ; Inga DRY ; Robert DALZIEL ; Saif Ur REHMAN ; Muhammad Ali SHAH ; Hafiz Muhammad Naeem AKHTAR ; Arfan YOUSAF ; Ruqia BAIG
Journal of Veterinary Science 2021;22(4):e51-
Background:
Malignant catarrhal fever (MCF) is a highly fatal lymphoproliferative disease of cattle, deer, bison, water buffalo, and pigs caused by the gamma-herpesviruses alcelaphine herpesvirus-1 (AlHV-1) and ovine herpesvirus-2 (OvHV-2).
Objectives:
This study aimed to determine the prevalence of OvHV-2 in sheep, goats, cattle, and buffalo in Rawalpindi and Islamabad, Pakistan, by applying molecular and phylogenetic methods.
Methods:
Blood samples were aspirated from sheep (n = 54), goat (n = 50), cattle (n = 46) and buffalo (n= 50) at a slaughterhouse and several farms. The samples were subjected to heminested polymerase chain reaction (PCR), followed by sequencing and phylogenetic analysis of the OvHV-2 POL gene and the OvHV-2 ORF75 tegument protein gene.
Results:
The highest percentage of MCF positive samples was in sheep (13%), whereas goat, cattle, and buffalo had lower positive percentages, 11%, 9%, and 6.5%, respectively. Four OvHV-2-positive PCR products obtained from sheep samples were sequenced. The sequences obtained were submitted to the NCBI GenBank database (MK852173 for the POL gene;MK840962, MK852171, and MK852172 for the ORF75 tegument protein gene). Phylogenetic analysis revealed a close similarity of study sequences with those of worldwide samples.
Conclusions
This study is the first cross-sectional study on the prevalence and molecular detection of OvHV-2 in apparently healthy cattle and buffalo that could be carrying OvHV-2 acquired from OvHV-2-positive sheep and goats. The results indicate that OvHV-2 is circulating in Pakistan. Further studies are needed to characterize OvHV-2 and elucidate further its prevalence.
7. Scenario of dengue infection & its control in Pakistan: An up-date and way forward
Muhammad Zubair YOUSAF ; Adeena SIDDIQUE ; Muhammad ALI ; Muhammad Zubair YOUSAF ; Usman Ali ASHFAQ
Asian Pacific Journal of Tropical Medicine 2018;11(1):15-23
Dengue fever is one of the major health problems in tropical and subtropical areas throughout the world. The causative agent of dengue fever is the dengue virus which is an enveloped single stranded RNA virus belongs to the family Flaviviridae and has five distinct serotypes (DENV-1, DENV-2, DENV-3, DENV-4 and DENV-5). Dengue virus is transmitted to human via bite of Aedes aegypti and Aedes albopictus mosquitoes. The clinical symptoms of dengue fever ranging from mild to severe form as dengue hemorrhagic fever and dengue shock syndrome. Pakistan is dengue endemic since 1994 but from 2006, Pakistan faced the worst condition regarding dengue in which thousands of people affected by the disease and hundreds of people lost their lives. DENV-2, DENV-3 and DENV-1 are the prevalent serotypes in Pakistan. Common diagnostic techniques are being used in Pakistan such as enzyme-linked immunosorbent assay, polymerase chain reaction and rapid diagnostic tests, while differential diagnosis, limitations of diagnostic methods and poor health care system are the real challenges in dengue diagnosis. Favorable climatic conditions, unplanned urbanization, travelling etc., are major factors responsible for dengue epidemics in Pakistan. This presentation provides update about dengue circumstances in Pakistan and also describes the way how to improve dengue situation in Pakistan.
8. Lethal response of the dengue vectors to the plant extracts from family Anacardiaceae
Ali YOUSAF ; Wan Fatma ZUHARAH ; Wan Fatma ZUHARAH
Asian Pacific Journal of Tropical Biomedicine 2015;5(10):812-818
Objective: To explore the larvicidal activities of different plant parts of Melanochyla fasciculiflora (. M. fasciculiflora), Gluta renghas (. G. renghas), Anacardium occidentale and Mangifera indica from family Anacardiaceae against the laboratory and field strains of dengue vectors Aedes aegypti and Aedes albopictus (. Ae. albopictus). Methods: Leaves and bark parts of study plants were collected from Taman Nageri, Bukit Pancor and Teluk Bahang National Park, Penang, Malaysia. Leaves and stem barks were separated, air dried, ground and extracted with methanol by Soxhlet apparatus. Crude extract was obtained by evaporating the extra solvent in rotary evaporator. The 4th instar larvae from laboratory and field strains were exposed to 50-1. 300 mg/L concentrations according to World Health Organization standard larval bioassay. Larval mortality was recorded after 24 h of exposure. Results: Highest larvicidal activity was exhibited by G. renghas bark extract against Ae. albopictus laboratory strain at 600 mg/L. G. renghas also showed the highest larvicidal activities for other strains as compared to other plant extracts, followed by Mangifera indica and M. fasciculiflora and Anacardium occidentale. Conclusions: Ae. albopictus has been found to be more susceptible as compare to Aedes aegypti in both laboratory and field strains in this study. G. renghas and M. fasciculiflora were tested for the first time and exhibited prompting larvicidal activities against dengue vectors. These results revealed that all the plants especially G. renghas and M. fasciculiflora have the higher larvicidal activities and can be used for the control of dengue vector as a new environment friendly, target specific and low cost phytochemical.

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