1.Use of multiplex molecular respiratory panel in COVID-19 patients with suspected co-infections Insights and considerations in results interpretation
Nawi A.S. ; Engku Abd Rahman E.N.S. ; Nik Zuraina N.M.N. ; Musa N. ; Salleh M.Z. ; Samsudin M.N.F. ; Chua W.C. ; Muhd Besari A. ; Hassan R. ; Chan Y.Y.
Tropical Biomedicine 2025;42(No. 1):21-26
As critically ill COVID-19 patients are prone to infections by other respiratory pathogens, this study aimed
to investigate the detection of respiratory co-pathogens in such patients, by employing a multiplex
respiratory molecular panel. Conducted at Universiti Sains Malaysia Specialist Hospital (HPUSM) from
November 1, 2021, to November 1, 2022, this retrospective cross-sectional study analysed adults
admitted with confirmed COVID-19. Oropharyngeal/ nasopharyngeal swabs collected upon admission
were tested using the Fast Track Diagnostic (FTD®) Respiratory Pathogens 33 multiplex kit to detect
other respiratory pathogens. Within 48 hours of admission, the presence and type of organisms were
determined to assess community co-infections. Among 48 critically ill COVID-19 patients (26 male; mean
age, 62.2 years), clinically significant organisms were found in 32 patients (67%). Bacterial co-infections
or co-colonization were detected in 91% (29/32) of these patients, with Klebsiella pneumoniae (40%) and
Staphylococcus aureus (23%) were the most common, followed by Streptococcus pneumoniae (11%),
Moraxella catarrhalis (4%), and Haemophilus influenzae (2%). Fungal (6%) and viral (2%) co-infections
were less frequent. The use of syndromic respiratory panel in critically ill COVID-19 patients offers the
advantage of being highly sensitive, rapid, and able to detect multiple pathogens. However, detection of
multiple respiratory pathogens needs to be interpreted with caution, taking into consideration patient’s
clinical and radiological findings, as well as quantitative molecular data.
2.Tissue Clock Beyond Time Clock: Endovascular Thrombectomy for Patients With Large Vessel Occlusion Stroke Beyond 24 Hours
Ghada A. MOHAMED ; Raul G. NOGUEIRA ; Muhammed Amir ESSIBAYI ; Hassan ABOUL-NOUR ; Mahmoud MOHAMMADEN ; Diogo C. HAUSSEN ; Aldo Mendez RUIZ ; Bradley A. GROSS ; Okkes KUYBU ; Mohamed M. SALEM ; Jan-Karl BURKHARDT ; Brian JANKOWITZ ; James E. SIEGLER ; Pratit PATEL ; Taryn HESTER ; Santiago ORTEGA-GUTIERREZ ; Mudassir FAROOQUI ; Milagros GALECIO-CASTILLO ; Thanh N. NGUYEN ; Mohamad ABDALKADER ; Piers KLEIN ; Jude H. CHARLES ; Vasu SAINI ; Dileep R. YAVAGAL ; Ammar JUMAH ; Ali ALARAJ ; Sophia PENG ; Muhammad HAFEEZ ; Omar TANWEER ; Peter KAN ; Jacopo SCAGGIANTE ; Stavros MATSOUKAS ; Johanna T. FIFI ; Stephan A. MAYER ; Alex B. CHEBL
Journal of Stroke 2023;25(2):282-290
Background:
and Purpose Randomized trials proved the benefits of mechanical thrombectomy (MT) for select patients with large vessel occlusion (LVO) within 24 hours of last-known-well (LKW). Recent data suggest that LVO patients may benefit from MT beyond 24 hours. This study reports the safety and outcomes of MT beyond 24 hours of LKW compared to standard medical therapy (SMT).
Methods:
This is a retrospective analysis of LVO patients presented to 11 comprehensive stroke centers in the United States beyond 24 hours from LKW between January 2015 and December 2021. We assessed 90-day outcomes using the modified Rankin Scale (mRS).
