1. Cluster Analysis of Karyotype and Resemblance-Near Coefficients of Schizonepeta tenuifolia Briq. from Different Producing Origins
Chinese Pharmaceutical Journal 2017;52(15):1313-1318
OBJECTIVE: To explore the karyotype features and genetic relationship among Schizonepeta tenuifolia Briq. from different producing origins. METHODS: The chromosome features of Schizonepeta tenuifolia Briq. from 11 different producing origins were analyzed by using root-tip squashing method and clustered by the karyotype resemblance-near coefficients. RESULTS: The Schizonepeta tenuifolia Briq. from 11 different producing origins all had 12 chromosomes. There were four types of karyotype formula: 2n=2x=12=4m+8sm, 2n=2x=12=8m+4sm, 2n=2x=12=6m+6sm and 2n=2x=12=4m+6sm+2st. The karyotypes of Yutianchun and Shanxi Schizonepeta tenuifolia Briq. were 2B type, and those of the other Schizonepeta tenuifolia Briq. were 2A type. The asymmetrical karyotype coefficients were not distinctively different, which ranged from 61% to 67%, and the karyotype of Sichuan Schizonepeta tenuifolia Briq. was the most primitive among all the samples, and the highest degree of evolution belonged to Anguoxia Schizonepeta tenuifolia Briq. The karyotype clustering analysis showed that Jiangsu and Sichuan Schizonepeta tenuifolia Briq had the highest karyotype resemblance-near coefficient (0.989) and the smallest evolutionary distance (0.011). The farthest genetic relationship existed between Zhejiang and Yutianchun Schizonepeta tenuifolia Briq., as shown by the minimum karyotype resemblance-near coefficient (0.792 5) and the maximum evolution distance (0.232 6). CONCLUSION: Karyotype is an important parameter for identification of medicinal plants. The genetic distances between 11 species of Schizonepeta tenuifolia Briq. are obtained by karyotype clustering analysis of karyotype resemblance-near coefficient. The results provide cytological information for the study of germplasms identification, genetic relationship and system evolution of Schizonepeta tenuifolia Briq.
2. Comparative study on the total flavonoids content in different species of bupleurum in different growth period on the site
Chinese Pharmaceutical Journal 2015;50(5):394-398
OBJECTIVE: To study variation of total flavonoids from nine different Bupleurum chinense introduced of different ground parts of different organs in different growth period, and explore the best harvest period and the optimal varieties. METHODS: The extraction conditions were optimized by microwave assisted method, UV-visible spectropholometry was used to determine the contents of total flavonoids. RESULTS: The optimum extraction conditions: the concentration of ethanol was 80%, each microwave time 40 s, microwave 10 times; the content of total flavonoids was difference in different growth period, fluctuated trend. The flower was the highest, with an average of 7.59% in the range of 4.65%-16.75%, the content of total flavonoids in nutrition growth phase; leaf>stem, in flowering stage; flower>leaf>stem; in fruiting stage; the content of Gansu Longxi, Liaoning Shenyang, Shandong Heze and Hebei Anguo Bupleurum: fruit>leaf>stem, other Bupleurum; leaf>stem>fruit; The higher the content of total flavonoids was in the flowering and fruiting of nine different Bupleurum chinense introduced, Gansu Longxi Bupleurum (flowering stage) was the highest, up to 27.41%. CONCLUSION: It is suggested that harvested in the flowering or fruiting stage, and carried on the comprehensive development and utilization.
3.Research progress of ATR kinase-targeted inhibitors in the cancer therapy
Ying-hui YUAN ; Ji-long DUAN ; Zi HUI ; Tian XIE ; Xiang-yang YE
Acta Pharmaceutica Sinica 2022;57(3):593-604
Cancer, also known as malignant tumor, is the second largest disease after heart disease, which is characterized by genomic instability and mutagenicity. Ataxia telangiectasia and RAD3-related kinase (ATR) are members of phosphatidylinositol 3-kinase (PIKK) family, belonging to serine/threonine kinase, one of the key kinases in DNA damage response (DDR) and DNA repair pathway. This paper reviews the latest progress in the ATR inhibitor field including mechanism of action (MOA), therapeutic applications, and the combination therapy from the perspective of medicinal chemistry. It also discusses the possible challenges and future directions of developing ATR inhibitor antitumor drugs, which could provide the scientists in this field the convenience for access the information and application guidance for clinical studies.
4.Study on induction of polyploidy in Salvia bowleyana by colchicine treatment.
