1.Prediction Research on the Potential Suitable Habitats of Ranunculus ternatus Thunb.Based on Optimized Maximum Entropy Model and Geographical Detector
Yingjun WANG ; Yanwu LIAO ; Shun LIU ; Mingming QIU
Chinese Journal of Information on Traditional Chinese Medicine 2025;32(8):7-13
Objective To explore the key environmental factors influencing the distribution and spatially stratified heterogeneity of the suitable habitats of Ranunculus ternatus Thunb.;To predict its potential suitable habitats within China;To provide theoretical guidance for the conservation of its wild resources,artificial introduction and cultivation,and production planning.Methods Based on the MaxEnt model,a distribution prediction model was established using 148 selected species distribution information and 28 environmental factor data.The ENMeval package in R language was used to optimize the model parameters.Quantitative analysis(q-value ranking)of environmental factors affecting spatial differentiation in potential suitable areas using geographic detector factor detection and interaction detection.Results After optimization,the accuracy of model was improved and the degree of overfitting was reduced.The average value of the area under the curve(AUC)was 0.940.The contribution rate of environmental factors and the jackknife test showed that the key environmental factors influencing the distribution of Ranunculus ternatus Thunb.mainly included the precipitation in March,the precipitation in November,elevation,the solar radiation intensity in October,the solar radiation intensity in December,and the average temperature in January.The results of raster calculation showed that the area of highly suitable habitats of Ranunculus ternatus Thunb.was approximately 4.105×104 km2,the area of moderately suitable habitats was approximately 4.243×105 km2,and the area of lowly suitable habitats was approximately 6.385×105 km2,accounting for about 3.8%,38.4%and 57.8%of the total area of suitable habitats,respectively.Conclusion This study can provide a basis for the conservation and sustainabele utilization of the wild resources of Ranunculus ternatus Thunb.
2.Prediction of cumulative live birth rate in in vitro fertilization using multi-model machine learning algorithms
Peng XING ; Hui LIANG ; Ying CHEN ; Ting LIU ; Jiawei ZHAI ; Bo YUAN ; Yingjun TIAN
Chinese Journal of Reproduction and Contraception 2025;45(4):358-364
Objective:To develop and validate machine learning models for predicting the cumulative live birth rate (CLBR) following in vitro fertilization (IVF) and to analyze key predictive features using SHAP values. Methods:This retrospective study included data from patients who underwent IVF-embryo transfer at the Department of Reproductive Medicine, Baoding Maternal and Child Health Hospital, between January 2017 and December 2022. Patients were categorized into two groups based on live birth outcome: the live birth group ( n=1 036) and the non-live birth group ( n=756). The dataset was randomly divided into a training set and a validation set in a ratio of 7∶3. Five algorithms were utilized for model development: logistic regression, random forest, extreme gradient boosting (XGBoost), support vector machine, and neural networks. Model performance was assessed using the area under the receiver operating characteristic (AUC) curve, F1 score, and calibration curves. Clinical decision curve analysis (DCA) was employed to evaluate the clinical utility of the models. SHAP values were used to interpret feature importance in the XGBoost model and enhance its explainability. Results:The XGBoost model demonstrated the best performance in predicting CLBR,with accuracy of 72.44%, AUC of 0.775, and F1 score of 0.654, accuracy and F1 score outperforming logistic regression (accuracy was 70.02%, F1 score was 0.585), random forest (accuracy was 71.69%, F1 score was 0.606), support vector machine (accuracy was 70.20%, F1 score was 0.607), and neural network (accuracy was 68.72%, F1 score was 0.560). The calibration curve of XGBoost closely aligned with the diagonal line, indicating that the predicted probabilities were very close to the actual outcomes, demonstrating good calibration. DCA indicated that the XGBoost model provided higher net benefits across a wide range of clinical decision thresholds. SHAP value analysis identified number of previous IVF failures, antral follicle count, anti-Müllerian hormone level, percentage of normal sperm morphology, and sperm DNA fragmentation index as key predictors of CLBR.Conclusion:The XGBoost model exhibits excellent predictive performance and calibration for CLBR, with SHAP values providing important insights into feature importance. This model has the potential to support the development of personalized treatment strategies in clinical practice. However, its generalizability needs to be validated using external datasets to ensure its applicability to diverse populations.