Results:
Of 334 patients presented with LVO beyond 24 hours, 64% received MT and 36% received SMT only. Patients who received MT were older (67±15 vs. 64±15 years, P=0.047) and had a higher baseline National Institutes of Health Stroke Scale (NIHSS; 16±7 vs.10±9, P<0.001). Successful recanalization (modified thrombolysis in cerebral infarction score 2b-3) was achieved in 83%, and 5.6% had symptomatic intracranial hemorrhage compared to 2.5% in the SMT group (P=0.19). MT was associated with mRS 0–2 at 90 days (adjusted odds ratio [aOR] 5.73, P=0.026), less mortality (34% vs. 63%, P<0.001), and better discharge NIHSS (P<0.001) compared to SMT in patients with baseline NIHSS ≥6. This treatment benefit remained after matching both groups. Age (aOR 0.94, P<0.001), baseline NIHSS (aOR 0.91, P=0.017), Alberta Stroke Program Early Computed Tomography (ASPECTS) score ≥8 (aOR 3.06, P=0.041), and collaterals scores (aOR 1.41, P=0.027) were associated with 90-day functional independence.
Conclusion
In patients with salvageable brain tissue, MT for LVO beyond 24 hours appears to improve outcomes compared to SMT, especially in patients with severe strokes. Patients’ age, ASPECTS, collaterals, and baseline NIHSS score should be considered before discounting MT merely based on LKW.
3.Clinical and Safety Outcomes of Endovascular Therapy 6 to 24 Hours After Large Vessel Occlusion Ischemic Stroke With Tandem Lesions
Milagros GALECIO-CASTILLO ; Mudassir FAROOQUI ; Ameer E. HASSAN ; Mouhammad A. JUMAA ; Afshin A. DIVANI ; Marc RIBO ; Michael ABRAHAM ; Nils H. PETERSEN ; Johanna T. FIFI ; Waldo R. GUERRERO ; Amer M. MALIK ; James E. SIEGLER ; Thanh N. NGUYEN ; Sunil SHETH ; Albert J. YOO ; Guillermo LINARES ; Nazli JANJUA ; Darko QUISPE-OROZCO ; Wondwossen TEKLE ; Syed F. ZAIDI ; Sara Y. SABBAGH ; Marta OLIVÉ-GADEA ; Tiffany BARKLEY ; Reade De LEACY ; Kenyon W. SPRANKLE ; Mohamad ABDALKADER ; Sergio SALAZAR-MARIONI ; Jazba SOOMRO ; Weston GORDON ; Charoskhon TURABOVA ; Juan VIVANCO-SUAREZ ; Aaron RODRIGUEZ-CALIENES ; Maxim MOKIN ; Dileep R. YAVAGAL ; Tudor JOVIN ; Santiago ORTEGA-GUTIERREZ
Journal of Stroke 2023;25(3):378-387
Background:
and Purpose Effect of endovascular therapy (EVT) in acute large vessel occlusion (LVO) patients with tandem lesions (TLs) within 6–24 hours after last known well (LKW) remains unclear. We evaluated the clinical and safety outcomes among TL-LVO patients treated within 6–24 hours.
Methods:
This multicenter cohort was divided into two groups, based on LKW to puncture time: early window (<6 hours), and late window (6–24 hours). Primary clinical and safety outcomes were 90-day functional independence measured by the modified Rankin Scale (mRS: 0–2) and symptomatic intracranial hemorrhage (sICH). Secondary outcomes were successful reperfusion (modified Thrombolysis in Cerebral Infarction score ≥2b), first-pass effect, early neurological improvement, ordinal mRS, and in-hospital and 90-day mortality.
Results:
Of 579 patients (median age 68, 32.1% females), 268 (46.3%) were treated in the late window and 311 (53.7%) in the early window. Late window group had lower median National Institutes of Health Stroke Scale score at admission, Alberta Stroke Program Early Computed Tomography Score, rates of intravenous thrombolysis, and higher rates for perfusion imaging. After adjusting for confounders, the odds of 90-day mRS 0–2 (47.7% vs. 45.0%, adjusted odds ratio [aOR] 0.71, 95% confidence interval [CI] 0.49–1.02), favorable shift in mRS (aOR 0.88, 95% CI 0.44–1.76), and sICH (3.7% vs. 5.2%, aOR 0.56, 95% CI 0.20–1.56) were similar in both groups. There was no difference in secondary outcomes. Increased time from LKW to puncture did not predicted the probability of 90-day mRS 0–2 (aOR 0.99, 95% CI 0.96–1.01, for each hour delay) among patients presenting <24 hours.
Conclusion
EVT for acute TL-LVO treated within 6–24 hours after LKW was associated with similar rates of clinical and safety outcomes, compared to patients treated within 6 hours.
