1.Fetal electrocardiogram signal extraction and analysis method combining fast independent component analysis algorithm and convolutional neural network.
Yuyao YANG ; Jingyu HAO ; Shuicai WU
Journal of Biomedical Engineering 2023;40(1):51-59
Fetal electrocardiogram (ECG) signals provide important clinical information for early diagnosis and intervention of fetal abnormalities. In this paper, we propose a new method for fetal ECG signal extraction and analysis. Firstly, an improved fast independent component analysis method and singular value decomposition algorithm are combined to extract high-quality fetal ECG signals and solve the waveform missing problem. Secondly, a novel convolutional neural network model is applied to identify the QRS complex waves of fetal ECG signals and effectively solve the waveform overlap problem. Finally, high quality extraction of fetal ECG signals and intelligent recognition of fetal QRS complex waves are achieved. The method proposed in this paper was validated with the data from the PhysioNet computing in cardiology challenge 2013 database of the Complex Physiological Signals Research Resource Network. The results show that the average sensitivity and positive prediction values of the extraction algorithm are 98.21% and 99.52%, respectively, and the average sensitivity and positive prediction values of the QRS complex waves recognition algorithm are 94.14% and 95.80%, respectively, which are better than those of other research results. In conclusion, the algorithm and model proposed in this paper have some practical significance and may provide a theoretical basis for clinical medical decision making in the future.
Algorithms
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Neural Networks, Computer
;
Electrocardiography
;
Databases, Factual
;
Fetus
2.Multimodal high-grade glioma semantic segmentation network with multi-scale and multi-attention fusion mechanism.
Yuchao WU ; Lan LIN ; Shuicai WU
Journal of Biomedical Engineering 2022;39(3):433-440
Glioma is a primary brain tumor with high incidence rate. High-grade gliomas (HGG) are those with the highest degree of malignancy and the lowest degree of survival. Surgical resection and postoperative adjuvant chemoradiotherapy are often used in clinical treatment, so accurate segmentation of tumor-related areas is of great significance for the treatment of patients. In order to improve the segmentation accuracy of HGG, this paper proposes a multi-modal glioma semantic segmentation network with multi-scale feature extraction and multi-attention fusion mechanism. The main contributions are, (1) Multi-scale residual structures were used to extract features from multi-modal gliomas magnetic resonance imaging (MRI); (2) Two types of attention modules were used for features aggregating in channel and spatial; (3) In order to improve the segmentation performance of the whole network, the branch classifier was constructed using ensemble learning strategy to adjust and correct the classification results of the backbone classifier. The experimental results showed that the Dice coefficient values of the proposed segmentation method in this article were 0.909 7, 0.877 3 and 0.839 6 for whole tumor, tumor core and enhanced tumor respectively, and the segmentation results had good boundary continuity in the three-dimensional direction. Therefore, the proposed semantic segmentation network has good segmentation performance for high-grade gliomas lesions.
Attention
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Glioma/diagnostic imaging*
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Humans
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Magnetic Resonance Imaging/methods*
;
Semantics
3.Monitoring microwave ablation using ultrasound backscatter homodyned K imaging: Comparison of estimators.
Shuang SONG ; Yinghua ZHANG ; Zhuhuang ZHOU ; Shuicai WU
Journal of Biomedical Engineering 2021;38(3):520-527
The feasibility of ultrasound backscatter homodyned K model parametric imaging (termed homodyned K imaging) to monitor coagulation zone during microwave ablation was investigated. Two recent estimators for the homodyned K model parameter, RSK (the estimation method based on the signal-to-noise ratio, the skewness, and the kurtosis of the amplitude envelope of ultrasound) and XU (the estimation method based on the first moment of the intensity of ultrasound,
Algorithms
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Animals
;
Liver/diagnostic imaging*
;
Microwaves
;
Radiofrequency Ablation
;
Swine
;
Ultrasonography
4.A review on the application of UK Biobank in neuroimaging.
Lan LIN ; Min XIONG ; Shuicai WU
Journal of Biomedical Engineering 2021;38(3):594-601
UK Biobank (UKB) is a forward-looking epidemiological project with over 500, 000 people aged 40 to 69, whose image extension project plans to re-invite 100, 000 participants from UKB to perform multimodal brain magnetic resonance imaging. Large-scale multimodal neuroimaging combined with large amounts of phenotypic and genetic data provides great resources to conduct brain health-related research. This article provides an in-depth overview of UKB in the field of neuroimaging. Firstly, neuroimage collection and imaging-derived phenotypes are summarized. Secondly, typical studies of UKB in neuroimaging areas are introduced, which include cardiovascular risk factors, regulatory factors, brain age prediction, normality, successful and morbid brain aging, environmental and genetic factors, cognitive ability and gender. Lastly, the open challenges and future directions of UKB are discussed. This article has the potential to open up a new research field for the prevention and treatment of neurological diseases.
Biological Specimen Banks
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Brain
;
Neuroimaging
;
United Kingdom
5.Advances in Ultrasound Tissue Characterization and Its Application in Thermal Ablation of Tumors.
He WANG ; Tao XIA ; Shuang SONG ; Zhuhuang ZHOU ; Shuicai WU
Chinese Journal of Medical Instrumentation 2021;45(2):176-182
The methods of monitoring the thermal ablation of tumor are compared and analyzed in recent years. The principle method results and insufficient of ultrasound elastography and quantitative ultrasound imaging are discussed. The results show that ultrasonic tissue signature has great development space in the field of real-time monitoring of thermal ablation, but there are still some problems such as insufficient monitoring accuracy difficulty in whole-course monitoring and insufficient
Catheter Ablation
;
Elasticity Imaging Techniques
;
Humans
;
Hyperthermia, Induced
;
Liver/surgery*
;
Neoplasms/surgery*
;
Ultrasonography
6.Application of semantic segmentation based on convolutional neural network in medical images.
