Genetic diversity analysis and DNA fingerprinting of Artemisia argyi germplasm resources based on EST-SSR molecular markers.
10.19540/j.cnki.cjcmm.20250216.102
- Author:
Yu-Yang MA
1
;
Chang-Jie CHEN
1
;
Ming-Xing WANG
1
;
Yan FANG
1
;
Yu-Huan MIAO
2
;
Da-Hui LIU
2
Author Information
1. Pharmacy Faculty, Hubei University of Chinese Medicine Wuhan 430065, China.
2. Pharmacy Faculty, Hubei University of Chinese Medicine Wuhan 430065, China Hubei Shizhen Laboratory Wuhan 430065, China.
- Publication Type:Journal Article
- Keywords:
Artemisia argyi;
DNA fingerprinting;
EST-SSR;
cluster analysis;
genetic diversity
- MeSH:
Artemisia/classification*;
Microsatellite Repeats;
Genetic Variation;
Expressed Sequence Tags;
DNA Fingerprinting;
Phylogeny;
Polymorphism, Genetic;
DNA, Plant/genetics*;
Genetic Markers
- From:
China Journal of Chinese Materia Medica
2025;50(9):2356-2364
- CountryChina
- Language:Chinese
-
Abstract:
This study investigates the genetic diversity and evolutionary relationships of different Artemisia argyi germplasm resources to provide a basis for germplasm identification, variety selection, and resource protection. A total of 192 germplasm resources of A. argyi were studied, and EST-based simple sequence repeat(EST-SSR) primers were designed based on transcriptomic data of A. argyi. Polymerase chain reaction(PCR) amplification was performed on these resources, followed by fluorescence capillary electrophoresis to detect genetic diversity and construct DNA fingerprints. From 197 pairs of primers designed, 28 pairs with polymorphic and clear bands were selected. A total of 278 alleles were detected, with an average of 9.900 0 alleles per primer pair and an average effective number of alleles of 1.407 2. The Shannon's diversity index(I) for the A. argyi germplasm resources ranged from 0.148 1 to 0.418 0, with an average of 0.255 7. The polymorphism information content(PIC) ranged from 0.454 5 to 0.878 0, with an average of 0.766 9, showing high polymorphism. Cluster analysis divided the A. argyi germplasm resources into three major groups: Group Ⅰ contained 136 germplasm samples, Group Ⅱ contained 45, and Group Ⅲ contained 11. Principal component analysis also divided the resources into three groups, which was generally consistent with the clustering results. Mantel test results showed that the genetic variation in A. argyi populations was to some extent influenced by geographic distance, but the effect was minimal. Structure analysis showed that 190 germplasm materials had Q≥ 0.6, indicating that these germplasm materials had a relatively homogeneous genetic origin. Furthermore, 8 core primer pairs were selected from the 28 designed primers, which could distinguish various germplasm types. Using these 8 core primers, DNA fingerprints for the 192 A. argyi germplasm resources were successfully constructed. EST-SSR molecular markers can be used to study the genetic diversity and phylogenetic relationships of A. argyi, providing theoretical support for the identification and molecular-assisted breeding of A. argyi germplasm resources.
