1.Molecular Genetic Characteristics of Trimethoprim Resistance in Clinical and Normal Fecal Isolates of Escherichia coli.
Sung Yong SEOL ; Dong Taek CHO ; Yoo Chul LEE ; Haeng Seop SHIN ; Neung Hee KIM
Journal of the Korean Society for Microbiology 1999;34(4):347-361
One hundred and thirty trimethoprim-resistant R plasmids derived from of Escherichia coli isolated from clinical specimens and feces of healthy collegians were examined for incompatibility, EcoRI endonuclease restriction fragment pattern, and Southern hybridization with DHFR I, II, III, V, and VII probe. 1. Most trimethoprim-resistant R plasmids were resistant to ampicillin, tetracycline, chloramphenicol, gentamicin, and kanamycin, and showed multiple drug resistance and various antimicrobial resistance patterns. 2. Trimethoprim-resistant R plasmids ranged from 90 to 50 kilobase and 42.3% of R plasmids tested were classified to incompatibilty group Inc FI, Inc FII or Inc FIV, 3. Among 48 random selected R plasmids from various origin, 14 R plasmids (including 9 of 14 Inc FII plasmids and 3 of 14 Inc FI plasmids) hybridized with DHFR VII oligonucleotide probe but others did not respond to any of DHFR probes used. 4. Most R plasmids showed various EcoRI endonuclease fragments and different reaction sites by Southern hybridization. Six plasmids showed identical or nearly identical molecular weight, EcoRI endonuclease fragment patterns and different sites of Southern hybridization. But 2 Inc FII plasmids derived from urine and feces showed identical pattern. These findings, if confirmed by further studies, suggest that normal flora E. coli can act as reservoir of resistant genes and, consequently, as a factor in the dissemination of these genes among enteric pathogens and need to be examined further.
Ampicillin
;
Chloramphenicol
;
Deoxyribonuclease EcoRI
;
Drug Resistance, Multiple
;
Escherichia coli*
;
Escherichia*
;
Feces
;
Gentamicins
;
Immunodeficiency Virus, Feline
;
Kanamycin
;
Molecular Biology*
;
Molecular Weight
;
Plasmids
;
R Factors
;
Tetracycline
;
Trimethoprim Resistance*
;
Trimethoprim*
2.A Case Report Kostmann Syndrome.
Han Wook YOO ; Son Moon SHIN ; Hyo Seop AHN ; Yong CHOI ; Chang Yee HONG
Journal of the Korean Pediatric Society 1983;26(3):284-288
No abstract available.
3.The Effects of Electrical Nerve Stimulation on Glycogen Content of the Slow and Fast Twitch Muscles in Rats
Duk Seop SHIN ; Sae Dong KIM ; Joo Chul IHN ; Yong Woon KIM ; Suck Kang LEE
The Journal of the Korean Orthopaedic Association 1989;24(2):613-618
This study observed the changes of the glycogen content in extensor digitorum and soleus by electrical stimulation on the sciatic nerve with various frequencies, and the result were compared with those of treadmill running exercise. The results are summarized as follows ; The glycogen content of extensor digitorum longus was greater than that of the soleus in the normal group, and the reducing amount of glycogen content of extensor digitorum longus was greater than that of the soleus by overnight fasting. As the frepuency of electrical stimulation was increased by 2, 5 and 10Hz., the glycogen content of the extensor digitorum longus was slightly reduced or changed minimally. As the loading period of clectrical stimulation was increased to 30 and 90minutes, the glycogen content of extensor digitorum longus was much reduced from early stage, and that of the soleus was the same tendency as the frepuency increased. The glycogen content of the extensor digitorum longus was proportionally reduced by treadmill running excercise, and that of the soleus was much reduced from the early stage. In summary, based on the experimental evidence of this investigation, it showed the different physio-chemical responses of th fast and slow twitch muscle fibers by electrical stimulation, and also not the equal responses of muscle fibers by electrical stimulation and treadmill running exercise.