4.First molecular detection of porcine circovirus type 4 (PCV4) in Malaysia
Tan, C.Y. ; Thanawongnuwech, R. ; Arshad, S.S. ; Hassan, L. ; Lee, C.Y. ; Low, S.E. ; Fong, W.C.M. ; Ooi, P.T.
Tropical Biomedicine 2023;40(No.3):301-306
Porcine circovirus type 4 (PCV4) is the newest member in the porcine circovirus family, first reported in
2020. To date, the presence of PCV4 has only been reported in China, South Korea and most recently
in Thailand. Detection of PCV4 have been reported in various production stages of pigs from piglets,
finishers to sows; associated with a myriad of clinical manifestations including porcine dermatitis and
nephropathy syndrome (PDNS), postweaning multisystemic wasting syndrome (PMWS), respiratory,
enteric and neurological diseases. While successful virus isolation and culture has yet to be reported,
pathogenicity of PCV4 has been demonstrated through infectious clone studies. The objective of this
study is to investigate the presence of PCV4 in Malaysian porcine population to update the epidemiology
of porcine circoviruses in Malaysia. A total of 49 samples from commercial intensive pig farms,
abattoir and wild boar population were subjected to conventional polymerase chain reaction assay to
detect PCV4 capsid (cap) genome. Resulting cap nucleotide sequences were analyzed for maximum
likelihood phylogeny relationship. Results revealed that PCV4 is present in Peninsular Malaysia at a
molecular prevalence of 4.08% (2 / 49 samples). Both PCV4 positive samples originated from clinically
healthy finishers. Malaysian PCV4 strains were classified as genotype PCV4b, and were found to be
phylogenetically distinct from the China, South Korea and Thailand strains. With this latest update of
the novel PCV4 in Malaysia, it is clear that more attention needs to be given to the investigation of
novel porcine circoviruses (PCV) and management of PCV diseases.
5.A conventional multiplex PCR for the detection of four common soil-transmitted nematodes in human feces: development and validation
Hassan, N.A. ; Noor Badi, F.A. ; Mohd-Shaharuddin, N. ; Wan Yusoff, W.S. ; Lim, Y.A.L. ; Chua, K.H. ; Sidi Omar, S.F.N. ; Chang, L.Y. ; Majid, H.A. ; Ngui, R.
Tropical Biomedicine 2022;39(No.1):135-142
Soil-transmitted helminth (STH) infections, mainly caused by Ascaris lumbricoides, Trichuris
trichiura, and hookworms, are among the most common intestinal parasites that infect
humans. The infections are widely distributed throughout tropical and subtropical countries,
including Malaysia, particularly in underprivileged communities. Microscopic and culture
techniques have been used as a gold standard for diagnostic techniques. However, these
methods yield low sensitivity and specificity, laborious and time-consuming. Therefore,
simple, rapid, and accurate alternative methods are needed for the simultaneous detection
of STH infections. Although advanced technologies such as real-time multiplex PCR have
been established, the use of this technique as a routine diagnostic is limited due to the
high cost of the instrument. Therefore, a single-round multiplex conventional PCR assay for
rapid detection of four STH species in the fecal sample was developed in this study. To
perform the single-round multiplex PCR, each pair of species-specific primers was selected
from target genes, including Ancylostoma duodenale (Internal Transcribed Spacer 2; accession
No. AJ001594; 156 base pair), Necator americanus (ITS 2; accession No. AJ001599; 225 base pair),
Ascaris lumbricoides (Internal Transcribed Spacer 1; accession No. AJ000895; 334 base pair)
and Trichuris triciura (partial ITS 1, 5.8s rRNA and partial ITS 2; accession No. AM992981; 518
base pair). The results showed that the newly designed primers could detect the DNA of STH
at low concentrations (0.001 ng/μl) with no cross-amplification with other species. This
assay enables the differentiation of single infections as well as mixed infections. It could
be used as an alternative and is a convenient method for the detection of STHs, especially
for the differentiation of N. americanus and A. duodenale.
6.Medicinal plants with antimalarial activities mediated via glycogen synthase kinase-3 beta (GSK3β) inhibition
Hassan, W.R.M. ; Ali, A.H. ; Basir, R. ; Embi, N. ; Sidek, H.M.
