1.From Gene Expression to Transcriptome-wide Association Study: Development and Comparison of Methodology
Kun FANG ; Guozhuang LI ; Linting WANG ; Qing LI ; Kexin XU ; Lina ZHAO ; Zhihong WU ; Jianguo ZHANG ; Nan WU
Medical Journal of Peking Union Medical College Hospital 2026;17(1):223-229
Over the past two decades, genome-wide association study(GWAS) has identified numerous genetic variants and loci associated with heritable diseases. With the gradual maturation and saturation of GWAS methodologies, transcriptome-wide association study(TWAS) offers a novel perspective by linkinggenetic phenotypes to gene expression levels. By integrating TWAS with other multi-omics analyses, researchers can gain a deeper understanding of heritable diseases. This article provides an overview of recent groundbreaking and representative TWAS methods and tools, analyzes their strengths and limitations, and discusses future trends in TWAS development.
2.Effect and Mechanism of Exogenous NO in Secondary Metabolism in Scutellaria baicalensis
Kai ZHAO ; Wei MA ; Weili LIU ; Zhihong LOU ; Xiangcai MENG
Chinese Journal of Experimental Traditional Medical Formulae 2026;32(1):250-261
ObjectiveTo investigate the effects of exogenous nitric oxide (NO) on the accumulation and quality formation mechanism of flavonoids in Scutellariae Radix. MethodsFresh roots of Scutellaria baicalensis were treated with sodium nitroprusside (SNP) solutions at concentrations of 0.0, 7.5, and 20 mmol·L-1, respectively. Kits and supporting reaction systems were used to determine the following indicators of samples in each group, including (1) reactive oxygen species: changes in the content of nitric oxide (NO), superoxide anion (O
3.Change trend of compound obesity among different occupational groups in nine provinces of China from 1993 to 2018
Lixin HAO ; Yu WU ; Liusen WANG ; Lili CHEN ; Boya ZHAO ; Zhongting LU ; Zhihong WANG ; Bing ZHANG ; Hongru JIANG ; Huijun WANG
Journal of Environmental and Occupational Medicine 2026;43(2):160-167
Background The global prevalence of obesity is on the rise and is closely associated with various chronic non-communicable diseases such as cardiovascular diseases and diabetes. There is a relative lack of long-term dynamic studies on compound obesity among occupational populations. Objective To explore the changing trends of compound obesity among different occupational groups aged 18–59 years in nine provinces (autonomous regions, municipalities) of China from 1993 to 2018, and to provide a scientific basis for formulating targeted weight management strategies for occupational populations. Methods A total of
4.Exploration of the Dosage Pattern and Mechanism of Chinese Medicines for the Treatment of Alzheimer's Disease Based on Data Mining,Network Pharmacology and Molecular Simulation
Shuyang ZHAO ; Jianhe ZHAO ; Zhihong LIU ; Jun WU ; Ailin LIU ; Jiansong FANG
World Science and Technology-Modernization of Traditional Chinese Medicine 2025;27(6):1766-1779
Objective Based on the Ancient and Modern Medical Case Cloud Platform V2.3.7,analyze the medication pattern and mechanism of action of Chinese medicines commonly used in famous medical cases for the treatment of Alzheimer's disease(AD).Methods The core Chinese medicines for AD were screened according to the inclusion and exclusion criteria by searching the famous Chinese medicine cases in the platform,then established the disease-core Chinese medicines-active ingredients-common targets network.The protein-protein interaction network(PPI)was established through the common targets.Gene oncology(GO)and Kyoto Encyclopedia of Genes and Genomes(KEGG)enrichment analyses were performed by David platform.Molecular docking and dynamics simulations were employed to evaluate the binding affinity and stability between key targets and active ingredients.Results Data mining was performed on all the famous medical cases from the time of database construction to October 2023,and the results were summarized as follows.The high-frequency regulating Qi medications and tonifying Qi medications were Citri Reticulatae Pericarpium and Aurantii Fructus Immaturus;Panax ginseng,Ziziphi Jujubae Fructus,Codonopsis pilosula,Astragali Radix,Atractylodis Macrocephalae Rhizoma,Dioscoreae Rhizoma,and Glycyrrhizae Radix et Rhizoma.The core herbs contained 778 active ingredients and 377 targets;1986 disease targets;79 common targets were obtained after intersection with AD targets,and 7 core targets were identified through PPI network topology analysis,including TNF,AKT1,TP53,PPARG,etc.GO and KEGG pathway enrichment analyses confirmed that the targets of the active ingredients of the core herbs involved 138 pathways,and the core herbs could regulate chemical carcinogenesis-receptor activation、serotonergic synapse、chemical carcinogenesis-reactive oxygen species pathways to treat AD.Molecular docking and molecular dynamics simulation results showed good binding ability and stability between the key targets and the core components.Conclusion Through data mining to analyze the core herbs for the treatment of AD,the present investigation showing the pharmacological mechanism of 12-O-Nicotinoylisolineolone and Odoratin in the treatment of Alzheimer's disease at the molecular level,lay a certain theoretical foundation of 12-O-Nicotinoylisolineolone and Odoratin in the future.