Animals
;
Electric Stimulation
;
Fasting
;
Glycogen
;
Muscles
;
Rats
;
Running
;
Sciatic Nerve
4.Molecular Epidemiologic Analysis of Enterobacter Isolated from Clinical Specimen.
Sung Yong SEOL ; Dong Taek CHO ; Yoo Chul LEE ; Haeng Seop SHIN ; Hee Kyung CHANG ; Ki Shik SHIN
Journal of the Korean Society for Microbiology 1997;32(5):487-502
Eighty-nine isolates of Enterobacter spp. from two university hospitals were analyzed by phenotypic and genotypic characteristics for epidemiologic investigation. Most strains were isolated from sputum, urine, wound, pus and catheter tip. Most isolates of Enterobacter spp. were resistant to ampicillin, cefazolin and cefoxitin and 39% of E. cloacae isolates were also resistant to other cephalosporins and aminoglycoside antibiotics except amikacin but all strains were highly susceptible to imipenem and ciprofloxacin. Twenty-six antimicrobial resistance patterns were obtained from E. clacae, but E. aerogenes showed only 4 patterns. Fourty-two plasmid profiles were identified, but plasmid was not detected from 28.4% of E. cloacae and 58% of E. aerogenes. Six biotypes from E. cloacae and three biotypes from E. aerogenes were obtained by carbohydrate metabolism. Fourteen strains of E. cloacae carried conjugative R plasmids and these plasmids were further analyzed. Among them, ten plasmids showed identical antibiogram, molecular weight, and pI value by isoelectric focusing and nearly identical restriction endonuclease fragment pattern. Their parental strains had identical antibiogram, biotype, plasmid profile, and were isolated from 4 different specimens including 6 catheter tips of different patients. But most clinical isolates showed various types of combination and seemed to be different strains. These results indicate that the epidemic strain were present in this hospital and the combination of antibiogram and plasmid analysis can be used to discriminate the epidemic strains of multi-resistant E. cloacae.
Amikacin
;
Ampicillin
;
Anti-Bacterial Agents
;
Carbohydrate Metabolism
;
Catheters
;
Cefazolin
;
Cefoxitin
;
Cephalosporins
;
Ciprofloxacin
;
Cloaca
;
DNA Restriction Enzymes
;
Enterobacter*
;
Hospitals, University
;
Humans
;
Imipenem
;
Isoelectric Focusing
;
Microbial Sensitivity Tests
;
Molecular Weight
;
Parents
;
Plasmids
;
R Factors
;
Sputum
;
Suppuration
;
Wounds and Injuries
5.Mechanism of beta-lactam Resistance in Gram-negative Rods Isolated from Surgical Site Infection.
Haeng Seop SHIN ; Yong Shin KIM ; Dong Taek CHO
Korean Journal of Infectious Diseases 1999;31(5):390-401
BACKGROUND: There have been few studies about the kinds of species causing surgical site infections and their resistance pattern in Korea. An increase of extended-spectrum beta-lactamase (ESBL) producing strains is a worldwide problem. However, there is not enough data on the prevalence of ESBL-producing strains in Korea and the true extent of this problem seems to be under-recognized. METHODS: Minimal inhibitory concentrations of gram-negative bacilli isolated from surgical site infections were tested using the standard agar dilution method according to the National Committee for Clinical Laboratory Standards. To identify and characterize beta-lactamases, we performed conjugation test, isoelectric focusing, Southern hybridization, and polymerase chain reaction. RESULTS: A total of 54 strains of gram-negative enteric bacilli were identified:two strains of Acinetobacter spp., one of Citrobacter freundii, nine of Enterobacter cloacae, one of Enterobacter sakazakii, one of Escherichia coli, two of Klebsiella pneumoniae, one of Morganella morganii, one of Proteus vulgaris, 23 of Pseudomonas aeruginosa, four of Xanthomonas maltophila, and nine of Serratia marcescens. Three strains produced ESBL. CONCLUSION: Various species of gram-negative organisms isolated from surgical site infections showed complex antibiograms to various beta-lactams, even to the new generation of antibiotics. A large proportion of these strains showed conjugally transferable, plasmid-mediated, beta-lactam resistance. Some strains were ESBL-producing. This evidence suggests that there has been a molecular evolution of beta-lactamase genes to a great extent in Korea, possibly due to indiscriminate use of antibiotics.
