The Genetic Association between CDKN1A and Heart Failure: Genome-Wide Exploration of m 6A-SNPs and Mendelian Randomization.
- Author:
Ziyi YANG
1
;
Zhennan LIN
1
;
Xiaotong NING
1
;
Xingbo MO
2
;
Laiyuan WANG
1
;
Xiangfeng LU
1
;
Shufeng CHEN
1
Author Information
- Publication Type:Journal Article
- Keywords: Expression quantitative trait locus; Genome-wide association study; Heart failure; Mendelian randomization; N6-methyladenosine modification
- MeSH: Humans; Polymorphism, Single Nucleotide; Heart Failure/genetics*; Mendelian Randomization Analysis; Genome-Wide Association Study; Cyclin-Dependent Kinase Inhibitor p21/metabolism*; Quantitative Trait Loci; Adenosine/metabolism*; Male; Female; Genetic Predisposition to Disease
- From: Biomedical and Environmental Sciences 2024;37(12):1397-1413
- CountryChina
- Language:English
-
Abstract:
OBJECTIVE:N6-methyladenosine (m 6A) is a common epigenetic modification in eukaryotes. In this study, we explore the potential impact of m 6A-associated single nucleotide polymorphisms (m 6A-SNPs) on heart failure (HF).
METHODS:Data from genome-wide association studies (GWAS) investigating HF in humans and from m 6A-SNPs datasets were used to identify HF-associated m 6A-SNPs. Their functions were explored using expression quantitative trait locus (eQTL), gene expression, and gene enrichment analyses. Mediation protein quantitative trait locus (pQTL)-Mendelian randomization (MR) was used to investigate the potential mechanism between critical protein levels and risk factors for HF.
RESULTS:We screened 44 HF-associated m 6A-SNPs, including 10 m 6A-SNPs that showed eQTL signals and differential expressions in HF. The SNP rs1801270 in CDKN1A showed the strongest association with HF ( P = 7.75 × 10 -6). Additionally, MR verified the genetic association between the CDKN1A protein and HF, as well as the mediating effect of blood pressure (BP) in this pathway. Higher circulating level of CDKN1A was associated with a lower risk of HF (odds ratio [ OR] = 0.82, 95% confidence interval [ CI]: 0.69 to 0.99). The proportions of hypertension, systolic BP, and diastolic BP were 48.10%, 28.94%, and 18.02%, respectively. Associations of PDIA6 ( P = 1.30 × 10 -2) and SMAD3 ( P = 4.80 × 10 -2) with HF were also detected.
CONCLUSION:Multiple HF-related m 6A-SNPs were identified in this study. Genetic associations of CDKN1A and other proteins with HF and its risk factors were demonstrated, providing new ideas for further exploration of the molecular mechanisms of HF.
