1.Progress of DNA-based Methods for Species Identification.
Zhen HU ; Su-hua ZHANG ; Zheng WANG ; Ying-nan BIAN ; Cheng-tao LI
Journal of Forensic Medicine 2015;31(2):129-131
Species identification of biological samples is widely used in such fields as forensic science and food industry. A variety of accurate and reliable methods have been developed in recent years. The current review shows common target genes and screening criteria suitable for species identification, and described various DNA-based molecular biology methods about species identification. Additionally, it discusses the future development of species identification combined with real-time PCR and sequencing technologies.
Animals
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DNA/genetics*
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Genetic Techniques/trends*
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Humans
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Oligonucleotide Array Sequence Analysis
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Polymerase Chain Reaction
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Real-Time Polymerase Chain Reaction
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Sequence Analysis, DNA/trends*
2.Genetic Polymorphisms of 26 Y-STR Loci in Fujian She Nationality and Its Forensic Application.
Ying-nan BIAN ; Tele T SIYIT ; Ru-xin ZHU ; Qi ZHAO ; ZHANG SU-HUA
Journal of Forensic Medicine 2015;31(4):269-272
OBJECTIVE:
To study the forensic application of Goldeneye DNA ID 26Y Kit in the She nationality.
METHODS:
Through capillary electrophoresis, the genotype of 26 Y-STR loci were analyzed in 53 unrelated male individuals from Fujian She nationality. The population genetics parameters such as allele frequency and haplotype diversity were calculated. The comparisons among the She nationality and the other nationalities were analyzed.
RESULTS:
A total of 126 alleles were observed on the 26 Y-STR loci of 53 unrelated male individuals. The allele frequencies and GD value ranged from 0.010 1 to 0.886 8 and 0.211 2 to 0.846 2, respectively. The GD value was greater than 0.5 in the 19 loci. A total of 47 haplotypes were observed. Based on R(ST), multidimensional scaling plot indicated that the genetic relationship among Fujian She nationality and Minnan Han nationality was closest, followed by Southern China Han nationality and Northern China nationality.
CONCLUSION
Goldeneye™ DNA ID 26Y Kit including 26 Y-STR loci has good polymorphism in the She nationality. As an additional system, it has forensic application value in some special cases.
Asian People/genetics*
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China
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Chromosomes, Human, Y/genetics*
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Ethnicity/genetics*
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Forensic Genetics
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Genetic Markers
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Genetics, Population
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Humans
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Polymerase Chain Reaction
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Polymorphism, Genetic
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Population Groups
3.Establishment of 43-plex SNP Typing System and Its Forensic Application
Ya-Nan LI ; Min LI ; Lei JIANG ; Xiao-Hui LUAN ; Na LIANG ; Qian-Nan XU ; Jia-Shuo ZHANG ; Ming-Chi TANG ; Ying-Nan BIAN ; Li-Qin CHEN
Journal of Forensic Medicine 2018;34(2):126-131,137
Objective To evaluate the application of 43-plex SNP typing system in forensic science. Methods The typing of 43 SNP loci in 123 unrelated Han individuals from East China was detected by MALDI-TOF-MS. The application value of 43-plex SNP typing system was assessed according to the foren-sic parameters of population genetics. Results All the 43 SNP loci of 123 individuals showed no signifi-cant departure from Hardy-Weinberg equilibrium (P>0.05). Excepted rs1355366, rs2270529, rs10776839 and rs938283, there were 39 SNP loci had minor allele frequencies (MAF), which were greater than 0.25. Among the 25 loci MAFs, 24 ranged from 0.4 to 0.5, while 3 were close to 0.4. The DP, CDP, PIC, Ho, PEtrio and PEduo of the 43 SNP loci were 0.2901-0.6544, 1-9.8×10-11, 0.1708-0.5000, 0.1557-0.5935, 0.0854-0.2500 and 0.0146-0.1250, respectively. The CPEtrio and CPEduo were 0.999986 and 0.9924361, respectively. Conclusion The 43-plex SNP typing system in present study shows a high polymorphism, which can be an effective supplement and verification for traditional STR genetic markers. It also can be used with other commercial kits for the forensic paternity testing and individual identification.
