1.Clinical analysis of 39 cases of multiple primary colorectal carcinoma.
Jinjin FU ; Zaiwei HUANG ; Yinghao LIN ; Bing XIAO
Journal of Southern Medical University 2013;33(4):578-581
OBJECTIVETo investigate the clinical features and prognosis of multiple primary colorectal carcinoma (MPCC).
METHODSAmong the 1462 patients with colorectal cancer admitted in our department from January 2000 to December 2007, 39 patients with MPCC were identified based on the Warran and Gates MPC diagnosis criteria. The age of onset, 5-year survival rate, lesion location and therapies were analyzed retrospectively.
RESULTSThe incidence of MPCC was 2.67% (39/1462). Eighteen of the patients had synchronous carcinomas and 21 were diagnosed to have metachronous carcinomas. Most of the tumors were located in the left colon and rectum. The average age of onset was (61.02∓13.94) in these patients who had an overall 5-year survival rate of 61.76%. The patients with metachronous carcinomas had a better prognosis than those with synchronous carcinomas. The 5-year survival rate of 3 early-stage cases (TNM stage I) was 100% after radical surgery. Thirty advanced cases underwent radical surgery combined with adjuvant chemotherapy, and their 1-, 3- and 5-year survival rates were 93.33%, 83.33%, and 73.33%, respectively. The 1- and 3-year survival rates of 3 advanced cases undergoing palliative surgery and adjuvant chemotherapy were 66.67% and 0, respectively. The 1- and 3-year survival rates of another 3 advanced cases with palliative chemotherapy were 66.67% and 0, respectively.
CONCLUSIONEarly diagnosis and effective treatment can help prolong the survival of MPC patients. Surgical intervention and chemotherapy can improve the survival and prognosis of patients with advanced MPCC.
Adult ; Aged ; Aged, 80 and over ; Colorectal Neoplasms ; diagnosis ; pathology ; Female ; Humans ; Male ; Middle Aged ; Neoplasm Staging ; Neoplasms, Multiple Primary ; diagnosis ; pathology ; Prognosis ; Retrospective Studies ; Survival Rate
2.Construction of a online database for functional dyspepsia.
Zaiwei HUANG ; Liping CHEN ; Bing XIAO
Journal of Southern Medical University 2015;35(6):907-911
OBJECTIVETo establish a clinical database of functional dyspepsia for epidemiological researches and standardizing clinical diagnosis and treatment.
METHODSThe functional dyspepsia database was designed to incorporate the data from in-patients and out-patients with functional dyspepsia treated since July, 2013 and was constructed using Visual Studio. The patient data were collected using a customized case report form designed according to the Roman criteria III and the etiology, symptoms, and treatments of the patients. All the cases deemed ineligible were excluded. The database was displayed on a website and allowed online data entry, case searches and statistical analysis of the clinical parameters.
RESULTS AND CONCLUSIONThe established online database for functional dyspepsia contained data of the general information, clinical symptoms, psychological status, living habits, dietary habits, medical history, examination results, clinical diagnosis, treatment methods and courses, outcomes and data statistics. The database was fully functional and provided complete and standardized data of functional dyspepsia for clinical studies.
Databases, Factual ; Dyspepsia ; Humans
3.Application of genome-wide genechip for screening and identifying genes related to CD133(+)CD200(+) colorectal cancer stem cells.
Shanshan ZHANG ; Lixuan LI ; Zaiwei HUANG ; Xiaomin XIN ; Bing XIAO
Journal of Southern Medical University 2013;33(12):1787-1791
OBJECTIVETo screen and identity genes related to CD133(+)CD200(+) colorectal cancer stem cells.
METHODSThe two subpopulations of colorectal cancer cells, namely CD133(+)CD200(+) and CD133(-)CD200(-) cells, were sorted and verified by flow cytometry. The gene expression profiles of CD133(+)CD200(+)and CD133(-)CD200(-) colorectal cancer cells were examined using Affymetrix Human U133 Plus2.0 genome-wide genechip. The differentially expressed genes between the two cell subpopulations were analyzed to identify the genes responsible for the main effect in association with colorectal cancer stem cells. Real-time quantitative PCR was performed to confirm some of the differentially expressed genes identified by genechip.
RESULTSThe genechip result showed that 655 genes were differentially expressed in CD133(+)CD200(+) colorectal cancer stem cells by at least 3 folds, including 290 up-regulated and 365 down-regulated ones. Bioinformatics analysis and gene co-expression network building identified 3 genes (MDM2, PRKACG, and CACNA1G) with specific expression in CD133(+)CD200(+) colorectal cancer stem cells, and this result was confirmed by real-time quantitative PCR analysis.
CONCLUSIONA specific gene expression profile of colorectal cancer stem cells has been established through screening and identifying genes related to CD133(+)CD200(+)colorectal cancer stem cells by gene genechip technique, which provides a basis for further study of gene targeting therapy of colorectal cancer.