Acinetobacter
;
Agar
;
Anti-Bacterial Agents
;
beta-Lactam Resistance*
;
beta-Lactamases
;
beta-Lactams
;
Citrobacter freundii
;
Cronobacter sakazakii
;
Drug Resistance
;
Enterobacter cloacae
;
Escherichia coli
;
Evolution, Molecular
;
Isoelectric Focusing
;
Klebsiella pneumoniae
;
Korea
;
Microbial Sensitivity Tests
;
Morganella morganii
;
Polymerase Chain Reaction
;
Prevalence
;
Proteus vulgaris
;
Pseudomonas aeruginosa
;
Serratia marcescens
;
Xanthomonas
6.Mechanism of beta-lactam Resistance in Gram-negative Rods Isolated from Surgical Site Infection.
Haeng Seop SHIN ; Yong Shin KIM ; Dong Taek CHO
Korean Journal of Infectious Diseases 1999;31(5):390-401
BACKGROUND: There have been few studies about the kinds of species causing surgical site infections and their resistance pattern in Korea. An increase of extended-spectrum beta-lactamase (ESBL) producing strains is a worldwide problem. However, there is not enough data on the prevalence of ESBL-producing strains in Korea and the true extent of this problem seems to be under-recognized. METHODS: Minimal inhibitory concentrations of gram-negative bacilli isolated from surgical site infections were tested using the standard agar dilution method according to the National Committee for Clinical Laboratory Standards. To identify and characterize beta-lactamases, we performed conjugation test, isoelectric focusing, Southern hybridization, and polymerase chain reaction. RESULTS: A total of 54 strains of gram-negative enteric bacilli were identified:two strains of Acinetobacter spp., one of Citrobacter freundii, nine of Enterobacter cloacae, one of Enterobacter sakazakii, one of Escherichia coli, two of Klebsiella pneumoniae, one of Morganella morganii, one of Proteus vulgaris, 23 of Pseudomonas aeruginosa, four of Xanthomonas maltophila, and nine of Serratia marcescens. Three strains produced ESBL. CONCLUSION: Various species of gram-negative organisms isolated from surgical site infections showed complex antibiograms to various beta-lactams, even to the new generation of antibiotics. A large proportion of these strains showed conjugally transferable, plasmid-mediated, beta-lactam resistance. Some strains were ESBL-producing. This evidence suggests that there has been a molecular evolution of beta-lactamase genes to a great extent in Korea, possibly due to indiscriminate use of antibiotics.
Acinetobacter
;
Agar
;
Anti-Bacterial Agents
;
beta-Lactam Resistance*
;
beta-Lactamases
;
beta-Lactams
;
Citrobacter freundii
;
Cronobacter sakazakii
;
Drug Resistance
;
Enterobacter cloacae
;
Escherichia coli
;
Evolution, Molecular
;
Isoelectric Focusing
;
Klebsiella pneumoniae
;
Korea
;
Microbial Sensitivity Tests
;
Morganella morganii
;
Polymerase Chain Reaction
;
Prevalence
;
Proteus vulgaris
;
Pseudomonas aeruginosa
;
Serratia marcescens
;
Xanthomonas
7.Epidemiology of Serratia marcescens Isolates by Transferable Resistance Gene Analysis.