4.Advances in signal transduction pathway of platelet activation
Jing-Qi BIAN ; Yue-Nan FENG ; Wen-Ying NIU ; Hong-Bin XIAO
Tianjin Medical Journal 2018;46(1):99-103
Platelets are one of essential components of mammalian blood and play an important role in physiological and pathological reactions such as hemostasis, inflammatory response, thrombosis and rejection of organ transplantation. Platelet activation signal is the main physiological transmission mechanism that activates and induces platelets to play a physiological role, which has been the research focus in the field of physiological research in recent years. In this paper, we reviewed the new mechanisms of adhesion receptor-mediated calcium elevation, the new ideas of platelet activation mediated by pattern recognition receptors, and the new concept in platelet cGMP signaling and some other new researches.
5.Study of screening pseudoallergenic substances of Shuanghuanglian injection.
Yan YI ; Yu-shi ZHANG ; Chun-ying LI ; Hai-yu ZHAO ; Hong-bin XIAO ; Gui-qin LI ; Yu-ting LU ; Jia-yin HAN ; Yong ZHAO ; Hong-jie WANG ; Nan SI ; Ai-hua LIANG ; Bao-lin BIAN
China Journal of Chinese Materia Medica 2015;40(14):2727-2731
In this study, chemistry, biology and pharmacology were combinated to screen pseudoallergenic substances of Shuang-huanglian injection (SHLI) so that to establish a scientific and systematic approach to screen pseudoallergenic substances of traditional Chinese medicine injections. The mouse pseudoallergic reaction models were used to screen the pseudoallergic reaction of SHLI's intermediate extract and the intermediate extract's component or ingredient. Among the three intermediates of Shuanghuanglian injection (extract of Scutellaria baicalensis, extract of Lonicera japonica, extract of Forsythia suspensa) , pseudoallergic action of Forsythia suspensa was the strongest, Forsythia suspesnsa's pseudoallergic reaction mainly associated with the composition with largerchemical polarity. Further it was found that forsythiaside A and arctiin which existed in the the composition with largerchemical polarity caused obvious pseudoallergic reactions. SHLI with removal forsythoside A with the technology of HPLC-MS displayed reduced pseudoallergic reaction and a significant improved safety. This study provided a scientific basis for SHLI process improvements and also offered idea and research foundation for screening pseudoallergenic substances injections in other TCM injections.
Animals
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Drug Hypersensitivity
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etiology
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Drugs, Chinese Herbal
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adverse effects
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analysis
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Furans
;
adverse effects
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Glucosides
;
adverse effects
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Glycosides
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adverse effects
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Injections
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Male
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Mice
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Mice, Inbred ICR
6.Association of thrombospondin-1 gene polymorphisms with myocardial infarction in a Chinese Han population.
Lei GAO ; Guo-ping HE ; Jian DAI ; Ji-zheng MA ; Guo-ying YANG ; Chuan-ping QI ; Zhi-ping BIAN ; Di YANG ; Ji-nan ZHANG
Chinese Medical Journal 2008;121(1):78-81
Adult
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Aged
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China
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ethnology
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Female
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Humans
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Male
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Middle Aged
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Myocardial Infarction
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genetics
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Polymorphism, Genetic
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Thrombospondin 1
;
genetics
7.Review of Second Generation Sequencing and Its Application in Forensic Genetics.
Su Hua ZHANG ; Ying Nan BIAN ; Qi ZHAO ; Cheng Tao LI
Journal of Forensic Medicine 2016;32(4):282-289
The rapid development of second generation sequencing (SGS) within the past few years has led to the increasement of data throughput and read length while at the same time brought down substantially the sequencing cost. This made new breakthrough in the area of biology and ushered the forensic genetics into a new era. Based on the history of sequencing application in forensic genetics, this paper reviews the importance of sequencing technologies for genetic marker detection. The application status and potential of SGS in forensic genetics are discussed based on the already explored SGS platforms of Roche, Illumina and Life Technologies. With these platforms, DNA markers (SNP, STR), RNA markers (mRNA, microRNA) and whole mtDNA can be sequenced. However, development and validation of application kits, maturation of analysis software, connection to the existing databases and the possible ethical issues occurred with big data will be the key factors that determine whether this technology can substitute or supplement PCR-CE, the mature technology, and be widely used for cases detection.
