1.Characterization of viral etiology among patients with respiratory infections in Yancheng city
Xiongying SUN ; Rundong ZHU ; Jiebo XIA ; Sheng ZHANG ; Jian SUN ; Yuanyuan SUN ; Juan SONG ; Jun HAN
Chinese Journal of Experimental and Clinical Virology 2025;39(5):592-597
Objective To evaluate the viral composition in respiratory samples from hospitalized children with acute respiratory infections in Yancheng,Jiangsu province,between January 2024 and June 2025 using metagenomic next-generation sequencing(mNGS).Methods:A total of 247 respiratory specimens,including throat swabs,sputum,and bronchoalveolar lavage fluid,were collected from 247 hospitalized children in Yancheng,Jiangsu province,during the study period. The viral composition in these samples was detected and analyzed using mNGS technology.Results:Among the 247 cases,there were 136 cases of pneumonia(including 4 cases of severe pneumonia),45 cases of bronchopneumonia,27 cases of upper respiratory tract infection,and 39 cases of bronchitis. The ages of the patients ranged from 41 days to 14 years,with a median age of 3 years. High-throughput sequencing results showed that the positive detection rate for viruses in the respiratory samples was 89.88%(222/247),The detection rate of viruses causing respiratory tract infections was 69.23%(171/247),With RNA viruses detected in 71.65%(177/247)of the cases and DNA viruses in 43.32%(107/247). The top three viruses detected were rhinovirus(24.29%,60/247),human herpesvirus 7(HHV-7)(21.86%,54/247),and influenza A H1N1(20.24%,50/247). The common detected viruses that cause respiratory infections are rhinovirus(24.29%),influenza A virus H1N1(20.24%),RSV(17.81%),metapneumovirus(10.53%),enterovirus(6.88%),parainfluenza virus(6.07%),bocavirus(6.07%),coronavirus(2.43%),and adenovirus(2.43%). In children with pneumonia,the top two respiratory viruses detected were rhinovirus(19.85%,27/136)and influenza A H1N1(16.91%,23/136). In children with bronchopneumonia,the main viruses detected were rhinovirus(31.11%,14/45)and respiratory syncytial virus(24.44%,11/45). In children with upper respiratory tract infections,the main viruses detected were influenza A H1N1(33.33%,9/27)and rhinovirus(25.93%,7/27). In children with bronchitis,the main viruses detected were rhinovirus(30.77%,12/39)and respiratory syncytial virus(25.64%,10/39). Among the 4 cases of severe pneumonia,the viruses detected were influenza A H1N1(2/4),respiratory syncytial virus(1/4),and bocavirus(1/4).Conclusion:mNGS analysis revealed a high positive detection rate of respiratory viruses(89.88%)in hospitalized children with acute respiratory infections in Yancheng,Jiangsu,from January 2024 to June 2025,with influenza A H1N1 and rhinovirus being the most predominant.
2.Characterization of viral etiology among patients with respiratory infections in Yancheng city
Xiongying SUN ; Rundong ZHU ; Jiebo XIA ; Sheng ZHANG ; Jian SUN ; Yuanyuan SUN ; Juan SONG ; Jun HAN
Chinese Journal of Experimental and Clinical Virology 2025;39(5):592-597
Objective To evaluate the viral composition in respiratory samples from hospitalized children with acute respiratory infections in Yancheng,Jiangsu province,between January 2024 and June 2025 using metagenomic next-generation sequencing(mNGS).Methods:A total of 247 respiratory specimens,including throat swabs,sputum,and bronchoalveolar lavage fluid,were collected from 247 hospitalized children in Yancheng,Jiangsu province,during the study period. The viral composition in these samples was detected and analyzed using mNGS technology.Results:Among the 247 cases,there were 136 cases of pneumonia(including 4 cases of severe pneumonia),45 cases of bronchopneumonia,27 cases of upper respiratory tract infection,and 39 cases of bronchitis. The ages of the patients ranged from 41 days to 14 years,with a median age of 3 years. High-throughput sequencing results showed that the positive detection rate for viruses in the respiratory samples was 89.88%(222/247),The detection rate of viruses causing respiratory tract infections was 69.23%(171/247),With RNA viruses detected in 71.65%(177/247)of the cases and DNA viruses in 43.32%(107/247). The top three viruses detected were rhinovirus(24.29%,60/247),human herpesvirus 7(HHV-7)(21.86%,54/247),and influenza A H1N1(20.24%,50/247). The common detected viruses that cause respiratory infections are rhinovirus(24.29%),influenza A virus H1N1(20.24%),RSV(17.81%),metapneumovirus(10.53%),enterovirus(6.88%),parainfluenza virus(6.07%),bocavirus(6.07%),coronavirus(2.43%),and adenovirus(2.43%). In children with pneumonia,the top two respiratory viruses detected were rhinovirus(19.85%,27/136)and influenza A H1N1(16.91%,23/136). In children with bronchopneumonia,the main viruses detected were rhinovirus(31.11%,14/45)and respiratory syncytial virus(24.44%,11/45). In children with upper respiratory tract infections,the main viruses detected were influenza A H1N1(33.33%,9/27)and rhinovirus(25.93%,7/27). In children with bronchitis,the main viruses detected were rhinovirus(30.77%,12/39)and respiratory syncytial virus(25.64%,10/39). Among the 4 cases of severe pneumonia,the viruses detected were influenza A H1N1(2/4),respiratory syncytial virus(1/4),and bocavirus(1/4).Conclusion:mNGS analysis revealed a high positive detection rate of respiratory viruses(89.88%)in hospitalized children with acute respiratory infections in Yancheng,Jiangsu,from January 2024 to June 2025,with influenza A H1N1 and rhinovirus being the most predominant.