Yuchao WU ; Lan LIN ; Jingxuan WANG ; Shuicai WU
Journal of Biomedical Engineering 2020;37(3):533-540
With the rapid development of network structure, convolutional neural networks (CNN) consolidated its position as a leading machine learning tool in the field of image analysis. Therefore, semantic segmentation based on CNN has also become a key high-level task in medical image understanding. This paper reviews the research progress on CNN-based semantic segmentation in the field of medical image. A variety of classical semantic segmentation methods are reviewed, whose contributions and significance are highlighted. On this basis, their applications in the segmentation of some major physiological and pathological anatomical structures are further summarized and discussed. Finally, the open challenges and potential development direction of semantic segmentation based on CNN in the area of medical image are discussed.
7.A new method for classification of Alzheimer's disease combined with structural magnetic resonance imaging texture features.
Tongpeng CHU ; Chunlan YANG ; Min LU ; Shuicai WU
Journal of Biomedical Engineering 2019;36(1):94-100
In this paper, a new method for the classification of Alzheimer's disease (AD) using multi-feature combination of structural magnetic resonance imaging is proposed. Firstly, hippocampal segmentation and cortical thickness and volume measurement were performed using FreeSurfer software. Then, histogram, gradient, length of gray level co-occurrence matrix and run-length matrix were used to extract the three-dimensional (3D) texture features of the hippocampus, and the parameters with significant differences between AD, MCI and NC groups were selected for correlation study with MMSE score. Finally, AD, MCI and NC are classified and identified by the extreme learning machine. The results show that texture features can provide better classification results than volume features on both left and right sides. The feature parameters with complementary texture, volume and cortical thickness had higher classification recognition rate, and the classification accuracy of the right side (100%) was higher than that of the left side (91.667%). The results showed that 3D texture analysis could reflect the pathological changes of hippocampal structures of AD and MCI patients, and combined with multi-feature analysis, it could better reflect the essential differences between AD and MCI cognitive impairment, which was more conducive to clinical differential diagnosis.
8.Research progress on computed tomography image detection and classification of pulmonary nodule based on deep learning.
Jingxuan WANG ; Lan LIN ; Siyuan ZHAO ; Xuetao WU ; Shuicai WU
Journal of Biomedical Engineering 2019;36(4):670-676
Computer-aided diagnosis based on computed tomography (CT) image can realize the detection and classification of pulmonary nodules, and improve the survival rate of early lung cancer, which has important clinical significance. In recent years, with the rapid development of medical big data and artificial intelligence technology, the auxiliary diagnosis of lung cancer based on deep learning has gradually become one of the most active research directions in this field. In order to promote the deep learning in the detection and classification of pulmonary nodules, we reviewed the research progress in this field based on the relevant literatures published at domestic and overseas in recent years. This paper begins with a brief introduction of two widely used lung CT image databases: lung image database consortium and image database resource initiative (LIDC-IDRI) and Data Science Bowl 2017. Then, the detection and classification of pulmonary nodules based on different network structures are introduced in detail. Finally, some problems of deep learning in lung CT image nodule detection and classification are discussed and conclusions are given. The development prospect is also forecasted, which provides reference for future application research in this field.
Deep Learning
;
Humans
;
Lung Neoplasms
;
diagnostic imaging
;
Radiographic Image Interpretation, Computer-Assisted
;
Reproducibility of Results
;
Solitary Pulmonary Nodule
;
diagnostic imaging
;
Tomography, X-Ray Computed
9.A review on brain age prediction in brain ageing.
Lan LIN ; Jingxuan WANG ; Zhenrong FU ; Xuetao WU ; Shuicai WU
Journal of Biomedical Engineering 2019;36(3):493-498
The human brain deteriorates as we age, and the rate and the trajectories of these changes significantly vary among brain regions and among individuals. Because neuroimaging data are potentially important indicators of individual's brain health, they are commonly used in brain age prediction. In this review, we summarize brain age prediction model from neuroimaging-based studies in the last ten years. The studies are categorized based on their image modalities and feature types. The results indicate that the prediction frameworks based on neuroimaging holds promise toward individualized brain age prediction. Finally, we addressed the challenges in brain age prediction and suggested some future research directions.
Aging
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Brain
;
diagnostic imaging
;
physiology
;
Humans
;
Neuroimaging
10.Feature extraction of motor imagery electroencephalography based on time-frequency-space domains.
Yueru WANG ; Xin LI ; Honghong LI ; Chengcheng SHAO ; Lijuan YING ; Shuicai WU
Journal of Biomedical Engineering 2014;31(5):955-961
The purpose of using brain-computer interface (BCI) is to build a bridge between brain and computer for the disable persons, in order to help them to communicate with the outside world. Electroencephalography (EEG) has low signal to noise ratio (SNR), and there exist some problems in the traditional methods for the feature extraction of EEG, such as low classification accuracy, lack of spatial information and huge amounts of features. To solve these problems, we proposed a new method based on time domain, frequency domain and space domain. In this study, independent component analysis (ICA) and wavelet transform were used to extract the temporal, spectral and spatial features from the original EEG signals, and then the extracted features were classified with the method combined support vector machine (SVM) with genetic algorithm (GA). The proposed method displayed a better classification performance, and made the mean accuracy of the Graz datasets in the BCI Competitions of 2003 reach 96%. The classification results showed that the proposed method with the three domains could effectively overcome the drawbacks of the traditional methods based solely on time-frequency domain when the EEG signals were used to describe the characteristics of the brain electrical signals.
Algorithms
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Brain
;
physiology
;
Brain-Computer Interfaces
;
Electroencephalography
;
Humans

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