Ying-Zi DUAN ; Shao-Ying KE ; Jing CAO ; Ying-Ze NIU ; Chao-Zhong PENG
China Journal of Chinese Materia Medica 2006;31(6):445-448
OBJECTIVETo explore the technique of induction of polyploidy in Salvia bowleyana by colchicine treatment.
METHODThe three kinds of explant of bud, leaf and calli were induced by colchicine treatment.
RESULTThe induction effects were better when the calli was treated by colchicines (15 mg x L(-1)) and the leaf was pre-cultured for one week. The doubling rate was 33.33%, while the majority were wholy doubled plants, and the leaves were thicker and broader, the color was darker, the root was thicker and the stoma size was obviously bigger than the diploid plants. The number of chromosome were 8 to 64. Isoenzyme analysis showed that the enzyme activities between the polyploid and the diploid plants were quite different.
CONCLUSIONInduction of polyploidy by colchicine treatment is efficacious. The part of the doubled plants were identified as homologmous tetraploids.
Chromosomes, Plant ; genetics ; Colchicine ; pharmacology ; Plant Leaves ; anatomy & histology ; genetics ; growth & development ; Plant Shoots ; anatomy & histology ; genetics ; growth & development ; Plants, Medicinal ; anatomy & histology ; genetics ; growth & development ; Polyploidy ; Salvia ; anatomy & histology ; genetics ; growth & development
5.A Bw12 blood type caused by 278C>T mutation of ABO gene.
Qing-li MENG ; Yong GAO ; Mei CHEN ; Ying DUAN ; Ling-zi PAN ; Wei-jian YU
Chinese Journal of Medical Genetics 2012;29(4):482-484
OBJECTIVETo determine the serotype and genotype of a sample with ABO blood group discrepancies.
METHODSSerotype was determined with serological method. Sequence specific primer polymerase chain reaction (SSP-PCR) was carried out based on the serotype. Sequences of exons 6 and 7 of ABO gene was analyzed by sequence-based testing (SBT).
RESULTSCompletely agglutinated A antigen, half agglutinated B antigen and weak agglutinated anti-B antibody were detected in both erythrocytes and serum, which suggested presence of a ABw serotype. An A/Bw12 genotype was revealed by B subgroup detection. Sequences of exons 6 and 7 were 278CT, 297GA and 467CT, 526CG, 657CT, 703GA, 796CA, 803GC, 930GA, respectively. The genotype fit with A102/B101 except for a nt278 C>T mutation. Blood group antigen gene mutation database (BGMUT) search has confirmed the mutant allele to be Bw12.
CONCLUSIONAn A102/Bw12 genotype has been found in the Chinese population.
ABO Blood-Group System ; genetics ; Base Sequence ; Blood Group Antigens ; genetics ; Blood Grouping and Crossmatching ; methods ; Female ; Genotype ; Humans ; Middle Aged ; Molecular Sequence Data ; Mutation
6.Study on interference effect of Sijunzi decoction on brain-gut CaM/CaMK II of spleen Qi deficiency syndrome rats.
Rong TIAN ; Zi-han GONG ; Xiao-yi YANG ; Li-ming ZHU ; Yong-qiang DUAN ; Ying-xia CHENG ; Juan DU ; Yan WANG
China Journal of Chinese Materia Medica 2015;40(20):4075-4079
OBJECTIVETo observe the dynamic time-phase expressions of key genes of brain-gut CaM signal pathway of spleen Qi deficiency rats and the intervention effect of Sijunzi decoction.
METHODMale Wistar rats were randomly divided into the normal control group, model 14 d, 21 d, 28 d groups, and Sijunzi decoction 14 d, 21 d, 28 d groups. Except for the normal control group, the remaining groups were included into the spleen Qi deficiency model with the bitter cold breaking Qi method (ig 7.5 g · kg⁻¹ · d⁻¹ of Rheum officinale, Fructus aurantii immaturus, Magnolia officinalis preparation) and the exhaustive swimming method. On the 7th day after the modeling, the Sijunzi decoction groups were orally administered with Sijunzi decoction 20 g · kg⁻¹ · d⁻¹. The expressions of key genes CaM/CaMK II of CaM signaling pathway in hippocampus and intestine at different time points by immunohistochemical method and Western blot. At the same time, the intervention effect of Sijunzi decoction on spleen Qi deficiency rats and its mechanism were analyzed.
RESULTSpleen Qi deficiency rats showed higher intestinal CaM/CaMK II expression and lower hippocampus CaM/CaMK II expression than normal rats (P < 0.05, P < 0.01). After the treatment of Sijunzi decoction, spleen Qi deficiency rats showed reduction in intestinal CaM/CaMK II expression and increase in hippocampus CaM/CaMK II expression (P < 0.05, P < 0.01).
