Molecular characterization analyses of a human metapneumovirus outbreak in Gongshu District of Hangzhou City
10.19428/j.cnki.sjpm.2026.250315
- VernacularTitle:杭州市拱墅区一起人偏肺病毒疫情的分子特征分析
- Author:
Jianyi LIU
1
;
Chenye ZHANG
1
;
Lei ZHAO
1
;
Huiqun SHUAI
1
;
Huanhuan YU
1
;
Qingyu SUN
1
;
Fei LU
1
;
Shengjun XI
1
Author Information
1. Gongshu District Center for Disease Control and Prevention (Gongshu District Health Supervision Institute), Hangzhou, Zhejiang 310022, China
- Publication Type:Journal Article
- Keywords:
human metapneumovirus;
respiratory tract infection;
molecular characterization;
phylogenetic tree analysis
- From:
Shanghai Journal of Preventive Medicine
2026;38(3):216-220
- CountryChina
- Language:Chinese
-
Abstract:
ObjectiveTo analyze the epidemiological and etiological characteristics of a cluster of human metapneumovirus (HMPV) infection in a kindergarten in Gongshu District of Hangzhou City in May 2024, and to provide reference for the prevention and control of similar outbreaks. MethodsAn on-site investigation was conducted using an epidemiological case investigation form. Throat swab specimens collected from cases were screened for 13 respiratory pathogens using real-time fluorescent polymerase chain reaction (PCR). For HMPV nucleic acid positive specimens, the F gene of HMPV was used as the target gene for amplification and sequencing. The sequencing results were then compared with sequences in GenBank database to determine the virus subtypes and perform phylogenetic analyses. ResultsThe outbreak occurred in a kindergarter junior class with a total of 28 preschoolers and 3 teachers and childcare workers. A total of 11 cases (10 preschoolers and 1 teacher) were identified, including 8 male cases and 3 female cases. Clinical manifestations included fever in all 11 cases (100.00%), cough in 8 cases (72.72%), catarrhal symptoms in 4 cases (36.36%), and headache in 3 cases (27.27%). All symptoms were mild, and no severe cases were observed. A total of 11 throat swab samples were collected. Real-time fluorescent PCR test results showed that 3 samples were positive for HMPV nucleic acid, 2 samples were positive for both HMPV and Streptococcus pneumoniae, and 1 sample was positive for both HMPV and rhinovirus. The sequences of the 6 HMPV nucleic acid positive specimens were amplified and analyzed using specific primers, and all were determined to be HMPV subtype A2b. The F gene fragment sequence showed the highest similarity to PV081665.1/Brazil/2024 (99.65%), and also exhibited high similarity to PP683455.1/Indonesia/2021 (99.48%), PV016275.1/Beijing/2024 (99.31%), and PV052230.1/USA/2024 (99.13%). ConclusionThis cluster of acute respiratory tract infection was caused by HMPV subtype A2b, with co-infection of rhinovirus and Streptococcus pneumoniae. The F gene fragment sequences of the HMPV in this outbreak were highly homologous to those of the A2b strains isolated from Brazil, Beijing, Indonesia, and the the United States.