Sung Yong SEOL ; Dong Taek CHO ; Yoo Chul LEE ; Haeng Seop SHIN ; Hee Kyung CHANG ; Kyung Sook KIM
Journal of the Korean Society for Microbiology 1998;33(5):485-497
Conjugative R plasmids derived from 74 clinical isolates of Serratia marcescens were epidemiologically analyzed for antimicrobial resistance, EcoRI restriction endonuclease analysis and Southern hybridization with DHFR, TEM and SHV probe. 1. Resistance frequency of isolates against various B-lactam antibiotics was changed by year. 2. Twenty (27%) resistant strains transferred 32 R plasmids to E. coli or Klebsiella by mixed culture. Most strains isolated from 1994 to 1996 transferred only trimethoprim resistance but most strains isolated from 1997 did resistances against gentamicin (Gm) and B-lactams including ampicillin (Ap), carbenicillin (Cb), cefazolin (Cz), cefaloridine (Cl), cefamandole (Cn). 3. Ten plasmids of GmApCbCzC1Cn or GmApCbCzC1 pattern and 3 plasmids of TcSuGmTbApCbCzC1 pattern respectively showed identical EcoRI restriction endonuclease digestion patterns and hybridized fragment patterns with TEM-1 probe by Southern hybridization. These results indicate that the epidemic plasmids carrying blamM gene were present in this hospital in 1997 and molecular genetic analysis of R plasmids can be used to discriminate S. marcescens isolates for epidemiologic studies.
Ampicillin
;
Anti-Bacterial Agents
;
Carbenicillin
;
Cefamandole
;
Cefazolin
;
Cephaloridine
;
Digestion
;
DNA Restriction Enzymes
;
Epidemiologic Studies
;
Epidemiology*
;
Gentamicins
;
Klebsiella
;
Molecular Biology
;
Plasmids
;
R Factors
;
Serratia marcescens*
;
Serratia*
;
Trimethoprim Resistance
8.Epidemiological Study of Serratia marcescens Isolates by Molecular Analysis.
Sung Yong SEOL ; Dong Taek CHO ; Yoo Chul LEE ; Haeng Seop SHIN ; Hee Kyung CHANG ; Sung Joe BAE
Journal of the Korean Society for Microbiology 1997;32(5):503-520
Ninety-two strains of Serratia marcescens isolated from 5 hospitals were analyzed for plasmid profile, antimicrobial drug resistance pattern, biotyping, and production of pigment. Ninety-three percents of strains were resistant to chloramphenicol (Cm), tetracycline (Tc), sulfisoxazole (Su), cefazolin (Cz), ampicillin (Ap), and rifampin (Rf). A majority of strains were susceptible to amikacin (Ak), ciprofloxacin (Ci), and cefotaxim (Ct). Fifty-four resistance patterns were found in 94 strains and the most prevalent resistance pattern was CmTcSuApCzRf. Seventeen (17.4%) isolates could transfer their partial resistance to E. coli or Klebsiella pneumoniae by conjugation. Twenty-seven plasmid profiles in 54 strains (58.7%) were detected, however no predominant patterns were seen in isolates from each hospital. Eleven biotypes were detected. The common types were A3b (29.4%) and A8b (27.1%), predominant types were found in each hospital. Twenty strains from 4 of 5 hospitals showed consistence of 3 types. These results indicate that plasmid profile analysis, Grimont biotyping, and resistance pattern type of strains in combination are useful as an epidemiological tool for S. marcescens isolates and some of isolates were confirmed as nosocomial strains.
Amikacin
;
Ampicillin
;
Cefazolin
;
Cefotaxime
;
Chloramphenicol
;
Ciprofloxacin
;
Drug Resistance, Microbial
;
Epidemiologic Studies*
;
Klebsiella pneumoniae
;
Plasmids
;
Rifampin
;
Serratia marcescens*
;
Serratia*
;
Sulfisoxazole
;
Tetracycline
9.Epidemiology of Klebsiella Isolates by Antimicrobial Resistance Gene Analysis.
