1.My viewpoints on strategies of international dissemination and development Of traditional Chinese medical culture
International Journal of Traditional Chinese Medicine 2010;32(3):215-216
The development of the international spread of Chinese medicine facing the serious challenge of the global competition with the tentacles of Chinese medica;communication in the world are spreading even wider.How to make countermeasures.seize an opportunity and receive the challenge to improve international competitiveness effectively and promote sound and rapid development of the internationalization of Chinese medicine have become the focus of common attention.In this paper,I'll discuss some problems in the development of the international communication of the culture of Chinese medicine such as the main task and the principles.
2.Advances of the matrix assisted laser desorption ionization-time of flight-mass spectrometry in lung cancer
Journal of International Oncology 2014;41(5):344-347
Matrix-assisted laser desorption ionization-time of flight-mass spectrometry (MALDI-TOF-MS) is a kind of the latest mass spectrometry,which has many advantages including high throughput,rapidity,excellent repeatability and high sensitivity.It has been an important tool for both the research and clinical application in lung cancer and has an optimistic prospect in the many fields,such as early diagnosis,screening and evaluation of therapeutic effect.
3.Structure analysis of the extracellular domain reveals disulfide bond forming-protein properties of Mycobacterium tuberculosis Rv2969c.
Lu WANG ; Jun LI ; Xiangxi WANG ; Wu LIU ; Xuejun C ZHANG ; Xuemei LI ; Zihe RAO
Protein & Cell 2013;4(8):628-640
Disulfide bond-forming (Dsb) protein is a bacterial periplasmic protein that is essential for the correct folding and disulfide bond formation of secreted or cell wallassociated proteins. DsbA introduces disulfide bonds into folding proteins, and is re-oxidized through interaction with its redox partner DsbB. Mycobacterium tuberculosis, a Gram-positive bacterium, expresses a DsbA-like protein ( Rv2969c), an extracellular protein that has its Nterminus anchored in the cell membrane. Since Rv2969c is an essential gene, crucial for disulfide bond formation, research of DsbA may provide a target of a new class of anti-bacterial drugs for treatment of M.tuberculosis infection. In the present work, the crystal structures of the extracellular region of Rv2969c (Mtb DsbA) were determined in both its reduced and oxidized states. The overall structure of Mtb DsbA can be divided into two domains: a classical thioredoxin-like domain with a typical CXXC active site, and an α-helical domain. It largely resembles its Escherichia coli homologue EcDsbA, however, it possesses a truncated binding groove; in addition, its active site is surrounded by an acidic, rather than hydrophobic surface. In our oxidoreductase activity assay, Mtb DsbA exhibited a different substrate specificity when compared to EcDsbA. Moreover, structural analysis revealed a second disulfide bond in Mtb DsbA, which is rare in the previously reported DsbA structures, and is assumed to contribute to the overall stability of Mtb DsbA. To investigate the disulphide formation pathway in M.tuberculosis, we modeled Mtb Vitamin K epoxide reductase (Mtb VKOR), a binding partner of Mtb DsbA, to Mtb DsbA.
Amino Acid Sequence
;
Bacterial Proteins
;
chemistry
;
metabolism
;
Catalytic Domain
;
Crystallography, X-Ray
;
Disulfides
;
chemistry
;
Escherichia coli
;
metabolism
;
Escherichia coli Proteins
;
chemistry
;
metabolism
;
Molecular Docking Simulation
;
Molecular Sequence Data
;
Mycobacterium tuberculosis
;
metabolism
;
Oxidation-Reduction
;
Protein Disulfide-Isomerases
;
chemistry
;
metabolism
;
Protein Folding
;
Protein Structure, Tertiary
;
Sequence Alignment
;
Static Electricity
4.The past, present and future of heart transplantation
Zihe ZHENG ; Zheng XU ; Xinfan LIN ; Tao WANG ; Wei WANG ; Xin JIANG ; Xiaofu DAI
Organ Transplantation 2023;14(2):227-
Heart transplantation is one of the most effective strategies to treat end-stage heart failure. Multiple challenges, such as difficulty in preservation of heart allograft, rejection and postoperative complications, emerge in heart allotransplantation. After decades of research and practice, most problems have been resolved. Nevertheless, the shortage of donor organs has become increasingly prominent. To alleviate the shortage of donor organs, artificial heart and heart xenotransplantation have captivated attention, and obtained significant progress in recent years. The application of artificial heart in clinical practice has significantly enhanced the survival rate of patients with end-stage heart failure, which is expected to become the standard treatment for end-stage heart failure. Heart xenotransplantation still faces many challenges, which is still far from clinical application. In this article, the history of heart transplantation, development of heart allotransplantation, use of artificial heart and research progress on heart xenotransplantation were reviewed, and the future development direction of heart transplantation was predicted.