CONCLUSIONThe formation of spleen Qi deficiency syndrome may be related to the high expression of CaM/CaMK II in small intestine tissues and its low expression in hippocampus tissues. Sijunzi decoction may achieve the therapeutic effect in spleen Qi deficiency syndrome by reducing the CaM/CaMK II expression in intestinal tissues and increasing it in hippocampus tissues.
Animals ; Brain ; drug effects ; enzymology ; metabolism ; Calcium-Calmodulin-Dependent Protein Kinase Type 2 ; genetics ; metabolism ; Calmodulin ; metabolism ; Drugs, Chinese Herbal ; administration & dosage ; Humans ; Intestines ; drug effects ; enzymology ; metabolism ; Male ; Qi ; Rats ; Rats, Wistar ; Spleen ; drug effects ; Splenic Diseases ; drug therapy ; enzymology ; genetics ; metabolism
7.Genetic evolution analysis of matrix protein 2 gene of avian influenza H5N1 viruses from boundary of Yunnan province.
Xue XIAO ; Wen-dong ZHANG ; Bo-fang DUAN ; Huan-yun ZHAO ; Qing-liang LIU ; Ting-song HU ; Wei QIU ; Zi-liang FENG ; Ying ZHENG ; Quan-shui FAN ; Ying-guo ZHANG ; Fu-qiang ZHANG
Chinese Journal of Preventive Medicine 2013;47(6):514-517
OBJECTIVETo elucidate the variation in characterizations and genetic evolution of the matrix protein 2 or ion channel protein(M2) genes of avian influenza subtype H5N1 viruses in the boundary region of Yunnan province from 2008 to 2012.
METHODSA total of swab samples were collected from foreign poultry such as the junction between Yunnan and Vietnam, Laos,myanmar and wild birds in boundary region of Yunnan province from 2008 to 2012 and screened by H5N1 subtype-specific multiplex RT-PCR. The M genes of H5N1 virus from the positive samples were amplified by RT-PCR and cloned into pMD18-T vectors for sequencing. The alignment and phylogenetic analysis of M2 genes were performed with sequences of the known reference strains.
RESULTSA total of 71 positive samples were found out of 1240 samples and the positive rate was 5.72%. A total of 14 different M2 sequences were obtained from 30 positive samples and were divided into 3 distinct clades or sub-clades(1.2.1, 1.2.2 and 2) by phylogenetic analysis, 5, 7 and 2, respectively. The M2 genes and Hemagglutinin(HA) genes of H5N1 viruses from the boundary region of Yunnan province had showed different relationship of genetic evolution. The substitution or mutation of key amino acids sites had been found among the domains of epitope, adamantane-resistance, and poultry or human original viral strains.
CONCLUSIONThe M2 genes of H5N1 subtype viruses in boundary region of Yunnan province from 2008 to 2012 showed genetic divergence and the virus of clade 1.2.2 had become dominant epidemic strain in this region.
Animals ; Birds ; virology ; Chickens ; virology ; China ; Evolution, Molecular ; Influenza A Virus, H5N1 Subtype ; classification ; genetics ; Influenza in Birds ; virology ; Phylogeny ; Poultry ; virology ; Viral Matrix Proteins ; genetics
8.Genetic evolution of non-structural gene among avian influenza H5N1 viruses isolated from the boundary of Yunnan province.
Xue XIAO ; Wen-dong ZHANG ; Bo-fang DUAN ; Huan-yun ZHAO ; Qing-liang LIU ; Ting-song HU ; Wei QIU ; Zi-liang FENG ; Ying ZHENG ; Quan-shui FAN ; Ying-guo ZHANG ; Fu-qiang ZHANG
Chinese Journal of Epidemiology 2013;34(5):491-495
OBJECTIVETo elucidate the characteristics of variation and the genetic evolution of non-structural protein (NS1, NS2) genes related to avian influenza subtype H5N1 viruses isolated from the boundary region of Yunnan province.
METHODSSwab samples were collected from foreign poultry and wild birds in the boundary regions of Yunnan province and screened by H5/N1 subtype-specific multiplex RT-PCR. The NS segment of H5N1 virus from the positive samples were amplified by RT-PCR and cloned into pMD18-T vectors for sequencing. The alignment and phylogenetic analysis on those available NS1, NS2 genes were performed with sequences of the known reference strains.