3.Comparative clinical characteristics and inflammatory biomarker analysis in infants with acute wheezing induced by respiratory syncytial virus versus human rhinovirus infection
Xiaofeng YU ; Huashu LIU ; Lili LEI ; Gang LUO ; Yingjun XU
The Journal of Practical Medicine 2025;41(15):2355-2361
Objective To analyze the clinical characteristics and explore the potential mechanisms under-lying acute wheezing associated with respiratory syncytial virus(RSV)and human rhinovirus(HRV)infections in infants.Methods A retrospective analysis was conducted on 560 infants who consecutively presented to the emer-gency department of Qingdao University Affiliated Women and Children's Hospital between January 2022 and December 2024 with acute exacerbation of wheezing caused by RSV and/or HRV infection;these infants constituted the infection group.A control group of 120 healthy infants who underwent routine physical examinations at the same hospital during the same period was also included.Multiplex PCR amplification sequencing technology was employed to detect respiratory pathogens via nucleic acid analysis.The infection group was further classified into the RSV-only group(n=248),the HRV-only group(n=186),and the co-infection group(HRV+RSV,n=126).One-way analysis of variance(ANOVA)was used to compare body mass index(BMI),peripheral blood white blood cell(WBC)count,neutrophil count,lymphocyte count,C-reactive protein(CRP)levels,and concentrations of interleukin(IL)-1β,IL-6,Toll-like receptor 4(TLR4),NOD-like receptor protein 3(NLRP3)inflamma-some,and matrix metalloproteinase-9(MMP-9)across the groups.Additionally,comparisons were made regarding gender distribution,severity of wheezing,history of wheezing,history of eczema,parental allergic history,oxygen supplementation requirements,and presence of concurrent pulmonary infection among the infected infants.Based on wheezing severity,the infection group was further divided into a severe wheezing group and a mild wheezing group.Clinical characteristics and biological indicators were analyzed and compared between these two groups to identify potential independent risk factors.Pearson correlation analysis was performed to evaluate the association between peripheral blood levels of IL-6,NLRP3,and MMP-9 and the severity of acute wheezing exacerbation in children.Results A one-way ANOVA indicated statistically significant differences in WBC count,neutrophil count,CRP,IL-1β,IL-6,TLR4,NLRP3,and MMP-9 levels across the study groups(all P<0.001).Both the RSV and co-infection groups demonstrated significantly higher rates of severe wheezing,oxygen requirement,and prolonged wheezing duration compared to the HRV group(all P<0.05).Among these,the co-infection group exhibited the highest oxygen requirement rate,although the duration of wheezing was shorter than that observed in the RSV group(P<0.05).The incidence of concurrent pulmonary infection was significantly greater in the RSV group compared to the HRV group(P<0.05).Additionally,the proportion of infants with a prior history of wheez-ing was significantly higher in the RSV group than in both the HRV and co-infection groups(P<0.05).Both the RSV and co-infection groups showed a significantly higher prevalence of eczema history among infants compared to the HRV group(P<0.05).Moreover,the co-infection group had a significantly higher proportion of parental allergic history compared with both the RSV and HRV groups(P<0.05).Clinical data analysis stratified by wheezing severity revealed that RSV was the most commonly detected virus among the enrolled infants,particularly in those presenting with severe wheezing(χ2=3.940,P=0.002).The severe wheezing group exhibited significantly higher rates of prior wheezing,history of eczema,parental allergy,need for oxygen supplementation,and concurrent pulmonary infections compared to the mild wheezing group(P<0.001).Furthermore,the duration of wheezing was significantly prolonged in the severe group relative to the mild group(t=2.058,P=0.040).Levels of IL-6,NLRP3,and MMP-9 were also significantly elevated in the severe wheezing group(P<0.05).Multivariate logistic regression analysis revealed that RSV infection,along with elevated levels of IL-6,NLRP3,and MMP-9,were independent risk factors associated with severe wheezing(OR=3.217,1.023,1.022,and 1.056,respectively;all P<0.05).In children with RSV/HRV infection,the severity of acute wheezing demonstrated a positive correlation with NLRP3 and MMP-9 levels(P<0.05).The Pearson correlation coefficient between NLRP3 and MMP-9 was r=0.238(P<0.001),indicating a weak yet statistically significant positive relationship.Conclusions RSV may provoke more severe respiratory inflammatory responses and clinical manifestations compared to HRV.Individuals with a genetic predisposition to allergies or a pre-existing history of respiratory conditions may experience height-ened severity of wheezing following viral infection.The NLRP3 inflammasome may further intensify airway inflam-mation and remodeling through the promotion of MMP-9 release.These mechanisms may collectively contribute to the pathogenesis of acute wheezing episodes and subsequently influence the progression of respiratory diseases.