5.TIM-1 acts a dual-attachment receptor for Ebolavirus by interacting directly with viral GP and the PS on the viral envelope.
Shuai YUAN ; Lei CAO ; Hui LING ; Minghao DANG ; Yao SUN ; Xuyuan ZHANG ; Yutao CHEN ; Liguo ZHANG ; Dan SU ; Xiangxi WANG ; Zihe RAO
Protein & Cell 2015;6(11):814-824
Ebolavirus can cause hemorrhagic fever in humans with a mortality rate of 50%-90%. Currently, no approved vaccines and antiviral therapies are available. Human TIM1 is considered as an attachment factor for EBOV, enhancing viral infection through interaction with PS located on the viral envelope. However, reasons underlying the preferable usage of hTIM-1, but not other PS binding receptors by filovirus, remain unknown. We firstly demonstrated a direct interaction between hTIM-1 and EBOV GP in vitro and determined the crystal structures of the Ig V domains of hTIM-1 and hTIM-4. The binding region in hTIM-1 to EBOV GP was mapped by chimeras and mutation assays, which were designed based on structural analysis. Pseudovirion infection assays performed using hTIM-1 and its homologs as well as point mutants verified the location of the GP binding site and the importance of EBOV GP-hTIM-1 interaction in EBOV cellular entry.
Ebolavirus
;
metabolism
;
Flow Cytometry
;
Glycoproteins
;
metabolism
;
Hepatitis A Virus Cellular Receptor 1
;
Hepatitis A Virus Cellular Receptor 2
;
Humans
;
Membrane Glycoproteins
;
metabolism
;
Membrane Proteins
;
metabolism
;
Protein Binding
;
Receptors, Virus
;
metabolism
;
Surface Plasmon Resonance
;
Viral Envelope Proteins
;
metabolism
;
Viral Proteins
;
metabolism
6.An open conformation determined by a structural switch for 2A protease from coxsackievirus A16.
Yao SUN ; Xiangxi WANG ; Shuai YUAN ; Minghao DANG ; Xuemei LI ; Xuejun C ZHANG ; Zihe RAO
Protein & Cell 2013;4(10):782-792
Coxsackievirus A16 belongs to the family Picornaviridae, and is a major agent of hand-foot-and-mouth disease that infects mostly children, and to date no vaccines or antiviral therapies are available. 2A protease of enterovirus is a nonstructural protein and possesses both self-cleavage activity and the ability to cleave the eukaryotic translation initiation factor 4G. Here we present the crystal structure of coxsackievirus A16 2A protease, which interestingly forms hexamers in crystal as well as in solution. This structure shows an open conformation, with its active site accessible, ready for substrate binding and cleavage activity. In conjunction with a previously reported "closed" state structure of human rhinovirus 2, we were able to develop a detailed hypothesis for the conformational conversion triggered by two "switcher" residues Glu88 and Tyr89 located within the bll2-cII loop. Substrate recognition assays revealed that amino acid residues P1', P2 and P4 are essential for substrate specificity, which was verified by our substrate binding model. In addition, we compared the in vitro cleavage efficiency of 2A proteases from coxsackievirus A16 and enterovirus 71 upon the same substrates by fluorescence resonance energy transfer (FRET), and observed higher protease activity of enterovirus 71 compared to that of coxsackievirus A16. In conclusion, our study shows an open conformation of coxsackievirus A16 2A protease and the underlying mechanisms for conformational conversion and substrate specificity. These new insights should facilitate the future rational design of efficient 2A protease inhibitors.
