Preliminary analysis of mRNA m7G modifications in human Adenocarcinoma of esophagogastric junction.
10.3760/cma.j.cn511374-20240724-00408
- Author:
Ziyan LIU
1
;
Xiaoyan WANG
;
Binbin HU
;
Shiqi ZHANG
;
Yakun LANG
;
Yu FAN
Author Information
1. Institute of Tumor Research, People's Hospital Affiliated to Jiangsu University, Zhenjiang, Jiangsu 212002, China. yuf12345@ujs.edu.cn; 843969868@qq.com.
- Publication Type:Journal Article
- MeSH:
Humans;
RNA, Messenger/metabolism*;
Adenocarcinoma/pathology*;
Esophagogastric Junction/metabolism*;
Esophageal Neoplasms/metabolism*;
Gene Expression Regulation, Neoplastic;
Female;
Male;
Middle Aged;
DNA Methylation;
Methyltransferases/metabolism*;
Stomach Neoplasms/genetics*
- From:
Chinese Journal of Medical Genetics
2025;42(2):187-197
- CountryChina
- Language:Chinese
-
Abstract:
OBJECTIVE:To explore the potential role of mRNA m7G modification in the pathogenesis of human adenocarcinoma of esophagogastric junction (AEG).
METHODS:Pathological tissue specimens from four AEG patients who underwent surgical treatment at the People's Hospital Affiliated to Jiangsu University between 2018 and 2019 were selected. Tumor tissues and adjacent normal tissues were collected from these patients. RNA was extracted from both tissue types and subjected to m7G methylated RNA immunoprecipitation sequencing (m7G-MeRIP-seq) to analyze the patterns of m7G modification, the characteristics of differential m7G modification sites, the differentially expressed mRNA, and the correlation between m7G modification and mRNA expression levels. Differential m7G-modified genes (MSH6, BRCA1, and SOX9) were further validated using methylated RNA immunoprecipitation quantitative PCR (MeRIP-qPCR), while the expression of METTL1 and WDR4 genes was examined by real-time quantitative PCR (RT-qPCR). This study was approved by the Medical Ethics Committee of the People's Hospital Affiliated to Jiangsu University (Ethics No. 20150083).
RESULTS:m7G-MeRIP-seq analysis revealed that m7G modifications in both AEG and adjacent normal tissues were predominantly located in the GC-rich region surrounding the internal start codon of mRNA. Differential m7G modification sites between the two groups were closely associated with cancer-related genes. mRNA library analysis showed that differentially expressed mRNA were predominantly upregulated in AEG tissues and downregulated in adjacent normal tissues. Cross-analysis indicated that genes with hypermethylation tended to exhibit upregulated expression, while genes with hypomethylation were typically downregulated in AEG tissues. MeRIP-qPCR validation confirmed that the mRNA expression of MSH6, BRCA1, and SOX9 were significantly upregulated in AEG tissues compared to adjacent normal tissues (AEG vs. normal, P < 0.05). RT-qPCR results demonstrated that the mRNA expression levels of METTL1 and WDR4 were also upregulated in AEG tissues (AEG vs. normal, P < 0.000 5).
CONCLUSION:These findings suggest that mRNA m7G modification plays a significant role in the development of AEG. Furthermore, proteins as METTL1 and WDR4 may facilitate AEG progression by regulating mRNA m7G modification. These results provide valuable insights into the molecular mechanisms underlying AEG and may inform future therapeutic strategies for this malignancy.