Tropical Biomedicine 2022;39(No.3):384-393
Many of the therapeutic effects of plant extracts and bioactive compounds appear related to their
immunomodulatory effects and impact on the host immune system. The immune response is desirable
to mitigate established infections and, in the case of severe malaria, is a feasible approach to dealing
with the overwhelming cytokine response. Glycogen synthase kinase-3 (GSK3), a Ser/Thr kinase that
is a central regulator of the cytokine response, is a promising antimalarial drug target. In this review,
we discussed our ongoing research projects, which include assessing the antimalarial activities of
medicinal plants and their bioactive compounds, immunomodulatory activities mediated by GSK3, and
the potential inflammatory pathway involved in malarial infection.
7.Inhibition of Activin A suppressed tumor necrosis factor-α secretion and improved histopathological conditions in malarial mice
Chin, V.K. ; Tie, T.H. ; Abd Majid, R. ; Hassan, H. ; Nordin, N. ; Abas, R. ; Basir, R.
Tropical Biomedicine 2021;38(No.1):187-204
Malaria infection still remains as one of the most prominent parasitic diseases afflicting
mankind in tropical and subtropical regions. The severity of malaria infection has often
been associated to exuberant host immune inflammatory responses that could possibly
lead to severe immunopathological conditions and subsequent death of host tissues. Activin
A is a protein belonging to the transforming growth factor-beta (TGF-β) family that regulates
multiple physiological processes and pathological-associated diseases. The biological
roles of activin A have been associated with manipulation of inflammation-related processes
and modulation of host immune responses. This implies that activin A protein could play a
role in malaria pathogenesis since malaria infection has been closely linked to severe
immune responses leading to death, However, the actual in vivo role of activin A in malaria
infection remains elusive. Hence, this study was undertaken to investigate the involvement
of activin A in malaria infection as well as to assess the modulating effects of activin A on
the cytokine releases (TNF-α, IFN-γ and IL-10) and histopathological changes in major affected
organs (kidney, liver, lung, brain and spleen) in malarial mice infected with Plasmodium
berghei ANKA. Our results showed that the concentrations of plasma activin A were significantly
increased in malarial mice throughout the study periods. Also. the systemic activin A level
was positively correlated with malaria parasitemia. This indicates that activin A could play
a role in malaria pathogenesis and malaria parasitemia development. Plasma TNF-α,
IFN-γ and IL-10 cytokine levels were significantly increased in malarial mice at day-5 post
infection, suggesting that these cytokines attributed to severe malaria pathogenesis.
Histopathological features such as sequestration of parasitized red blood cells (pRBCs)
and hemozoin formation were amongst the most common pathological conditions observed
in tissues of major affected organs (kidney, liver, lung, brain and spleen) in malarial mice.
Neutralization of activin A production via recombinant mouse activin RIIA Fc chimera (rmActivin
RIIA Fc chimera) had significantly reduced the parasitemia levels in malarial mice. The
release of TNF-α cytokine was significantly reduced as well as the sequestration of
parasitized pRBCs and hemozoin formation in major affected organs in malarial mice were
also alleviated following inhibition of activin A production. Overall, this preliminary study
suggests that activin A could play an immune modulation role in malaria pathogenesis
through modulation of TNF-α release that benefits host from severe pathological destructions
provoked by intensified inflammatory responses. Further studies are warranted to elucidate
the precise mechanism of immune modulation mediated by activin A and its associated
immune-modulation mediators in regulating the inflammatory responses elicited during
the course of malaria infection.
8.Staphylococcus aureus derived hyaluronic acid and bacillus Calmette-Guérin purified proteins as immune enhancers to rabies vaccine and related immuno-histopathological alterations
Rania Ibrahim SHEBL ; Mohamed E. AMER ; Tamer M. M. ABUAMARA ; Emadeldin R. MATAR ; Hassan Fathy AHMED ; Tamer Albasyoni GOMAH ; Laila E. EL MOSELHY ; Mohammed ABU-ELGHAIT ; Aly Fahmy MOHAMED
Clinical and Experimental Vaccine Research 2021;10(3):229-239
Purpose:
One of the essential goals regarding the successful control of rabies infection is the development of a safe, effective, and inexpensive vaccine. the current study aimed to evaluate the inactivation potential of β-propiolactone (βPL), binary ethyleneimine (BEI), and hydrogen peroxide (H2O2).
