Analysis of Serum Transcriptome Characteristics of Patients with Yin and Yang Syndromes of Acute Ischemic Stroke
10.13422/j.cnki.syfjx.20190957
- VernacularTitle: 急性缺血性中风阴阳类证的血清转录组学特征分析
- Author:
Wen-chen LIU
1
;
Guo-ming LI
2
;
Chun-hua HE
1
;
Li-jun QIAO
2
;
Xin SHEN
1
;
Xiao CHENG
2
;
Ye-feng CAI
2
;
Yan HUANG
2
Author Information
1. College of Second Clinical Medical, Guangzhou University of Chinese Medicine, Guangzhou 510120, China
2. Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou 510120, China
- Publication Type:Research Article
- Keywords:
acute ischemic stroke;
Yin syndrome;
Yang syndrome;
long non-coding RNA;
microRNA;
messenger RNA;
transcriptomics
- From:
Chinese Journal of Experimental Traditional Medical Formulae
2019;25(15):122-130
- CountryChina
- Language:Chinese
-
Abstract:
Objective:To obtain the regulatory relationship between genes by screening the differentially expressed long non-coding ribonucleic acid(lncRNA), microRNA(miRNA) and messenger RNA(mRNA) in serum of patients with Yin and Yang syndromes of acute ischemic stroke, and to discuss the material basis and biological mechanism of formation of Yin and Yang syndromes of acute ischemic stroke from the transcriptome level. Method:The microarray chips were adopted to detect expression of lncRNA, mRNA and miRNA in serum of ischemic stroke patients with Yin and Yang syndromes and non-stroke subjects(10 cases each). Differential expression profiles related to Yin and Yang syndromes were selected by conjoint analysis. Further, the obtained differential genes were subjected to antisense lncRNA and mRNA co-expression analysis, gene ontology(GO) and Kyoto encyclopedia of genes and genomes(KEGG) functional pathway analysis, and the intergenic regulatory relationship was obtained to predict the target genes of lncRNA. Partial differential genes in 40 patients(10 with Yang syndrome and 30 with Yin syndrome) were verified by real-time fluorescence quantitative polymerase chain reaction(Real-time PCR). Result:The expression of 227 lncRNA, 54 mRNA and 4 miRNA were closely related to Yang syndrome, 394 lncRNA and 206 mRNA were closely related to Yin syndrome. Antisense lncRNA RP11-647P12.1 and RP11-677M14.2 may regulate the expression of neuron-derived neurotrophic factor(NDNF) and neurogranin(NRGN) by up-regulating the expression level in Yang syndrome. The differential expression of mRNA between Yin syndrome and Yang syndrome was mainly related to neurotransmitter receptor activity regulation, endocrine hormone regulation, inflammatory response, renin-angiotensin system and other pathways. Conclusion:There are differences in the expression profiles of lncRNA, miRNA and mRNA between Yin syndrome and Yang syndrome in acute ischemic stroke, which may be regulated by multiple pathways, such as blood pressure regulation, adrenergic receptor regulation, renin-angiotensin system and γ-aminobutyric acid(GABA). The transcriptome characteristics provide scientific basis for studying the biological basis of Yin syndrome and Yang syndrome in acute ischemic stroke.