3.Molecular characteristics of HA1 and NA genes of influenza A (H3N2) virus in Yancheng city from 2022 to 2024
Chunxiang LI ; Xiongying SUN ; Min YANG ; Peng SHEN ; Jiajing YUAN ; Min ZHANG ; Chen CHEN ; Changcheng LI ; Guoqing CHEN
Chinese Journal of Experimental and Clinical Virology 2024;38(4):446-453
Objective:To analyze the molecular evolutional characteristics of the hemagglutinin and neuraminidase genes of influenza A (H3N2) viruses isolated in Yancheng from 2022 to 2024.Methods:The throat swab specimens of influenza-like illness ( ILI) from sentinel surveillance hospital and outbreak sites were detected using the method of real time Rt-qPCR. The influenza A(H3N2) viruses were isolated using MDCK cells culture method from April 2022 to Marh 2024. The strains isolated from 2022 to 2024 were selected randomly and their sequences of the HA1 and NA genes were amplified through one step RT-PCR method and the PCR products were sequenced.The nucleotide and amino acid site variations and evolutionary characteristics of the genes were analyzed using relevant bioinformatics software. The mutations of genes and nucleic acid locus were analyzed and the evolutional trees were generated using bioinformatics software.Results:A total of 5 020 samples were collected between April 2022 and March 2024, the positive detection rate of influenza virus nucleic acid was 18.59%(933/5 020).The winter and spring influenza peaks were obvious in the two monitoring seasons from April 2022 to March 2024. Among them, the summer influenza peak was obvious in the monitoring season from April 2022 to March 2023, and the H3N2 subtype influenza virus was the dominant epidemic strain in the two monitoring seasons. Genetic evolution tree displayed: the clustering relationships of the respective branches of HA1 and NA genes of 32 strains isolated in Yancheng were basically the same.The HA1 and NA genes of 24 strains isolated from 2023-2024 in Yancheng and the 2022-2024 Northern Hemisphere vaccine strain A/Darwin/9/2021 (H3N2) were located in the 3C.2a1b2a.2a.3a.1 evolutionary lineage, while the 8 strains isolated in the 2022 in Yancheng and the 2021-2022 Northern Hemisphere vaccine strain A/Cambodia/e0826360/2020 (H3N2) were located in the 3C.2a1b.2a.1a evolutionary lineage.The 6 strains (A/JSTH/11735/2023, A/JSTH/11788/2023, A/JSTH/11974/2023, A/JSYD/353/2023, A/JSYD/354/2023, A/JSTH/138/2023) all exhibited variations in the F79L, N122D, P239S, and K276E amino acid sites, which were present in both sporadic and outbreak strains. Because the strains of the antigen epitopes, receptor binding sites and glycosylation sites in the HA1 genes had a certain degree of variations in Yancheng in the 2022-2024 year, the immunogenicity matching between the 24 strains isolated in the 2023-2024 and the Northern Hemisphere vaccine strain A/Darwin/9/2021 was good, while the immunogenicity matching between the 8 strains isolated in the 2022 and the Northern Hemisphere vaccine strain A/Cambodia/e0826360/2022 was good; 32 strains isolated from 2022 to 2024 had no mutations in catalytic residues and drug resistant sites of NA genes.Conclusion:These result indicated that the HA1 and NA genes of influenza A/H3N2 viruses circulated in Yancheng city from 2022 to 2024 are changed gradually.The accumulation of these mutations would result in antigenic drift of influenza A(H3N2) viruses and increase the mismatching of the recommended vaccine strain.Compared with the vaccine strain A/Darwin/9/2021(H3N2), the strains isolated in the 2022 had substantially result in antigenic drift on the whole.The influenza A(H3N2) viruses surveillance should be strengthened to find the new mutant of virus in time.