4.Study on Ecological Suitability Distribution of Pulsatilla chinensis(Bge.)Regel Based on MaxEnt Model and GIS
Yingying WU ; Yingjun WANG ; Yanwu LIAO ; Shun LIU
Chinese Journal of Information on Traditional Chinese Medicine 2025;32(1):12-17
Objective To explore the environmental factors influencing the distribution of Pulsatilla chinensis(Bge.)Regel and to predict its potential habitat in China;To provide reference for the assessment of its wild resources and the introduction of its cultivation.Methods Totally 230 pieces of information on the distribution of sample sites were collected.Combined with data of 48 environmental factors,MaxEnt model and ArcGIS 10.8 software were used to select the dominant environmental factors that affect their distribution,and visual analysis of potential suitable areas was conducted.Results The prediction accuracy of the established model met the requirements(AUC>0.9).The main environmental factors affecting the distribution of Pulsatilla chinensis(Bge.)Regel were the precipitation in the wettest season,the average temperature in November,the altitude,the standard deviation of the seasonal variation of temperature,the precipitation in May and the average temperature in August,with a cumulative contribution rate of 84.3%.The prediction results showed that it was mainly distributed in the North China and Northeast China,with a total suitability zone of about 2 382 461.60 km2,of which the low suitability zone was about 1 263 497.00 km2,the medium suitability zone was about 582 879.20 km2,and the high suitability zone was about 536 085.40 km2,accounting for approximately 53.03%,24.47%and 22.50%of the total suitability zone.Conclusion The results of the model are consistent with the literature records,which can provide theoretical reference for the sustainable utilization of Pulsatilla chinensis(Bge.)Regel.resources.
5.Prediction Research on the Potential Suitable Habitats of Ranunculus ternatus Thunb.Based on Optimized Maximum Entropy Model and Geographical Detector
Yingjun WANG ; Yanwu LIAO ; Shun LIU ; Mingming QIU
Chinese Journal of Information on Traditional Chinese Medicine 2025;32(8):7-13
Objective To explore the key environmental factors influencing the distribution and spatially stratified heterogeneity of the suitable habitats of Ranunculus ternatus Thunb.;To predict its potential suitable habitats within China;To provide theoretical guidance for the conservation of its wild resources,artificial introduction and cultivation,and production planning.Methods Based on the MaxEnt model,a distribution prediction model was established using 148 selected species distribution information and 28 environmental factor data.The ENMeval package in R language was used to optimize the model parameters.Quantitative analysis(q-value ranking)of environmental factors affecting spatial differentiation in potential suitable areas using geographic detector factor detection and interaction detection.Results After optimization,the accuracy of model was improved and the degree of overfitting was reduced.The average value of the area under the curve(AUC)was 0.940.The contribution rate of environmental factors and the jackknife test showed that the key environmental factors influencing the distribution of Ranunculus ternatus Thunb.mainly included the precipitation in March,the precipitation in November,elevation,the solar radiation intensity in October,the solar radiation intensity in December,and the average temperature in January.The results of raster calculation showed that the area of highly suitable habitats of Ranunculus ternatus Thunb.was approximately 4.105×104 km2,the area of moderately suitable habitats was approximately 4.243×105 km2,and the area of lowly suitable habitats was approximately 6.385×105 km2,accounting for about 3.8%,38.4%and 57.8%of the total area of suitable habitats,respectively.Conclusion This study can provide a basis for the conservation and sustainabele utilization of the wild resources of Ranunculus ternatus Thunb.