RESULTS71 positive samples were identified from 1240 samples, with the positive rate as 5.72%. Fourteen different NS segment sequences were obtained from 30 representative positive samples and could be divided into 3 distinct clades or sub-clades (I-1, I-2 and II), by phylogenetic analysis. The NS1/NS2 genes and Hemagglutinin (HA) genes of H5N1 viruses from the boundary regions of Yunnan province showed different relationships regarding the characteristics on genetic evolution. The substitution or mutation of key amino acids sites had been noticed in the nuclear location signal domains, effect domain, and other pathogenicity markers.
CONCLUSIONNS genes of H5N1 subtype viruses in boundary region of Yunnan province showed genetic divergence and the virus of clade I-2 and II had become dominant epidemic strains in this region since 2010.
Amino Acid Sequence ; Animals ; Animals, Wild ; Birds ; virology ; China ; epidemiology ; Evolution, Molecular ; Genome, Viral ; Influenza A Virus, H5N1 Subtype ; genetics ; isolation & purification ; Influenza in Birds ; epidemiology ; virology ; Phylogeny
9.Detection and molecular characterization of human parechovirus (HPeV) in children with acute gastroenteritis.
Jie LI ; Qing ZHANG ; Zi-qian XU ; Wei-xia CHENG ; Dan-di LI ; Hui-ying LI ; Jin-xin XIE ; Shu-xian CUI ; Na LIU ; Jing-bo ZHAO ; Zhao-jun DUAN
Chinese Journal of Experimental and Clinical Virology 2011;25(1):46-48
OBJECTIVETo study HPeV from stool samples of children with acute gastroenteritis under 5 years old.
METHODSWe conducted a real-time PCR to detect HPeV from stool samples and to amply VP1 sequence by nested RT-PCR to identify HPeV type.
RESULTSThe results showed that 27 of 306 (8.82%) children with acute gastroenteritis were infected HPeV. 11 strains were typed. 9 strains HPeV1, both HPeV2 and HPeV4 was 1 strain. HPeV was mostly identified in autumn season with a peak in July. HPeV seemed relevant in children >2 years old. The range of nucleotide identity between all isolated strains with reference strains was 79%-92%.
CONCLUSIONEpidemiology characteristic of HPeV in Jilin was concordance with that of reports. HPeV3 wasnt detected. It's significant to conduct the large scale and long-term surveillance of HPeV.
Acute Disease ; Child, Preschool ; Female ; Gastroenteritis ; epidemiology ; virology ; Humans ; Infant ; Male ; Parechovirus ; classification ; genetics ; isolation & purification ; Phylogeny
10.Hepatocyte growth factor enhances protein synthesis in cardiomyocytes exposed to gamma-ray irradiation.
Shun-ying HU ; Chao-ping FU ; Hai-feng DUAN ; Jin-long CHEN ; Rong-liang WANG ; Bin WU ; Zi-kuan GUO ; Guo-wei CHEN ; Li-sheng WANG
Journal of Southern Medical University 2007;27(5):602-604
OBJECTIVETo investigate the protective effect of hepatocyte growth factor (HGF) on protein synthesis in rat cardiomyocytes exposed to gamma-ray irradiation.
METHODSPrimary cultured cardiomyocytes were irradiated with single-dose (20 Gy) gamma ray in the absence or presence of HGF (40 ng/ml) added in the cell culture 3 h before the exposure. Forty-eight hours after irradiation, the total cellular protein was measured and cell cycle analyzed by flow cytometry. The cardiomyoctes were also infected with AdGFP 48 h after irradiation and the fluorescence intensity of the green fluorescence protein (GFP) in the cells determined by flow cytometry 48 h after infection.
RESULTSThe protein synthesis was decreased significantly in the irradiated cardiomyocytes as compared with the control group (P<0.01), but was remedied significantly by incubation of the cells with HGF before the exposure (P<0.05). Flow cytometry revealed much lower mean fluorescence intensity (MFI) of GFP in irradiated cardiomycytes than in cells without the exposure (P<0.01); The MFI was higher in HGF-treated cardiomyocytes than in cells without HGF treatment following the exposure (P<0.01).
CONCLUSIONGamma ray irradiation inhibits protein synthesis in cardiomyocytes, and HGF may attenuate this effect of gamma ray exposure for cardiomyocyte protection.
Animals ; Animals, Newborn ; Cell Cycle ; drug effects ; radiation effects ; Cells, Cultured ; Flow Cytometry ; Gamma Rays ; Green Fluorescent Proteins ; genetics ; metabolism ; Hepatocyte Growth Factor ; pharmacology ; Microscopy, Fluorescence ; Myocytes, Cardiac ; cytology ; metabolism ; Protein Biosynthesis ; drug effects ; radiation effects ; Rats ; Rats, Wistar