Materials and Methods:
Estimating the inactivation kinetics of βPL, BEI, and H2O2 revealed that the tested inactivants could completely and irreversibly inactivate rabies virus within 2, 12, and 4 hours, respectively while maintaining its viral immunogenicity. The potency of βPL, BEI, and H2O2 inactivated vaccines was higher than the World Health Organization acceptance limit and were in the order of 3.75, 4.21, and 3.64 IU/mL, respectively. Monitoring the humoral and cellular immunity elicited post-immunization using Staphylococcus aureus derived hyaluronic acid (HA) and bacillus Calmette-Guérin purified protein derivative (PPD) adjuvanted rabies vaccine candidates were carried out using enzyme-linked immunosorbent assay.
Results:
Results:
demonstrated that both adjuvants could progressively enhance the release of anti-rabies total immunoglobulin G as well as the pro-inflammatory mediators (interferon-gamma and interleukin-5) relative to time. However, a higher immune response was developed in the case of HA adjuvanted rabies vaccine compared to PPD adjuvanted one. The harmful consequences of the tested adjuvants were considered via investigating the histopathological changes in the tissues of the immunized rats using hematoxylin and eosin stain. Lower adverse effects were observed post-vaccination with HA and PPD adjuvanted vaccines compared to that detected following administration of the currently used alum as standard adjuvant.
Conclusion
Our findings suggested that HA and PPD could serve as a promising platform for the development of newly adjuvanted rabies vaccines with elevated immune enhancing potentials and lower risk of health hazards.
9.Population Dynamics of Intermediate-Host Snails in the White Nile River, Sudan: A Year-Round Observational Descriptive Study
Hassan A. H. A. ISMAIL ; Abed el Aziz A. el R. M. AHMED ; Young-Ha LEE ; Mousab Siddig ELHAG ; Youngjin KIM ; Seungman CHA ; Yan JIN
The Korean Journal of Parasitology 2021;59(2):121-129
We aimed to explore the population dynamics of snail in 3 sites of the White Nile in Sudan. More specifically, we aimed to investigate the annual patterns of snail populations that act as intermediate hosts of schistosomes and monthly snail infection rates and ecological characteristics presumably related to snail populations. We collected snails for 1 year monthly at 3 different shore sites in the vicinity of El Shajara along the White Nile river in Khartoum State, Sudan. In addition, we measured air and water temperatures, water turbidities, vegetation coverages, and water depths and current speeds. Most of the collected snails were Biomphalaria pfeifferi and Bulinus truncatus. The population densities of snails and their infection rates varied across survey sites. The collected snails liberated S. mansoni and S. haematobium cercariae as well as Amphistome and Echinostome cercariae. Infected snails were found during March-June. The ecological characteristics found to be associated with the absence of snails population were: high turbidity, deep water, low vegetation coverage (near absence of vegetation), high water temperature, and high current speed. To our knowledge, this is the first longitudinal study of the snail population and ecological characteristics in the main basin of the White Nile river.
10.Oral bacteria detection among children with cancer in a tertiary teaching hospital in Kuala Lumpur, Malaysia
Sidi Omar, S.F.N. ; Ngui, R. ; Ab Rahman, S.Z. ; Foo, J.C. ; Wang, Q.Y. ; Hassan, N.A. ; Lim, Y.A.L. ; Musa, S.
Tropical Biomedicine 2021;38(No.3):276-282
This study sought to determine the prevalence of pathogenic and non-pathogenic bacteria in the oral cavities of children with cancer. There were 68 paediatric patients with cancer who were included in this study. Oral swab samples from the dorsum of tongues and mouth floors of these patients were subjected to culture, staining, and molecular methods to detect the bacteria. The overall prevalence of gram-positive and gram-negative bacteria was 79.4% (54/68; 95% CI = 68.4 – 87.3) and 25% (17/68; 95% CI = 16.2 – 36.4), respectively. Streptococcus salivarius and Streptococcus parasanguinis were the predominant pathogenic grampositive bacteria, while Neisseria subflava and Neisseria perflava were the most common pathogenic gram-negative bacteria. The results revealed that the number of bacteria isolates recovered in patients receiving cancer treatment was higher (55.9%) than those who had not received treatment (16.2%). Therefore, more isolated pathogenic bacteria were observed post-therapy (54.4%). Pathogenic organisms can have significant implications on patient health. Awareness of the types of bacteria inhabiting the oral cavity is essential to predict and prevent dental problems, and their associated systemic complications. Findings on the diversity of oral microflora can also provide a better understanding of the aetiology of oral diseases in paediatric patients receiving cancer treatment.


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