4.Investigation on biological subtypes of depression based on diffusion tensor imaging
Xiongying CHEN ; Hua ZHU ; Hang WU ; Jian CHENG ; Jingjing ZHOU ; Yuan FENG ; Rui LIU ; Yun WANG ; Zhifang ZHANG ; Lei FENG ; Yuan ZHOU ; Gang WANG
Sichuan Mental Health 2023;36(4):294-300
BackgroundBeing complex and highly heterogeneous with regard to the etiology and clinical manifestations of depression, neuroimaging studies make a breakthrough for exploring the biological subtypes of depression, while the current data-driven approach for the identification of subtyping depression using structural magnetic resonance imaging (MRI) data is insufficient. ObjectiveTo explore the biological subtypes of depression using diffusion tensor imaging (DTI) and machine learning methods. MethodsA total of 127 patients with depression who attended Beijing Anding Hospital from September 2017 to August 2021 and met the Diagnostic and Statistical Manual of Mental Disorders, fourth edition (DSM-IV) diagnostic criteria were included, and another 80 healthy individuals matched for gender and age were recruited through advertisements in surrounding communities during the same period. DTI findings, demographic characteristics and clinical data were collected from all participants. Tract-based spatial statistics (TBSS) and the Johns Hopkins University (JHU) white matter probability maps were used to extract fractional anisotropy (FA) values of white matter tracts. A semi-supervised machine learning technique was used to identify the subtypes, and the FA values for whole brain white matter of patients and controls were compared. ResultsPatients with depression were classified into two biological subtypes. FA values in multiple tracts including corpus callosum and corona radiata of subtype I patients were smaller than those of healthy controls (P<0.01, FDR corrected), and FA values in middle cerebellar peduncle, left superior cerebellar peduncle and left cerebral peduncle of subtype II patients were larger than those of healthy controls (P<0.01, FDR-corrected). Baseline Hamilton Depression Scale-17 item (HAMD-17) score yielded no statistical difference between subtype I and subtype II patients (P>0.05), while subtype I patients scored lower on HAMD-17 than subtype II patients after 12 weeks of treatment (t=2.410, P<0.05). ConclusionDepression patients exhibit two biological subtypes with distinct patterns of white matter damage. Furthermore, the subtypes respond differently to the medication treatment. [Funded by the National Key Research and Development Program of China (number, 2016YFC1307200), the Scientific Research and Cultivation Program of Beijing Municipal Hospitals (number,PX2023066), Beijing Anding Hospital, Capital Medical University (number,YJ201904, YJ201911); www.chictr.org.cn number: ChiCTR-OOC-17012566]
5.Clinical application of metagenomics sequencing in children with acute bacterial meningitis
Xiongying YU ; Xiaoyan LI ; Zhaoshi YI ; Jian ZHA ; Xiaolan SUN ; Jingjing ZHANG ; Hui CHEN ; Zhixin HUANG ; Jianmin ZHONG
Chinese Journal of Applied Clinical Pediatrics 2021;36(13):1007-1010
Objective:To explore the application value of metagenomics sequencing in the etiological diagnosis of bacterial meningitis(BM) in children and improve the diagnosis and treatment effect of BM in children.Methods:All BM cases were collected from Jiangxi Provincial Children′s Hospital from February 1, 2018 to January 31, 2020.Meanwhile, such biological samples as blood and cerebrospinal fluid were collected for traditional etiological testing and metagenomics sequencing.The results of traditional etiological testing were regarded as the gold standard, and the specificity and sensitivity of metagenomics sequencing in the diagnosis of BM in children were confirmed.Results:A total of 45 cases were collected in this study, including 31 males and 14 females, with the age between (74.74 ± 58.67) months.Twenty-six cases were identified by metagenomics sequencing, with the positive rate being 57.78%.Among them, there were 8 cases of Streptococcus pneumoniae, 2 cases of Escherichia coli, 2 cases of Neisseria meningitidis, 2 cases of Staphylococcus, 2 cases of Salmonella, 2 cases of Mycobacterium multiplex, 1 case of Streptococcus intermedius, 1 case of Streptococcus pyogenes, 1 case of Streptococcus paris, 1 case of Streptococcus salivarius, 1 case of Haemophilus influenzae, 1 case of Pseudomonas aeruginosa, 1 case of Acinetobacter baumannii, and 1 case of Aspergillus.The traditional etiological positive rate was 17.78%, and the metagenomic next-generation sequencing (mNGS) positive rate was 57.78% ( P=0.014, kappa=0.273). As per the comparison results, the sensitivity, specificity, positive predictive value, negative predictive value, Youden index and misdiagnosis rate were 100.00%, 51.35%, 30.76%, 100.00%, 51.36%, 48.64% and 0, respectively. Conclusions:Metagenomics examination had high sensitivity, which can improve the etiological diagnosis rate of acute BM in children, especially in case of high clinical suspicion of infection.Therefore, metagenomics examination should be selected as early as possible when the etiology cannot be determined by traditional approaches.