6.Study on Ecological Suitability Distribution of Pulsatilla chinensis(Bge.)Regel Based on MaxEnt Model and GIS
Yingying WU ; Yingjun WANG ; Yanwu LIAO ; Shun LIU
Chinese Journal of Information on Traditional Chinese Medicine 2025;32(1):12-17
Objective To explore the environmental factors influencing the distribution of Pulsatilla chinensis(Bge.)Regel and to predict its potential habitat in China;To provide reference for the assessment of its wild resources and the introduction of its cultivation.Methods Totally 230 pieces of information on the distribution of sample sites were collected.Combined with data of 48 environmental factors,MaxEnt model and ArcGIS 10.8 software were used to select the dominant environmental factors that affect their distribution,and visual analysis of potential suitable areas was conducted.Results The prediction accuracy of the established model met the requirements(AUC>0.9).The main environmental factors affecting the distribution of Pulsatilla chinensis(Bge.)Regel were the precipitation in the wettest season,the average temperature in November,the altitude,the standard deviation of the seasonal variation of temperature,the precipitation in May and the average temperature in August,with a cumulative contribution rate of 84.3%.The prediction results showed that it was mainly distributed in the North China and Northeast China,with a total suitability zone of about 2 382 461.60 km2,of which the low suitability zone was about 1 263 497.00 km2,the medium suitability zone was about 582 879.20 km2,and the high suitability zone was about 536 085.40 km2,accounting for approximately 53.03%,24.47%and 22.50%of the total suitability zone.Conclusion The results of the model are consistent with the literature records,which can provide theoretical reference for the sustainable utilization of Pulsatilla chinensis(Bge.)Regel.resources.
7.Evaluation of the quality of Alpinia katsumadai from different habitats based on HPLC fingerprint and determina-tion of active ingredient content
Yanwu LIAO ; Yingjun WANG ; Shun LIU ; Mingming QIU ; Yufeng ZHU
China Pharmacy 2025;36(18):2262-2266
OBJECTIVE To evaluate the quality differences of Alpinia katsumadai from different habitats. METHODS High- performance liquid chromatography(HPLC) was used to establish the fingerprints of A. katsumadai from 18 batches of different habitats, and the quality of A. katsumadai from different habitats was comprehensively evaluated by similarity evaluation, cluster analysis (CA), principal component analysis (PCA), orthogonal partial least squares-discriminant analysis (OPLS-DA) and the content determination results of alpinetin, pinocembrin, cardamonin and alnustone in A. katsumadai. RESULTS The similarity of HPLC fingerprints for 18 batches of A. katsumadai was >0.9. Eleven common peaks were identified from the chromatogram, and four of them were specifically characterized. Both CA and PCA grouped 18 batches of A. katsumadai into 3 categories, extracting 2 principal components (the cumulative variance contribution rate reached 89.798%). OPLS-DA identified 9 quality difference markers, namely the components corresponding to peaks 4, 9, 3, 2, 7 (pinocembrin), 8 (cardamonin), 6 (alpinetin), 10 and 11 (alnustone). The content of alpinetin, pinocembrin, cardamonin, and alnustone ranged from 4.507 1-11.579 7, 5.154 4-14.183 3, 5.109 5-13.588 3 and 4.494 6-11.277 2 mg/g, respectively. CONCLUSIONS The quality of A. katsumadai from different habitats is quite different, and the quality of A. katsumadai from Hainan is the best.
