1.Integrating biogravimetric analysis and machine learning for systematic studies of botanical materials: From bioactive constituent identification to production area prediction.
Sinan WANG ; Huiru XIANG ; Xinyuan PAN ; Jianyang PAN ; Lu ZHAO ; Yi WANG ; Shaoqing CUI ; Yu TANG
Journal of Pharmaceutical Analysis 2025;15(10):101222-101222
In general, bioassay-guided fractionation and isolation of bioactive constituents from botanical materials frequently ended up with the reward of a single compound. However, botanical materials typically exert their therapeutic actions through multi-pathway effects due to the intrinsic complex nature of chemical constituents. In addition, the content of bioactive compounds in botanical materials is largely dependent on humidity, temperature, soil, especially geographical origins, from which rapid and accurate identification of plant materials is pressingly needed. These long-standing obstacles collectively impede the deep exploitation and application of these versatile natural sources. To address the challenges, a new paradigm integrating biogravimetric analyses and machine learning-driven origin classification (BAMLOC) was developed. The biogravimetric analyses are based on absolute qHNMR quantification and in vivo zebrafish model-assisted activity index calculation, by which bioactive substance groups jointly responsible for the bioactivities in all fractions are pinpointed before any isolation effort. To differentiate origin-different botanical materials varying in the content of bioactive substance groups, principal component analysis, linear discriminant analysis, and hierarchical cluster analysis in conjunction with supervised support vector machine are employed to classify and predict production areas based on the detection of volatile organic compounds by E-nose and GC-MS. Expanding BAMLOC to Codonopsis Radix enables the identification of polyacetylenes and pyrrolidine alkaloids as the bioactive substance group for immune restoration effect and accurately determines the origins of plants. This study advances the toolbox for the discovery of bioactive compounds from complex mixtures and lays a more definitive foundation for the in-depth utilization of botanical materials.
2.Clinical phenotype and genetic analysis of a child with CAKUTHED syndrome due to variant of PBX1 gene.
Jiao TANG ; Chuan ZHANG ; Ruiqiong YANG ; Xinyuan TIAN ; Bingbo ZHOU ; Yupei WANG ; Ling HUI
Chinese Journal of Medical Genetics 2025;42(12):1471-1476
UNLABELLED:
OBJECTIVE:To explore the clinical characteristics and genetic etiology of a child with CAKUTHED syndrome.
METHODS:
A child who was admitted to the neonatal department of Gansu Provincial Maternal and Child Health Care Hospital due to "neonatal asphyxia" in May 2021 was selected as the study subject. Genomic DNA was extracted from peripheral venous blood samples from the child and his parents, and whole exome sequencing (WES) was carried out. Sanger sequencing was used to verify the candidate variant of the PBX1 gene. Based on the guidelines from the American College of Medical Genetics and Genomics (ACMG), the pathogenicity of candidate variants was rated. This study was approved by the Medical Ethics Committee of the Hospital [Ethics No.: 2021GSFY (65)].
RESULTS:
The proband, a male neonate, manifested renal dysplasia, congenital heart disease, pulmonary dysplasia, mediastinal hernia, cryptorchidism, and clavicle dysplasia. WES revealed that he had harbored a heterozygous c.863G>A (p.Arg288Gln) missense variant in exon 6 of PBX1 gene, which resulted substitution of Arginine at position 288 by Glutamine, for which both parents were of the wild type. The variant was unreported previously and rated as pathogenic (PS2+PM1+PM2_Supporting+PP2+PP3) based on the ACMG guidelines.
CONCLUSION
The c.863G>A variant of the PBX1 gene probably underlay the pathogenesis in the proband. Above finding has enriched the mutational spectrum of the PBX1 gene.