5.Research progress of hemorrhagic transformation after reperfusion therapy for acute ischemic stroke
Journal of Chinese Physician 2025;27(3):472-477
Reperfusion therapy is the most critical treatment for acute ischemic stroke. However, reperfusion treaty-related hemorrhagic transformation is a potential serious complication, which increases the disability rate and fatality rate of patients. The pathophysiological mechanism of symptomatic hemorrhage transformation involves core factors such as blood-brain barrier injury, inflammatory response, oxidative stress, etc. The main signaling pathways include Wnt/β-catenin, toll-like receptor(TLR)/toll-like interleukin 1 receptor(TRAF)/nuclear factor-κB(NF-κB), RhoA/ROCK and transforming growth factor β (TGF-β)-Smad3. They affect the integrity and stability of the blood-brain barrier through different pathways, thereby regulating the risk of bleeding transformation. This review focuses on the pathophysiological mechanism, biomarker related risk factors and imaging factors of hemorrhage transformation after reperfusion therapy in acute ischemic stroke.
6.Research progress on the predictive value of inflammatory markers for early neurological deterioration after reperfusion in acute ischemic stroke
Journal of Chinese Physician 2025;27(10):1597-1600
Acute ischemic stroke (AIS) is the main subtype of stroke, caused by impaired blood supply to the brain. Timely restoration of blood perfusion is crucial for improving prognosis. A growing number of studies have shown that inflammatory markers and blood biomarkers, such as C-reactive protein (CRP), lymphocyte-to-monocyte ratio (LMR), monocyte-to-high-density lipoprotein ratio (MHR), and systemic immune-inflammation index (SII), have predictive effects on the prognosis of intravenous thrombolysis (IVT) in ischemic stroke. This article summarizes the research progress of inflammatory markers related to the prognosis of IVT in AIS, aiming to early identify adverse prognosis (such as early neurological deterioration, END) in patients undergoing IVT, conduct risk stratification for patients, formulate precise and effective treatment plans, and reduce related complications.
7.Potential profile analysis and influencing factors of self-management in patients with sudden deafness
Jing LIU ; Nuo ZHAO ; Zhihong LI ; Yi SU ; Caixia DU ; Dayong WANG
Journal of Audiology and Speech Pathology 2025;33(5):438-443
Objective To investigate the potential profile of self-management behavior in patients with sudden deafness,the characteristics and influencing factors of different categories of patients,and provide reference for clin-ical management.Methods A total of 205 patients with sudden deafness who were hospitalized in the Department of Otology of a Grade 3 hospital in Beijing were selected by convenience sampling method from August 2023 to June 2024.Date were collected using the general situation questionnaire,self-management status assessment scale for sudden deafness patient and social support rating scale.Mplus 8.0 was used for potential profile analysis,and SPSS 26.0 was used for single factor analysis and multiple logistic regression analysis.Results A total of 200 valid ques-tionnaires were collected.Patients were divided into 3 categories according to their self-management level,which were respectively named as"high management—good self-efficacy group"(n=52,26.00%),"moderate manage-ment—symptoms of special concern group"(n=101,50.50%),and"low management-lack of information acquisi-tion group"(n=47,23.50%).Multiple logistic regression analysis showed that education level,sleep disorder and social support level were the influencing factors of different self-management categories in patients with sudden deaf-ness.Conclusion The overall self-management ability of patients with sudden deafness is at a moderate level and with significant heterogeneity.Education level,sleep disorders,and social support serve as stratification criteria for categorizing different patient groups and formulating corresponding intervention strategies.Priority should be given to providing information support to the"low-management group with information deficiency",implementing targe-ted interventions for the"moderate-management group with symptom focus",and fully leveraging the self-efficacy of the"high-management group with good self-efficacy"to regulate their self-management level.