Coxsackievirus Infections
;
virology
;
Crystallography, X-Ray
;
Cysteine Endopeptidases
;
chemistry
;
genetics
;
Fluorescence Resonance Energy Transfer
;
Hand, Foot and Mouth Disease
;
enzymology
;
pathology
;
virology
;
Humans
;
Picornaviridae
;
chemistry
;
enzymology
;
genetics
;
Protein Conformation
;
Structure-Activity Relationship
;
Substrate Specificity
;
Viral Proteins
;
chemistry
;
genetics
7.Crystal structures and biochemical studies of human lysophosphatidic acid phosphatase type 6.
Jun LI ; Yu DONG ; Xingru LÜ ; Lu WANG ; Wei PENG ; Xuejun C ZHANG ; Zihe RAO
Protein & Cell 2013;4(7):548-561
Lysophosphatidic acid (LPA) is an important bioactive phospholipid involved in cell signaling through Gprotein-coupled receptors pathways. It is also involved in balancing the lipid composition inside the cell, and modulates the function of lipid rafts as an intermediate in phospholipid metabolism. Because of its involvement in these important processes, LPA degradation needs to be regulated as precisely as its production. Lysophosphatidic acid phosphatase type 6 (ACP6) is an LPA-specific acid phosphatase that hydrolyzes LPA to monoacylglycerol (MAG) and phosphate. Here, we report three crystal structures of human ACP6 in complex with malonate, L-(+)-tartrate and tris, respectively. Our analyses revealed that ACP6 possesses a highly conserved Rossmann-foldlike body domain as well as a less conserved cap domain. The vast hydrophobic substrate-binding pocket, which is located between those two domains, is suitable for accommodating LPA, and its shape is different from that of other histidine acid phosphatases, a fact that is consistent with the observed difference in substrate preferences. Our analysis of the binding of three molecules in the active site reveals the involvement of six conserved and crucial residues in binding of the LPA phosphate group and its catalysis. The structure also indicates a water-supplying channel for substrate hydrolysis. Our structural data are consistent with the fact that the enzyme is active as a monomer. In combination with additional mutagenesis and enzyme activity studies, our structural data provide important insights into substrate recognition and the mechanism for catalytic activity of ACP6.
Amino Acid Sequence
;
Catalytic Domain
;
Crystallography, X-Ray
;
Humans
;
Malonates
;
metabolism
;
Models, Molecular
;
Molecular Sequence Data
;
Nitrophenols
;
metabolism
;
Organophosphorus Compounds
;
metabolism
;
Phosphoric Monoester Hydrolases
;
chemistry
;
classification
;
metabolism
;
Tartrates
;
metabolism
;
Water
;
metabolism
8.Research Progress on Influence of DNA Methylation on Signal Pathways Related to Invasion and Metastasis of Nasopharyngeal Carcinoma
Zihe WANG ; Zengliang LI ; Xuzhe FANG ; Jin ZHU
Cancer Research on Prevention and Treatment 2022;49(9):956-960
Nasopharyngeal carcinoma (NPC) is one of the most common malignant tumors of the head and neck region. NPC has the characteristics of insidious onset, strong invasiveness and early lymph node metastasis. A variety of signaling pathways play a role in the invasion and metastasis of nasopharyngeal carcinoma, but the specific mechanism has not yet been fully elucidated. Recent studies have found that DNA methylation of nasopharyngeal carcinoma-related genes can affect the invasion and metastasis of nasopharyngeal carcinoma through a variety of signaling pathways including Wnt/β-catenin, PI3K/AKT and MAPK signaling pathways. This article reviews the specific mechanism of DNA methylation affecting the invasion and metastasis of nasopharyngeal carcinoma through the above-mentioned signaling pathways.
9.Molecular mechanism of SCARB2-mediated attachment and uncoating of EV71.