AC133 Antigen ; Antigens, CD ; genetics ; metabolism ; Colorectal Neoplasms ; genetics ; Flow Cytometry ; Gene Expression Profiling ; Gene Expression Regulation, Neoplastic ; Glycoproteins ; genetics ; metabolism ; Humans ; Neoplastic Stem Cells ; metabolism ; Oligonucleotide Array Sequence Analysis ; Peptides ; genetics ; metabolism ; Transcriptome
4.Application of genome-wide genechip for screening and identifying genes related to CD133+CD200+colorectal cancer stem cells
Shanshan ZHANG ; Lixuan LI ; Zaiwei HUANG ; Xiaomin XIN ; Bing XIAO
Journal of Southern Medical University 2013;(12):1787-1791
Objective To screen and identity genes related to CD133+CD200+ colorectal cancer stem cells. Methods The two subpopulations of colorectal cancer cells, namely CD133+CD200+ and CD133-CD200- cells, were sorted and verified by flow cytometry. The gene expression profiles of CD133 +CD200 +and CD133-CD200- colorectal cancer cells were examined using Affymetrix Human U133 Plus2.0 genome- wide genechip. The differentially expressed genes between the two cell subpopulations were analyzed to identify the genes responsible for the main effect in association with colorectal cancer stem cells. Real-time quantitative PCR was performed to confirm some of the differentially expressed genes identified by genechip. Results The genechip result showed that 655 genes were differentially expressed in CD133+CD200+colorectal cancer stem cells by at least 3 folds, including 290 up-regulated and 365 down-regulated ones. Bioinformatics analysis and gene co-expression network building identified 3 genes (MDM2, PRKACG, and CACNA1G) with specific expression in CD133+CD200+colorectal cancer stem cells, and this result was confirmed by real-time quantitative PCR analysis. Conclusion A specific gene expression profile of colorectal cancer stem cells has been established through screening and identifying genes related to CD133+CD200+colorectal cancer stem cells by gene genechip technique, which provides a basis for further study of gene targeting therapy of colorectal cancer.
5.Construction of a online database for functional dyspepsia
Zaiwei HUANG ; Liping CHEN ; Bing XIAO
Journal of Southern Medical University 2015;(6):907-911
Objective To establish a clinical database of functional dyspepsia for epidemiological researches and standardizing clinical diagnosis and treatment. Methods The functional dyspepsia database was designed to incorporate the data from in-patients and out-patients with functional dyspepsia treated since July, 2013 and was constructed using Visual Studio. The patient data were collected using a customized case report form designed according to the Roman criteria III and the etiology, symptoms, and treatments of the patients. All the cases deemed ineligible were excluded. The database was displayed on a website and allowed online data entry, case searches and statistical analysis of the clinical parameters. Results and Conclusion The established online database for functional dyspepsia contained data of the general information, clinical symptoms, psychological status, living habits, dietary habits, medical history, examination results, clinical diagnosis, treatment methods and courses, outcomes and data statistics. The database was fully functional and provided complete and standardized data of functional dyspepsia for clinical studies.
6.Application of genome-wide genechip for screening and identifying genes related to CD133+CD200+colorectal cancer stem cells
Shanshan ZHANG ; Lixuan LI ; Zaiwei HUANG ; Xiaomin XIN ; Bing XIAO
Journal of Southern Medical University 2013;(12):1787-1791
Objective To screen and identity genes related to CD133+CD200+ colorectal cancer stem cells. Methods The two subpopulations of colorectal cancer cells, namely CD133+CD200+ and CD133-CD200- cells, were sorted and verified by flow cytometry. The gene expression profiles of CD133 +CD200 +and CD133-CD200- colorectal cancer cells were examined using Affymetrix Human U133 Plus2.0 genome- wide genechip. The differentially expressed genes between the two cell subpopulations were analyzed to identify the genes responsible for the main effect in association with colorectal cancer stem cells. Real-time quantitative PCR was performed to confirm some of the differentially expressed genes identified by genechip. Results The genechip result showed that 655 genes were differentially expressed in CD133+CD200+colorectal cancer stem cells by at least 3 folds, including 290 up-regulated and 365 down-regulated ones. Bioinformatics analysis and gene co-expression network building identified 3 genes (MDM2, PRKACG, and CACNA1G) with specific expression in CD133+CD200+colorectal cancer stem cells, and this result was confirmed by real-time quantitative PCR analysis. Conclusion A specific gene expression profile of colorectal cancer stem cells has been established through screening and identifying genes related to CD133+CD200+colorectal cancer stem cells by gene genechip technique, which provides a basis for further study of gene targeting therapy of colorectal cancer.
