Chinese Journal of Immunology 2010;26(4):320-324
doi:10.3969/j.issn.1000-484X.2010.04.008
Study on the family-based association Tim-1 promoter polymorphism with child allergic asthma
Qiwen WU ; Chun PU ; Pengcheng CAI ; Lihua HU
Keywords
Tim-1; Child allergic asthma; Single nucleotide polymorphism; Haplotype
Country
China
Language
Chinese
Abstract
Objective: To investigate the association between three single nucleotide polymorphisms-2562G>A,-416C>G and-232G>A in Tim-3(T cell immunoglobulin domain and mucin domain protein 3)gene promoter region and child allergic asthma in Chinese Han population by using family-based association study.Methods: Genotypes of 3 SNPs(-2562G>A,-416C>G and-232G>A)in 118 allergic asthma nuclear pedigrees were analyzed by restriction fragment length polymorphism.The genotype data were analyzed by using the family-based transmission disequilibrium test(TDT).Haplotypes and their frequencies were established and analyzed by TRANSMIT software.Results: ①No transmission disequilibrium was found at the-2562G>A and-232G>A sites from heterozygous parents onto patients in 118 trios analyzed by TDT(P>0.05);However,at the-416 C>G locus,the observed values of G allele from heterozygous parents to offspring were significantly higher than the expected values(P<0.05)②The haplotype TDT analysis by TRANSMIT showed the observed and the expected value in GCA and GGA haplotype from parents to the affected offsprings had significant difference respectively(P<0.05).The Global X~2 test results also showed that Tim-1 haplotype were associated with child allergic asthma(X~2 = 17.26, P<0.01).Conclusion: Tim-1 gene promoter-416C>G locus are associated with allergic asthma susceptibility in Hubei Chinese Han population and the haplotypes constructed by-416C>G are also associated with asthma.Tim-1 genetic polymorphism may play an important role in the pathogenesis of asthma.
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