8.Mechanisms of polysaccharides from dendrobium officinale improving neurological function and sleep in ischemic stroke rats
Chunhua LI ; Dingsheng MO ; Kaimin ZENG ; Jingjing PENG ; Zhihong ZHAO
Chinese Journal of Neuroanatomy 2025;41(3):305-313
Objective:To investigate the effects and mechanisms of dendrobium officinale polysaccharides(DOP)on neural function and sleep in a rat model of ischemic stroke.Methods:Rats with ischemic stroke were modeled using middle cerebral artery occlusion(MCAO).The neurological function was assessed using the Longa scale.Sleep was monitored by electroencephalography.The hippocampal tissue damage was evaluated by TTC staining,HE staining,Nissl staining and TUNEL staining.The kits were used to detect reactive oxygen species(ROS),malondialdehyde(MDA),interleukin-6(IL-6),tumor necrosis factor-α(TNF-α),IL-1β,and IL-18 in the hippocampal tissue.West-ern blot analysis was conducted to detect the expression of microtubule-associated protein light chain 3(LC3)and Bec-lin1,NLRP3,apoptosis-associated speck-like protein containing a caspase recruitment domain(ASC),cleaved caspase-1(C-caspase-1),GSDMD-N-terminal domain(GSDMD-N),nuclear factor erythroid 2-related factor 2(Nrf2),and heme oxygenase-1(HO-1)in the hippocampal tissue.Results:DOP can improve sleep quality and neurological func-tion in rats with ischemic stroke,alleviate hippocampal tissue damage,inhibit oxidative stress and inflammation in the hippocampus,decrease the expression of Beclin1,NLRP3,ASC,C-caspase-1,GSDMD-N,cytosolic Nrf2 protein,and the LC3-Ⅱ/LC3-Ⅰ ratio in the hippocampus,while increasing the expression of HO-1 and nuclear Nrf2 protein.The Nrf2 inhibitor ML385 partially reversed the ameliorative effects of DOP.Conclusion:DOP may improve neurological function and sleep in rats with ischemic stroke by inhibiting autophagy and NLRP3 inflammasome-mediated pyroptosis through the activation of the Nrf2/HO-1 pathway,thereby alleviating oxidative stress and neuroinflammation.
9.Research progress of hemorrhagic transformation after reperfusion therapy for acute ischemic stroke
Journal of Chinese Physician 2025;27(3):472-477
Reperfusion therapy is the most critical treatment for acute ischemic stroke. However, reperfusion treaty-related hemorrhagic transformation is a potential serious complication, which increases the disability rate and fatality rate of patients. The pathophysiological mechanism of symptomatic hemorrhage transformation involves core factors such as blood-brain barrier injury, inflammatory response, oxidative stress, etc. The main signaling pathways include Wnt/β-catenin, toll-like receptor(TLR)/toll-like interleukin 1 receptor(TRAF)/nuclear factor-κB(NF-κB), RhoA/ROCK and transforming growth factor β (TGF-β)-Smad3. They affect the integrity and stability of the blood-brain barrier through different pathways, thereby regulating the risk of bleeding transformation. This review focuses on the pathophysiological mechanism, biomarker related risk factors and imaging factors of hemorrhage transformation after reperfusion therapy in acute ischemic stroke.
10.Research progress on the predictive value of inflammatory markers for early neurological deterioration after reperfusion in acute ischemic stroke
Journal of Chinese Physician 2025;27(10):1597-1600
Acute ischemic stroke (AIS) is the main subtype of stroke, caused by impaired blood supply to the brain. Timely restoration of blood perfusion is crucial for improving prognosis. A growing number of studies have shown that inflammatory markers and blood biomarkers, such as C-reactive protein (CRP), lymphocyte-to-monocyte ratio (LMR), monocyte-to-high-density lipoprotein ratio (MHR), and systemic immune-inflammation index (SII), have predictive effects on the prognosis of intravenous thrombolysis (IVT) in ischemic stroke. This article summarizes the research progress of inflammatory markers related to the prognosis of IVT in AIS, aiming to early identify adverse prognosis (such as early neurological deterioration, END) in patients undergoing IVT, conduct risk stratification for patients, formulate precise and effective treatment plans, and reduce related complications.

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