7.Construction of a online database for functional dyspepsia
Zaiwei HUANG ; Liping CHEN ; Bing XIAO
Journal of Southern Medical University 2015;(6):907-911
Objective To establish a clinical database of functional dyspepsia for epidemiological researches and standardizing clinical diagnosis and treatment. Methods The functional dyspepsia database was designed to incorporate the data from in-patients and out-patients with functional dyspepsia treated since July, 2013 and was constructed using Visual Studio. The patient data were collected using a customized case report form designed according to the Roman criteria III and the etiology, symptoms, and treatments of the patients. All the cases deemed ineligible were excluded. The database was displayed on a website and allowed online data entry, case searches and statistical analysis of the clinical parameters. Results and Conclusion The established online database for functional dyspepsia contained data of the general information, clinical symptoms, psychological status, living habits, dietary habits, medical history, examination results, clinical diagnosis, treatment methods and courses, outcomes and data statistics. The database was fully functional and provided complete and standardized data of functional dyspepsia for clinical studies.
8.A consensus on the standardization of the next generation sequencing process for the diagnosis of genetic diseases (1)-Procedures prior to genetic testing
Jian WANG ; Weihong GU ; Hui HUANG ; Yiping SHEN ; Hui XIONG ; Yi HUANG ; Ming QI ; Dongyan AN ; Duan MA ; Xuxu DENG ; Yong GAO ; Xiaodong WANG ; Zaiwei ZHOU ; Jian WU ; Xiong XU ; Wei ZHANG ; Hui KANG ; Zhiyu PENG ; Shihui YU ; Liang WANG ; Shangzhi HUANG
Chinese Journal of Medical Genetics 2020;37(3):334-338
Pre-testing preparation is the basis and starting point of genetic testing.The process includes collection of clinical information,formulation of testing scheme,genetic counseling before testing,and completion of informed consent and testing authorization.To effectively identify genetic diseases in clinics can greatly improve the diagnostic rate of next generation sequencing (NGS),thereby reducing medical cost and improving clinical efficacy.The analysis of NGS results relies,to a large extent,on the understanding of genotype-phenotype correlations,therefore it is particularly important to collect and evaluate clinical phenotypes and describe them in uniform standard terms.Different types of genetic diseases or mutations may require specific testing techniques,which can yield twice the result with half the effort.Pre-testing genetic counseling can help patients and their families to understand the significance of relevant genetic testing,formulate individualized testing strategies,and lay a foundation for follow-up.
9.A consensus on the standardization of the next generation sequencing process for the diagnosis of genetic diseases(3)-Data analysis
Jun SUN ; Yi HUANG ; Xiaodong WANG ; Wenfu LI ; Dongyan AN ; Yong GAO ; Hui XIONG ; Zaiwei ZHOU ; Xiong XU ; Xuxu DENG ; Xiaoqing WANG ; Hui HUANG ; Zhiyu PENG ; Wei ZHANG ; Shihui YU ; Liang WANG ; Weihong GU ; Shangzhi HUANG ; Yiping SHEN
Chinese Journal of Medical Genetics 2020;37(3):345-351
Bioinformatic analysis and variant classification are the key components of high-throughput sequencing-based genetic diagnostic approach.This consensus is part of the effort to develop a standardized process for next generation sequencing (NGS)-based test for germline mutations underlying Mendelian disorders in China.The flow-chart,common software,key parameters of bioinformatics pipeline for data processing,annotation,storage and variant classification are reviewed,which is aimed to help improving and maintaining a high-quality process and obtaining consistent outcomes for NGS-based molecular diagnosis.
10.A consensus on the standardization of the next generation sequencing process for the diagnosis of genetic diseases (4)-Report interpretation and genetic counseling
Hui HUANG ; Yiping SHEN ; Weihong GU ; Yi HUANG ; Xiaodong WANG ; Yong GAO ; Hui XIONG ; Zaiwei ZHOU ; Jing WU ; Duan MA ; Dongyan AN ; Wei ZHANG ; Qinmei FU ; Xi XIONG ; Zhiyu PENG ; Liang WANG ; Shangzhi HUANG ; Ming QI
Chinese Journal of Medical Genetics 2020;37(3):352-357
Clinical genetic testing results are compiled into a standardized report by genetic specialists and provided to clinicians and patients (Should the patient be intellectually disabled or under 18,the report will be provided to his/her parents or legal guardians).The content of genetic testing report should conform to relevant guidelines,industry standards and consensus.The decisions of clinicians will be made based on the report and clinical indications.Genetic counselors should provide post-test counseling to clinicians and patients or their authorized family members.A mechanism of follow-up visit after the genetic testing should be established with informed consent.Data should be shared by clinical institutions and genome sequencing institutions.As findings upon follow-up visit can help with further evaluation of the results,genome sequencing institutions should regularly re-analyze historical and follow-up data,and the updated results should be shared with clinical institutions.All activities involving reporting,genetic counselling,follow-up visiting,and re-analyzing should follow the relevant guidelines and regulations.