8.Anti-SARS-CoV-2 prodrug ATV006 has broad-spectrum antiviral activity against human and animal coronaviruses.
Tiefeng XU ; Kun LI ; Siyao HUANG ; Konstantin I IVANOV ; Sidi YANG ; Yanxi JI ; Hanwei ZHANG ; Wenbin WU ; Ye HE ; Qiang ZENG ; Feng CONG ; Qifan ZHOU ; Yingjun LI ; Jian PAN ; Jincun ZHAO ; Chunmei LI ; Xumu ZHANG ; Liu CAO ; Deyin GUO
Acta Pharmaceutica Sinica B 2025;15(5):2498-2510
Coronavirus-related diseases pose a significant challenge to the global health system. Given the diversity of coronaviruses and the unpredictable nature of disease outbreaks, the traditional "one bug, one drug" paradigm struggles to address the growing number of emerging crises. Therefore, there is an urgent need for therapeutic agents with broad-spectrum anti-coronavirus activity. Here, we provide evidence that ATV006, an anti-SARS-CoV-2 nucleoside analog targeting RNA-dependent RNA polymerase (RdRp), has broad antiviral activity against human and animal coronaviruses. Using mouse hepatitis virus (MHV) and human coronavirus NL63 (HCoV-NL63) as a model, we show that ATV006 has potent prophylactic and therapeutic activity against murine coronavirus infection in vivo. Remarkably, ATV006 successfully inhibits viral replication in mice even when administered 96 h after infection. Due to its oral bioavailability and potency against multiple coronaviruses, ATV006 has the potential to become a useful antiviral agent against SARS-CoV-2 and other circulating and emerging coronaviruses in humans and animals.
9.Mechanism of Huayu jiedu formula in alleviating inflammatory injury in chronic kidney disease based on AIM2 pyroptosis pathway
Jinhuan XUE ; Ziwen WU ; Fan YANG ; Yunyun LOU ; Yingjun DING ; Yupeng XIAO ; Xianhui LIU ; Wenjie LIANG
China Pharmacy 2025;36(21):2638-2644
OBJECTIVE To explore the mechanism of Huayu jiedu formula in regulating inflammatory injury in chronic kidney disease (CKD). METHODS Fifty male SD rats were randomly divided into a sham surgery group (10 rats) and a modeling group (40 rats). The CKD model was replicated in the modeling group by unilateral ureteral obstruction surgery. After successful modeling, the rats were randomly divided into model group, esaxerenone group (positive control), and TCM low- and high-dose groups, with 10 rats in each group. The Esaxerenone group was given 1 mg/kg of esaxerenone, while the TCM low- and high-dose groups were given 13.7 and 27.4 g/kg of Huayu jiedu formula respectively, the sham surgery group and model group were given an equal volume of physiological saline, all groups were intervened continuously for 14 days. Hematoxylin eosin and Masson staining were used to observe the pathological changes in rat kidney tissue. Conventional biochemical methods were used to detect serum urea (SUr), serum creatinine (SCr), malondialdehyde (MDA), and superoxide dismutase (SOD) levels; enzyme-linked immunosorbent assay was used to detect the levels of serum interleukin-1β (IL-1β), IL-6, and tumor necrosis factor-α(TNF-α); immunohistochemistry and Western blot were used to detect the protein expression of peroxisome proliferator-activated receptor γ coactivator-1α(PGC-1α) , mitochondrial transcription factor A (TFAM), absent in melanoma 2(AIM2), caspase-1, gasdermin D (GSDMD), IL-1β and IL-18 in renal tissue; real-time fluorescence quantitative PCR was used to detect the mRNA expression of AIM2. RESULTS Compared with the sham surgery group, the renal tissue of the model group showed pathological changes such as glomerular deformation and destruction, severe tubular dilation, and increased deposition of blue fibrin; the levels of SUr, SCr, MDA, IL-1β, IL-6, TNF-α,the protein expression of AIM2, GSDMD, caspase-1, IL-1β, IL-18 , and the mRNA expression of AIM2 were significantly increased or up-regulated (P<0.01); the levels of SOD, the protein expression of PGC-1α, TFAM were significantly reduced or down-regulated (P<0.01). Compared with the model group, all treatment groups showed improvement in the above symptoms and most indicators in rats. CONCLUSIONS Huayu jiedu formula may improve renal function, alleviate renal inflammatory damage and pyroptosis, and exert renal protective effects by regulating the AIM2 pyroptosis pathway.
