Whole genome analysis of two strains of Acinetobacter baumannii encoding class B and Class D carbapenemases
- Author:
WANG Xiao
;
XU Tongsheng
;
YOU Shuqi
- Publication Type:Case Reports
- Keywords:
Acinetobacter baumannii;
carbapenemase;
plasmids;
whole genome sequencing;
Shanghai
- From:
China Tropical Medicine
2024;24(11):1390-
- CountryChina
- Language:Chinese
-
Abstract:
Objective To elucidate the molecular characteristics of two Acinetobacter baumannii strains producing NDM-1, OXA-23, and OXA-51 carbapenemases through whole genome sequencing technology, explore the mechanism of drug resistance, evolutionary pathways, and transmission potential, and provide data support for the formulation of clinical infection control strategies. Methods Two strains of Acinetobacter baumannii producing class B and class D carbapenemases, sourced from the ICU environment of two hospitals in Shanghai, were selected as study subjects. Next-generation sequencing technology was used to obtain the whole genome sequences of the strains. The whole genome map of the strains was drawn based on GCskew and Prokka tools on the Proksee website. Drug susceptibility experiments and BacWGSTdb 2.0 online analysis platform were used to screen for drug resistance genes to analyze the drug resistance of strains. Virulence genes, multilocus sequence typing (MLST), capsule serotype, and plasmid migration were evaluated based on the VFDB database, PubMLST database, OriTfinder, Kptive, and other tools, and an evolutionary tree was drawn by Neighbor-Joining method. Results Whole genome data showed that both strains belong to ST164_Pasteur/ST1418_Oxford-KL47/OCL5 type. All of them carry seven resistance genes (blaADC-25, blaCARB-5, blaCARB-16, blaCARB-49, blaNDM-1, blaOXA-23, blaOXA-91) and non-mobile plasmids. They possess 45 virulence genes related to outer membrane proteins and efflux pumps and are closely related to 5 strains from Malaysia and China (Changsha, Nanchang, and Hangzhou). Conclusions For the first time, the coexistence of OXA-23, OXA-51, NDM-1 producing Acinetobacter baumannii has been detected in the ICU environment in Shanghai, potentially posing a serious threat to public health. It is necessary to strengthen the monitoring and research of such strains to develop effective prevention and control strategies.
- Full text:202511121022161822215.Whole genome analysis of two strains of Acinetobacter baumannii encoding class B and Class D carbapenemases.pdf
