Selection and validation of reference genes for quantitative real-time PCR analysis in Tujia medicine Xuetong.
10.19540/j.cnki.cjcmm.20241113.101
- Author:
Qian XIAO
1
;
Chen-Si TAN
1
;
Jiang ZENG
1
;
Yuan-Shu XU
1
;
Tian-Hao FU
1
;
Lu-Yun NING
1
;
Wei WANG
1
Author Information
1. School of Pharmacy, Hunan University of Chinese Medicine Changsha 410208, China Traditional Chinese Medicine and Ethnomedicine Innovation & Development International Laboratory,Hunan University of Chinese Medicine Changsha 410208, China.
- Publication Type:Journal Article
- Keywords:
Kadsura heteroclita;
UBC;
quantitative real-time PCR;
reference gene
- MeSH:
Real-Time Polymerase Chain Reaction/methods*;
Reference Standards;
Gene Expression Regulation, Plant;
Gene Expression Profiling;
Plant Proteins/metabolism*;
Drugs, Chinese Herbal
- From:
China Journal of Chinese Materia Medica
2025;50(3):682-692
- CountryChina
- Language:Chinese
-
Abstract:
Tujia ethnic group medicine Xuetong is derived from Kadsura heteroclita, the stem of which has the medicinal value for anti-rheumatoid arthritis, liver protection, anti-tumor, anti-oxidation effects, and has been widely used in Hunan and Guangdong in China. The selection of reliable and stable reference genes is the basis for subsequent molecular research on K. heteroclita. In this study, GAPDH, TUA, Actin, UBQ, EF-1α, 18S-rRNA, CYP, UBC, TUB, H2A, and RPL were selected as candidate reference genes in Kadsura heteroclita. The gene expression levels of the 11 candidate reference genes of K. heteroclita in its 6 different parts(stem-inside of the cambium, stem-outside of the cambium, fruit, flower, root, and leaf) and under different intervention conditions [drought stress, salt stress, and methyl jasmonate(MeJA) treatment] were detected by quantitative real-time polymerase chain reaction(qRT-PCR). The expression stability of the 11 candidate reference genes was comprehensively analyzed and evaluated by geNorm, NormFinder, ΔCT algorithm, and RefFinder software. The results showed that the expression of UBC and RPL was relatively stable in 6 different parts, and UBC and GAPDH genes were relatively stable under different intervention conditions. To verify the reliability of reference genes for K. heteroclita, this study further examined the relative expression levels of KhFPS, KhIDI, KhCAS, KhSQE, KhSQS, KhSQS-2, KhHMGS, KhHMGR, KhMVD, KhMVK, KhDXR, KhDXS, KhPMVK, and KhGGPS in different parts and under different intervention conditions, which might relate to the synthesis of the main component(Xuetongsu) of K. heteroclita. The results showed that with UBC and RPL or UBC and GAPDH as the reference genes, the expression trends of these 14 genes were basically consistent in different parts or under different intervention conditions for K. heteroclita. In conclusion, UBC can be used as a reference gene of K. heteroclita for its different parts and different intervention conditions, which lays a foundation for further research on the biosynthetic pathway of main components in K. heteroclita.