10.Risk factors for positive post-transplantation measurable residual disease in patients with acute lymphoblastic leukemia.
Yuewen WANG ; Guomei FU ; Lanping XU ; Yu WANG ; Yifei CHENG ; Yuanyuan ZHANG ; Xiaohui ZHANG ; Yanrong LIU ; Kaiyan LIU ; Xiaojun HUANG ; Yingjun CHANG
Chinese Medical Journal 2025;138(9):1084-1093
BACKGROUND:
The level of measurable residual disease (MRD) before and after transplantation is related to inferior transplant outcomes, and post-hematopoietic stem cell transplantation measurable residual disease (post-HSCT MRD) has higher prognostic value in determining risk than pre-hematopoietic stem cell transplantation measurable residual disease (pre-HSCT MRD). However, only a few work has been devoted to the risk factors for positive post-HSCT MRD in patients with acute lymphoblastic leukemia (ALL). This study evaluated the risk factors for post-HSCT MRD positivity in patients with ALL who underwent allogeneic hematopoietic stem cell transplantation (allo-HSCT).
METHODS:
A total of 1683 ALL patients from Peking University People's Hospital between January 2009 and December 2019 were enrolled to evaluate the cumulative incidence of post-HSCT MRD. Cox proportional hazard regression models were built for time-to-event outcomes. Multivariable analysis was performed to determine independent influencing factors from the univariable analysis.
RESULTS:
Both in total patients and in T-cell ALL or B-cell ALL, pediatric or adult, human leukocyte antigen-matched sibling donor transplantation or haploidentical SCT subgroups, positive pre-HSCT MRD was a risk factor for post-HSCT MRD positivity ( P <0.001 for all). Disease status (complete remission 1 [CR1] vs . ≥CR2) was also a risk factor for post-HSCT MRD positivity in all patients and in the B cell-ALL, pediatric, or haploidentical SCT subgroups ( P = 0.027; P = 0.003; P = 0.035; P = 0.003, respectively). A risk score for post-HSCT MRD positivity was developed using the variables pre-HSCT MRD and disease status. The cumulative incidence of post-HSCT MRD positivity was 12.3%, 25.1%, and 38.8% for subjects with scores of 0, 1, and 2-3, respectively ( P <0.001). Multivariable analysis confirmed the association of the risk score with the cumulative incidence of post-HSCT MRD positivity and relapse as well as leukemia-free survival and overall survival.
CONCLUSION
Our results indicated that positive pre-MRD and disease status were two independent risk factors for post-HSCT MRD positivity in patients with ALL who underwent allo-HSCT.
Humans
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Precursor Cell Lymphoblastic Leukemia-Lymphoma/pathology*
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Neoplasm, Residual
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Hematopoietic Stem Cell Transplantation/methods*
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Male
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Female
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Risk Factors
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Adolescent
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Adult
;
Child
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Child, Preschool
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Young Adult
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Middle Aged
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Infant
;
Transplantation, Homologous
;
Proportional Hazards Models
;
Retrospective Studies

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