Humans
;
Male
;
Pre-B-Cell Leukemia Transcription Factor 1/genetics*
;
Phenotype
;
Infant, Newborn
;
Exome Sequencing
;
Mutation, Missense
;
Heart Defects, Congenital/genetics*
;
Abnormalities, Multiple/genetics*
3.Study on the inhibitory effect and mechanism of Modified qifang weitong granules on gastric cancer
Xinyuan CHEN ; Chengting WU ; Changzhou XIONG ; Ting WANG ; Yinhang CUI ; Peibin WU ; Wenlong CHEN ; Huilin CHEN ; Caizhi LIN ; Meiwen TANG
China Pharmacy 2025;36(21):2656-2661
OBJECTIVE To investigate the inhibitory effect and mechanism of Modified qifang weitong granules on gastric cancer based on in vitro and in vivo experiments. METHODS Human gastric cancer HGC-27 cells were divided into the following groups: control group (treated with fetal bovine serum), 10% drug-containing serum group, 15% drug-containing serum group, 20% drug-containing serum group, and 5-fluorouracil (5-Fu) group (positive control, 3.90 μg/mL). After culturing the cells in each group with the corresponding serum/drug solution, their proliferation, migratory and invasive abilities, as well as the cell cycle, were assessed. Additionally, the expression levels of epithelial-mesenchymal transition (EMT)-related proteins [E-cadherin, N-cadherin, and vimentin] in the cells were measured. Logarithmic-phase HGC-27 cells were harvested and subcutaneously injected into the right axillary region of nude mice to establish a subcutaneous xenograft tumor model in nude mice. The successfully modeled tumor-bearing nude mice were randomly divided into model group, low-, medium- and high-dose groups of Modified qifang weitong granules (17.65, 35.29 and 70.58 g/kg, respectively), and 5-Fu group (25 mg/kg), with 5 mice in each group. After 14 days of treatment with the corresponding drugs in each group, the histopathological morphology of the tumor tissues in the nude mice was observed. Immunohistochemistry and Western blot assay were employed to detect the expression levels of EMT- related proteins in the tumor tissues of the nude mice. RESULTS In the cell experiment, compared with the control group, the cell proliferation rate, migration rate, number of invasive cells, as well as the expression levels of N-cadherin and vimentin proteins, and the percentage of cells in the G2/M phase were all significantly decreased/reduced in the 15% drug-containing serum group, 20% drug-containing serum group (P<0.05). Conversely, the percentage of cells in the G0/G1 phase and the expression level of E- cadherin protein were significantly increased (P<0.05). In animal experiment, compared with the model group, the high-dose group of Modified qifang weitong granules exhibited significantly reduced tumor mass and expression levels of N-cadherin and vimentin proteins in the tumor tissues of nude mice (P<0.05), while the expression level of E-cadherinprotein in the tumor tissues was significantly increased (P<0.05). Additionally, the tumor cells varied in size and showed extensive necrosis. CONCLUSIONS Modified qifang weitong granules effectively inhibit gastric cancer in both in vitro and in vivo models, and the mechanism of action is related to the suppression of EMT.
4.Isolation and identification of rabbit-derived Lactobacillus reuteri and evaluation of its probiotic function
Yu CHENG ; Kun XIE ; Yanping JIANG ; Wen CUI ; Jiaxuan LI ; Xiaona WANG ; Xinyuan QIAO ; Lijie TANG ; Yijing LI ; Li WANG
Chinese Journal of Veterinary Science 2024;44(10):2136-2144,2293
Lactic acid bacteria(LAB)were isolated and cultivated from the intestinal contents of rabbits by MRS-CaCO3 solid medium.Identification was achieved through morphological observa-tion,Gram staining,physiological and biochemical characterisation,16S rDNA sequence analysis,and ERIC-PCR analysis.Strains displaying typical Lactobacilli characteristics were exanimated for their biological characteristics,resistance properties,adherence capacity in vitro,colonization abili-ty in vivo,and safety profile.In this study,a total of four strains of Lactobacillus reuteri were iso-lated from rabbits,all of which exhibited typical biological characteristics of LAB.These strains demonstrated inhibitory effects on common pathogenic bacteria in the gastrointestinal tract,with the primary inhibitory substance being bacteriocin.Furthermore,they showed sensitivity to chlor-amphenicol,rifampicin,and erythromycin,and displayed a degree of tolerance to gastrointestinal conditions and high temperature.These stains were capable of successful colonization in rabbits with a higher degree of safety.This study lays a foundation for the development of LAB prepara-tions for the prevention and treatment of rabbit intestinal diseases.
5.Comprehensive evaluation of the medical quality of surgical departments based on indicators of DRGs
Bingyan CAO ; Zhengsheng FANG ; Gang LIU ; Lei NING ; Xinyuan TANG
Modern Hospital 2024;24(12):1887-1890,1894
Objective To find out the advantages and disadvantages of medical quality and provide a scientific basis for more scientific and fine medical quality management by comprehensively evaluating the medical quality of surgical departments of 3 Grade class A hospital.Methods Through literature research and expert consulting,combined with the actual conditions of the hospital,the evaluation indicators were determined.Weights were objectively assigned to the evaluation indicators with the entropy weight method and the surgical medical quality was comprehensively evaluated with non-integer rank WRSR.Results Seen from medical service capacity,the entropy weights of RW ≥2 and Level-4 surgery are relatively big;seen from the efficiency of medical service,the entropy weights of the time consumption index and cost consumption index are relatively big;seen from the safety of medical services,the entropy weight of postoperative death in the perioperative period is the biggest.The results of grad-ing of medical quality evaluation of surgical departments indicated that joint surgery,spinal surgery,neurosurgery,and thoracic surgery were"good"departments;15 departments,such as obstetrics,traumatic orthopedics,ENT,and gynecology,were"gen-eral"departments;and cardiac surgery and stomatology were"poor"departments.Conclusion The medical quality of surgical departments was comprehensively evaluated with non-integer rank WRSR.The evaluation results were consistent with the actual conditions of the hospital.Surgical departments should take targeted measures and make rectifications according to the results of the evaluation;and the hospital should reasonably allocate medical resources and make related policies with evaluation results combined with the needs of the development of departments.