6.Working memory span training improves working memory capacity
Liping WANG ; Yanuo XUN ; Yutao FENG ; Qiumei ZHANG ; Xiongying CHEN ; Wan ZHAO ; Jun LI
Chinese Journal of Behavioral Medicine and Brain Science 2021;30(8):728-733
Objective:To explore whether working memory span training can expand working memory capacity.Methods:A randomized controlled trial design was adopted and a total of 60 healthy college students were recruited and randomly divided into training group ( n=30, receiving adaptive training of spatial breadth task) and control group ( n=30, receiving non-adaptive training of low difficulty spatial breadth task). The cognitive behavior and event-related potential (ERP) data of all subjects when completing the change awareness task were collected before and after training.The SPSS 22.0 statistical software was used for data analysis. The differences between the training group and the control group before and after training were compared by repeated measurement analysis of variance. Results:Repeated measurement ANOVA showed that there were significant time and group interactions at the levels of cognitive behavior(K score, F=5.352, P=0.025) and ERP (CDA, F=4.644, P=0.037) levels. Further post test found that compared with pre-training (pre-test), the K-score ((0.51±0.93), (1.61±1.07), F=26.81, P<0.001) and CDA ((-1.49±1.07)μV, (-2.03±0.94)μV, F=4.731, P=0.041) of the training group increased significantly after training (post-test), and there was no significant difference in K-score and CDA of the control group before and after training (boh P>0.05). Conclusion:Working memory span task can be used as an effective training paradigm to improve working memory capacity.
7.Hepatitis E virus seroprevalence among blood donors in Liuzhou, China
Qiaomei LIU ; Li WANG ; Shengke WU ; Sufang ZHANG ; Yumao TANG ; Liuyan QIN ; Yanqiong LIU ; Xuefen SUN ; Xiongying LI
Chinese Journal of Blood Transfusion 2021;34(1):62-64
【Objective】 To investigate the hepatitis E virus(HEV) infection among voluntary blood donors in Liuzhou, Guangxi. 【Methods】 Qualified blood donations in Liuzhou from October to November 2019 were tested for anti-HEV IgG and IgM and.HEV antigen. HEV RNA test was performed on samples positive for HEV antigen and/or anti-HEV IgM. and the test results were analyzed statistically. 【Results】 The seroprevalence rates of HEV antigen and anti-HEV IgG and IgM among 5 751 qualified donations were 0, 26.03% (1497/5 751), and 1.67% (96/5 751), respectively.None of the 91 anti-HEV IgM positive samples was positive for HEV RNA, whereas 60.41% of anti-HEV IgM positive samples were anti-HEV IgG positive. The HEV antibody prevalence varied significantly by gender, age, and nationality (P<0.05). 【Conclusion】 The prevalence of anti-HEV IgG / IgM among blood donors in Liuzhou was higher than that in other domestic regions. Significant increase in HEV antibody prevalence was observed among ethnic minorities, such as Miao and Dong, and age group of more than 45 years.Follow-up studies with larger sample size could be conducted to estimate potential risks of HEV transmission by blood transfusion, which may provide references for selective screening of HEV infection marker among high-endemic population.