Minghao DANG ; Xiangxi WANG ; Quan WANG ; Yaxin WANG ; Jianping LIN ; Yuna SUN ; Xuemei LI ; Liguo ZHANG ; Zhiyong LOU ; Junzhi WANG ; Zihe RAO
Protein & Cell 2014;5(9):692-703
Unlike the well-established picture for the entry of enveloped viruses, the mechanism of cellular entry of non-enveloped eukaryotic viruses remains largely mysterious. Picornaviruses are representative models for such viruses, and initiate this entry process by their functional receptors. Here we present the structural and functional studies of SCARB2, a functional receptor of the important human enterovirus 71 (EV71). SCARB2 is responsible for attachment as well as uncoating of EV71. Differences in the structures of SCARB2 under neutral and acidic conditions reveal that SCARB2 undergoes a pivotal pH-dependent conformational change which opens a lipid-transfer tunnel to mediate the expulsion of a hydrophobic pocket factor from the virion, a pre-requisite for uncoating. We have also identified the key residues essential for attachment to SCARB2, identifying the canyon region of EV71 as mediating the receptor interaction. Together these results provide a clear understanding of cellular attachment and initiation of uncoating for enteroviruses.
Acids
;
chemistry
;
Amino Acid Sequence
;
Animals
;
Capsid Proteins
;
chemistry
;
genetics
;
metabolism
;
Enterovirus A, Human
;
genetics
;
metabolism
;
physiology
;
HEK293 Cells
;
Host-Pathogen Interactions
;
Humans
;
Hydrogen-Ion Concentration
;
Lysosome-Associated Membrane Glycoproteins
;
chemistry
;
genetics
;
metabolism
;
Molecular Docking Simulation
;
Molecular Sequence Data
;
Protein Binding
;
Protein Conformation
;
Protein Interaction Mapping
;
Protein Structure, Tertiary
;
RNA, Viral
;
genetics
;
metabolism
;
Receptors, Scavenger
;
chemistry
;
genetics
;
metabolism
;
Sequence Homology, Amino Acid
;
Sf9 Cells
;
Static Electricity
;
Virion
;
genetics
;
metabolism
;
Virus Attachment
10.A structural view of the antibiotic degradation enzyme NDM-1 from a superbug.
Yu GUO ; Jing WANG ; Guojun NIU ; Wenqing SHUI ; Yuna SUN ; Honggang ZHOU ; Yaozhou ZHANG ; Cheng YANG ; Zhiyong LOU ; Zihe RAO
Protein & Cell 2011;2(5):384-394
Gram-negative Enterobacteriaceae with resistance to carbapenem conferred by New Delhi metallo-β-lactamase 1 (NDM-1) are a type of newly discovered antibioticresistant bacteria. The rapid pandemic spread of NDM-1 bacteria worldwide (spreading to India, Pakistan, Europe, America, and Chinese Taiwan) in less than 2 months characterizes these microbes as a potentially major global health problem. The drug resistance of NDM-1 bacteria is largely due to plasmids containing the blaNDM-1 gene shuttling through bacterial populations. The NDM-1 enzyme encoded by the blaNDM-1 gene hydrolyzes β-lactam antibiotics, allowing the bacteria to escape the action of antibiotics. Although the biological functions and structural features of NDM-1 have been proposed according to results from functional and structural investigation of its homologues, the precise molecular characteristics and mechanism of action of NDM-1 have not been clarified. Here, we report the three-dimensional structure of NDM-1 with two catalytic zinc ions in its active site. Biological and mass spectroscopy results revealed that D-captopril can effectively inhibit the enzymatic activity of NDM-1 by binding to its active site with high binding affinity. The unique features concerning the primary sequence and structural conformation of the active site distinguish NDM-1 from other reported metallo-β-lactamases (MBLs) and implicate its role in wide spectrum drug resistance. We also discuss the molecular mechanism of NDM-1 action and its essential role in the pandemic of drug-resistant NDM-1 bacteria. Our results will provide helpful information for future drug discovery targeting drug resistance caused by NDM-1 and related metallo-β-lactamases.
Amino Acid Sequence
;
Anti-Bacterial Agents
;
metabolism
;
Binding Sites
;
Captopril
;
chemistry
;
pharmacology
;
Catalytic Domain
;
Crystallography, X-Ray
;
Drug Resistance, Bacterial
;
Enterobacteriaceae
;
enzymology
;
Molecular Sequence Data
;
Sequence Alignment
;
Sequence Homology, Amino Acid
;
beta-Lactamases
;
chemistry
;
metabolism