6.Comprehensive evaluation of the medical quality of surgical departments based on indicators of DRGs
Bingyan CAO ; Zhengsheng FANG ; Gang LIU ; Lei NING ; Xinyuan TANG
Modern Hospital 2024;24(12):1887-1890,1894
Objective To find out the advantages and disadvantages of medical quality and provide a scientific basis for more scientific and fine medical quality management by comprehensively evaluating the medical quality of surgical departments of 3 Grade class A hospital.Methods Through literature research and expert consulting,combined with the actual conditions of the hospital,the evaluation indicators were determined.Weights were objectively assigned to the evaluation indicators with the entropy weight method and the surgical medical quality was comprehensively evaluated with non-integer rank WRSR.Results Seen from medical service capacity,the entropy weights of RW ≥2 and Level-4 surgery are relatively big;seen from the efficiency of medical service,the entropy weights of the time consumption index and cost consumption index are relatively big;seen from the safety of medical services,the entropy weight of postoperative death in the perioperative period is the biggest.The results of grad-ing of medical quality evaluation of surgical departments indicated that joint surgery,spinal surgery,neurosurgery,and thoracic surgery were"good"departments;15 departments,such as obstetrics,traumatic orthopedics,ENT,and gynecology,were"gen-eral"departments;and cardiac surgery and stomatology were"poor"departments.Conclusion The medical quality of surgical departments was comprehensively evaluated with non-integer rank WRSR.The evaluation results were consistent with the actual conditions of the hospital.Surgical departments should take targeted measures and make rectifications according to the results of the evaluation;and the hospital should reasonably allocate medical resources and make related policies with evaluation results combined with the needs of the development of departments.
7.Biological effects and toxicity mechanisms of polystyrene nanoplastics: A review
Wenxia BU ; Xinyuan ZHAO ; Xiaoke WANG ; Juan TANG
Journal of Environmental and Occupational Medicine 2023;40(6):728-736
Polystyrene nanoplastics (PS-NPs) are widely used in industry, pharmaceutical and consumer packaging materials, and medical products. The biological health impacts of PS-NPs are receiving increasing attention. Therefore, it is necessary to conduct a literature review of in vitro and in vivo experimental studies from a biological mechanism perspective. Based on the latest research results at home and abroad, this review introduced the characteristics and cell internalization of PS-NPs in cytotoxicity experiments, and summarized the effects of PS-NPs on cytotoxic targets such as mitochondria, lysosomes, proteins, and DNA. In addition, the influencing factors of the health effects of PS-NPs were analyzed from the aspects of physical and chemical properties and cell types. Finally, by discussing the current research hotspots of cytotoxicity mechanism and biological effects, it was anticipated to provide a reference for the health risk management and biological safety assessment of PS-NPs.
8.Townes-Brocks syndrome caused by de novo mutation in spalt-like transcription factor 1 gene: a case report and literature review
Junhe LING ; Yupei WANG ; Jiao TANG ; Xinyuan TIAN ; Duling XU ; Shengju HAO ; Ling HUI
Chinese Journal of Perinatal Medicine 2023;26(7):591-596
Objective:To summarize the clinical features and gene variations in children with Townes-Brocks syndrome (TBS).Methods:The clinical data of a female infant diagnosed with TBS caused by human spalt-like transcription factor 1 ( SALL1) gene mutation in Gansu Maternal and Child Health Hospital in May 2022 were analyzed retrospectively. Relevant articles up to July 2022 were retrieved from several databases including CNKI, VIP, Wanfang, Chinese Medical Journal Network and PubMed with the terms of " SALL1 gene" and "Townes-Brocks syndrome". Patients diagnosed with TBS caused by SALL1 gene mutation were retrieved and the clinical phenotype-genotype correlations in patients with TBS caused by frameshift mutation in SALL1 gene were analyzed and summarized. Descriptive statistical analysis was applied. Results:(1) Clinical data: The index patient was a 40-day-old girl exhibiting major clinical manifestations of polycystic kidney dysplasia, congenital external ear deformity, preaxial polydactyly and recto-perineal fistula. Whole exome sequencing and Sanger sequencing revealed a heterozygous variation of c.420delC (p.S141fs*42) in the SALL1 gene, while the same gene was found to be wild type in her parents and sister. The variant was predicted to be pathogenic (PVS1+PS2+PM2). (2) Literature review retrieved 161 cases of TBS, of which 71 were attributable to a frameshift mutation in SALL1 gene. Clinical phenotypes of the 71 cases and the index case were summarized. TBS was mainly characterized by external ear, hand and anal deformities, sometimes accompanied by hearing loss, abnormal kidney development and foot deformity. A small number of affected cases presented with rare clinical phenotypes such as abnormal eyes, hypothyroidism and abnormal development. At present, the human gene mutation database records 110 variations in the SALL1 gene, with a majority located in exon 2. The most common mutation type was frameshift variation, accounting for 52%, followed by missense variation and nonsense variation. Conclusion:TBS should be considered in children with ear, hand and anal malformations, accompanied by renal dysfunction and hearing loss, and genetic testing is recommended for timely diagnosis.