Sung Yong SEOL ; Dong Taek CHO ; Yoo Chul LEE ; Haeng Seop SHIN ; Hee Kyung CHANG ; Kwang Man KIM
Journal of the Korean Society for Microbiology 1997;32(5):467-486
One hundred of clinical isolates of Klebsiella spp. from three hospitals were analyzed by phenotypic and genotypic characteristics for epidemiologic investigation. Almost all isolates of Klebsiella spp. showed highly resistance to ampicillin, and carbenicillin and 4.5-7.9% of K. pneumoniae isolates were also resistant to cefotaxime and ceftazidime, and 10-15% to aminoglycoside antibiotics except amikacin. However, all strains were highly susceptible to imipenem, cefotetan, amikacin and ciprofloxacin. All Koxytoca strains were susceptible to antimicrobials tested except Ap, Am and Cb. Twelve strains of K. pneumoniae hybridized with TEM or SHV probe and extended spectrum B-lactamases from 7 strains were TEM type. Eleven conjugative R plasmids and their parental strains were analyzed. Among them, three couples of plasmids showed identical or nearly identical resistance phenotypes of B-lactams and aminoglycosides, molecular weights, and pI values by isoelectric focusing, and hybridized fragment patterns with TEM probe by Southern hybridization, EcoR1 restriction endonuclease fragment patterns. Their parental strains were isolated from sputum, tissue, and ascites of patients and had similar characteristics. These results indicate that the epidemic strains or epidemic plasmids were present in this hospital and antimicrobial resistance anlysis can be used to discriminate clinical isolates of multi-resistant K. pneumoniae.
Amikacin
;
Aminoglycosides
;
Ampicillin
;
Anti-Bacterial Agents
;
Ascites
;
Carbenicillin
;
Cefotaxime
;
Cefotetan
;
Ceftazidime
;
Ciprofloxacin
;
DNA Restriction Enzymes
;
Epidemiology*
;
Family Characteristics
;
Humans
;
Imipenem
;
Isoelectric Focusing
;
Klebsiella*
;
Molecular Weight
;
Parents
;
Phenotype
;
Plasmids
;
Pneumonia
;
R Factors
;
Sputum
10.Analysis of Marker Chromosomes in Renal Cell Carcinoma Cell Line Caki-1 by Chromosome Microdissection.
Jae Seop SHIN ; Soo Yeun PARK ; Yong Hyuck CHUN ; Sun Hwa PARK
Korean Journal of Urology 1998;39(3):205-212
PURPOSE: The analysis of recurring chromosome aberrations has become an integral part of the diagnostic and prognostic workup of many human cancers, and their molecular analyses have facilitated the identification of genes related to the pathogenesis of cancer But the technical limitation of conventional cytogenetic method makes unable us to characterize all recognizable chromosome rearrangements. The generation of chromosome region specific painting probe by PCR amplification of microdissected chromosomal DNA has proven extremely useful in identification of chromosomal derivation for marker chromosomes which are indeterminable by routine chromosome banding analysis. In this study we have constructed and analyzed the band-specific painting probe for unidentified marker chromosomes of renal cell carcinoma cell line, Caki-1 to determine the derivative chromosomes and the painting probes applied to CURC-II to compare the marker chromosomes. MATERIALS AND METHODS: Microdissection was performed on 9q+ and unidentified one of Caki-1, and chromosomal BNAs were amplified by PCR using topoisomerase I and T7 DNA polymerase. Fluorescent in situ hybridization was conducted with biotin labeled PCR products to normal, Caki-1 and CURC- II metaphase chromosomes. RESULTS: With this method, it was possible to construct the band-specific painting probes for markers and the probes hybridized specifically to the dissected regions and derivative chromosomes. The 9q+ and unidentified one were identified as t(9;17)(q34;q21) and t(15;20) respectively. The marker chromosomes - t(9;I 7), der(1 ;17)(ql0;q10), t(15;20), t(?;15), der(1 ;20), t(14;89) were examined same in Caki-1 and CURC-II. CONCLUSIONS: Thus this methodological advance significantly extends the limits of conventional cytogenetic analysis by enabling the analysis of unknown chromosome regions, and these painting probes can be applied to detect the similar marker chromosomes in renal cell carcinoma, and the probe pools for markeys may be used to identify the cancer-relevant genes.
Biotin
;
Carcinoma, Renal Cell*
;
Cell Line*
;
Chromosome Aberrations
;
Chromosome Banding
;
Cytogenetic Analysis
;
Cytogenetics
;
DNA
;
DNA Topoisomerases, Type I
;
Humans
;
In Situ Hybridization, Fluorescence
;
Metaphase
;
Microdissection*
;
Paint
;
Paintings
;
Polymerase Chain Reaction