8.Clinical observation of rotavirus associated mild encephalopathy/encephalitis with reversible splenial lesion
Xiongying YU ; Xingying ZENG ; Zhaoshi YI ; Jian CHA ; Xiaoyan LI ; Jingjing ZHANG ; Jianmin ZHONG
Chinese Journal of Applied Clinical Pediatrics 2019;34(7):521-524
Objective To explore the clinical characteristics of rotavirus associated mild encephalopathy/encephalitis with reversible splenial lesion(RAMERS).Methods RAMERS cases were collected from December 2017 to January 2018 at the Department of Neurology,Jiangxi Children's Hospital.The clinical and electroencephalogram characteristics of 14 patients with RAMERS were retrospectively investigated.Data was analyzed by using SPSS 19.0 software.Results Fourteen cases of RAMERS were tested,9 males,and 5 females,with the average age of (27.00 ±6.45) months,and all cases suffered from the generalized tonic-clonic seizures,57.14% (8/14 cases) had cluster seizure (at lest 2 times/day),convulsions occurred (3.14 ± 1.29) days after gastroenteritis,and 64.29% (9/14 cases) had pathologic fever (38 ℃ or higher).The background of electroencephalogram(EEG) was characterized by nonspecific rhythmic slow waves in 10 cases (71.43 %,10/14 cases),normal in 3 cases (21.43 %,3/14 cases),and interictal EEG performed in 1 case(7.14%,1/14 cases) which was characterized by focal discharges of spikes in the forehead,central,and all of the EEG manifestations go back to normal after 2 weeks.Twelve patients' brain MRI showed solitary splenium of corpus callosum lesion,and two showed splenium of corpus callosum and bilateral symmetry white matter lesion.Conclusions RAMERS is a special type of reversible splenial lesion syndrome,which occurs predominantly in infants and young children.It is characterized by gastroenteritis,benign infantile convulsion,cluster seizure and nonspecific rhythmic slow waves in the background of EEG.Prognosis is usually excellent.Head MRI reexamination is not recommended as a routine procedure to avoid overtreatment.
9.Establishment of orthotopic colorectal cancer model by colonoscopy with submucosal injection in living mice
Zhengchun WU ; Lingxiang WANG ; Xiongying MIAO ; Zhulin YANG ; Kang CHEN ; Kunpeng WANG ; Wenhao CHEN ; Zijian ZHANG ; Kai DENG ; Junjiao HU ; Xibin YANG ; Yu WEN ; Li XIONG
International Journal of Biomedical Engineering 2018;41(3):250-256
Objective To set up a living mice colonoscopy platform to establish an orthotopic model of colorectal cancer in mice under direct vision,and to observe its biological behavior such as metastasis.Methods Eighteen-week-old male C57/BL mice were anesthetized,and the intestinal lumen of the mice was examined by a self-developed living mice colonoscopy and Olympus URF-P5 ureteroscopy,respectively.The imaging effects of the two methods were compared.Human colon cancer HT-29 cells were injected into the colonic mucosa of BALB/c-nu mice under direct vision.The colonoscopy was performed on the 3rd,7th and 15th day after the injection to observe the tumor formation in the intestinal lumen.The mice were sacrificed when the body weight decreased significantly or cachexia appeared,and then the abdominal cavity was examined including the tumor formation and metastasis.Results The self-developed living mice colonoscopy platform can provide clear vision of enteric cavity,and no mice died in the colonoscopy examination.In vivo subcutaneous injection of HT-29 cells in mice was performed with a perforation rate of 15%,a mortality rate of 33.3%,a tumor formation rate of 62.5%,an abdominal metastasis rate of 60%,a liver metastasis rate of 25%,and an abdominal wall transfer rate of 25%.Conclusion The self-developed mice colonoscopy platform can be used for the study of colorectum in living mice.The imaging effect is no less than that of Olympus URF-P5 ureteroscopy.In addition,an orthotopic colorectal cancer model can be established by this platform combing with submucosal injection technology.
10.Application of VL in combination with flipped classroom in teaching of virus infection diagnosis
Guoyan CUI ; Hongbing CHENG ; Xiongying ZHANG ; Yunxia CHEN ; Jia CUI ; Li MENG
Chinese Journal of Medical Education Research 2017;16(3):272-275
Objective To explore the effect of virtual laboratory (VL) + flipped classroom in teaching of virus infection diagnosis.Methods 40 students of Class One from clinical medical undergraduates of Grade 2014 were randomly taken as the experimental group,with 40 students of Class Two as the control group.The experiment group adopted flipped classroom teaching by virtual lab platform and classroom activities,while the control group adopted traditional classroom teaching such as watching video and lecturing.Finally post-test scores were compared by the independent samples t-test of SPSS 18.0 statistical software between the two groups.The teaching effects were evaluated through questionnaires survey in experimental group.Results The scores (82.73 ± 2.62) of comprehensive assessments were superior to the control scores (57.94 ± 4.65).Difference between the two groups was statistically significant (t=29.380,P=0.000).Students' satisfaction concerning the teaching methods and effects of the flipped classroom in experimental group was up to 85%.Conclusion Flipped classroom based on internet virtual lab platform in teaching of virus infection diagnosis can enhance the teaching quality and improve students' learning enthusiasm and thinking ability.

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