9.Local recurrence pattern of pT 1-2N 1 breast cancer after modified radical mastectomy—a pooled-analysis of 5442 patients from 12 centers
Xinyuan GUO ; Yujing ZHANG ; Na ZHANG ; Yu TANG ; Xuran ZHAO ; Hao JING ; Hui FANG ; Ge WEN ; Jing CHENG ; Mei SHI ; Qishuai GUO ; Hongfen WU ; Xiaohu WANG ; Changying MA ; Yexiong LI ; Hongmei WANG ; Min LIU ; Shulian WANG
Chinese Journal of Radiation Oncology 2022;31(3):248-252
Objective:To analyze locoregional recurrence (LRR) pattern of patients with pT 1-2N 1 breast cancer after modified radical mastectomy, with and without adjuvant radiotherapy (RT). Methods:A total of 5442 eligible patients with breast cancer from 12 Chinese centers were included. The LRR sites and the effect of RT at different sites on recurrence in patients with and without RT were analyzed. The Kaplan-Meier method was used to calculate the cumulative LRR rate, and the difference was compared by the log-rank test.Results:With a median follow-up time of 63.8 months for the entire cohort, 395 patients developed LRR. The chest wall and supraclavicular fossa were the most common LRR sites, regardless of RT or molecular subtypes. The 5-year chest wall recurrence rates for patients with and without chest wall irradiation were 2.5% and 3.8%( P=0.003); the 5-year supraclavicular lymph nodal recurrence rates for patients with and without supraclavicular fossa irradiation were 1.3% and 4.1%( P<0.001); the 5-year axillary recurrence-free rates for patients with and without axillary irradiation were 0.8% and 1.5%( HR=0.31, 95% CI: 0.04-2.23, P=0.219); and the 5-year internal mammary nodal recurrence-free rates for patients with and without internal mammary nodal irradiation were 0.8% and 1.5%( HR=0.45, 95% CI: 0.11-1.90, P=0.268). Conclusions:The chest wall and supraclavicular fossa are the most common LRR sites of patients with pT 1-2N 1 breast cancer after modified radical mastectomy, which is not affected by adjuvant RT or molecular subtypes. The chest wall and supraclavicular fossa irradiation significantly reduce the risk of recurrence in the corresponding area. However, axillary and internal mammary nodal irradiation has no impact on the risk of recurrence in the corresponding area.
10.Clinical Efficacy of Zishui Bugan Decoction on Perimenopausal Insomnia Patients with Liver-kidney Deficiency
Xiujuan MI ; Junnan FANG ; Xinyuan YU ; Zhaoliang LUO ; Jun TANG ; Jing CHEN
Chinese Journal of Experimental Traditional Medical Formulae 2022;28(16):116-122
ObjectiveTo evaluate the efficacy of Zishui Bugan decoction on perimenopausal insomnia of liver-kidney deficiency type and the safety. MethodA randomized, double-blind, placebo-controlled trial was designed. To be specific, 72 patients of perimenopausal insomnia with Liver-kidney deficiency were randomized into the treatment group and the control group at the ratio of 1∶1 and they were respectively treated with Zishui Bugan decoction and placebo for 3 weeks. The Pittsburgh sleep quality index (PSQI), modified Kupperman index, traditional Chinese medicine (TCM) syndrome score, self-rating anxiety scale (SAS) score, and self-rating depression scale (SDS) score, were compared before and after treatment to determine the clinical efficacy, with adverse effects recorded. ResultThe total effective rate for insomnia was 85.3%(29/34) in treatment group and 17.6%(6/34) in control group(Z=-5.582,P<0.01). After treatment, PSQI score, modified Kupperman index, TCM syndrome score, and SAS score were improved in both groups (P<0.05, P<0.01), particularly the treatment group which showed significant difference from the control group (P<0.05,P<0.01). The safety indicators were insignificantly different between two groups before and after treatment. No related adverse effects were reported in both groups during the treatment. ConclusionZishui Bugan decoction can improve the sleep quality and alleviate the menopausal symptoms, such as depression and anxiety, which shows ideal efficacy and safety for the perimenopausal insomnia with liver-kidney deficiency type.

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