DNA, Mitochondrial/genetics*
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Forensic Genetics
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Genetic Markers
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Humans
;
MicroRNAs/genetics*
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Polymerase Chain Reaction
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Polymorphism, Single Nucleotide
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RNA, Messenger/genetics*
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Sequence Analysis, DNA/methods*
8.Determination of neohesperidin and naringin in Qingfei Paidu Granules by RP-HPLC and their transfer rates in preparation process.
Yan ZHANG ; Hong-Jie WANG ; Li-Xin YANG ; Yan-Yan ZHOU ; Hai-Yu ZHAO ; Ming-Li LI ; Bao-Lin BIAN ; Hua-Kai WU ; Hua-Ying ZHU ; Nan SI ; Ling HAN
China Journal of Chinese Materia Medica 2022;47(16):4372-4376
The present study established an RP-HPLC method for simultaneous determination of two active components in Qingfei Paidu Granules and investigated the transfer rates of neohesperidin and naringin in the preparation process to provide references for improving the quality control standard and production of Qingfei Paidu Granules.RP-HPLC was performed on a YMC Triart C_(18) column(4.6 mm×150 mm, 5 μm)with column temperature of 30 ℃, acetonitrile(A) and 0.2% phosphoric acid solution(B) as mobile phases for gradient elution at a flow rate of 1.0 mL·min~(-1) and detection wavelength of 284 nm.Good linearity was observed for naringin at 0.10-1.0 μg(R~2=0.999 9) and neohesperidin at 0.12-1.2 μg(R~2=0.999 9).The average recovery of naringin was 99.52% with an RSD of 1.2%, and that of neohesperidin was 100.8% with an RSD of 1.2%.The transfer rates of naringin and neohesperidin between medicinal materials, extracts, concentrates, and granules were measured by this method.The average transfer rate of naringin from medicinal materials to granules was 54.89%±4.38%, and that of neohesperidin was 57.63%±5.88%.The process from medicinal materials to extracts was presumedly the key link affecting the whole preparation process.The established method is simple and sensitive and can be adopted for the quality control of Qingfei Paidu Granules.Meanwhile, it can be used to investigate the transfer rate of neohesperidin and naringin in the preparation of Qingfei Paidu Granules, and further improve the quality control standard of Aurantii Fructus Immaturus in Qingfei Paidu Granules.
Chromatography, High Pressure Liquid/methods*
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Drugs, Chinese Herbal
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Flavanones
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Hesperidin/analogs & derivatives*
9.Identification and attribution of chemical constituents of Qingfei Paidu Decoction based on UHPLC-LTQ-Orbitrap-MS technology.
Yan-Yan ZHOU ; Wen-Ya GAO ; Xin-Ru GU ; Zhou-Quan CHEN ; Hai-Yu ZHAO ; Bao-Lin BIAN ; Li-Xin YANG ; Nan SI ; Hong-Jie WANG ; Ying TAN
China Journal of Chinese Materia Medica 2020;45(13):3035-3044
UHPLC-LTQ-Orbitrap-MS was developed for the identification of chemical constituents in Qingfei Paidu Decoction, which will clarify its material basis. ACQUITY UHPLC HSS T3 chromatography column(2.1 mm×100 mm, 1.8 μm) was used with 0.1% formic acid(B)-acetonitrile(A) as the mobile phase in gradient elution. The decoction was detected by high-resolution liquid chromatography-mass spectrometry equipped with an ESI ion source in positive and negative mode. Based on the accurate mass measurements, retention time, mass fragmentation patterns combined with comparison of reference and literature reports, a total of 87 major compounds including 43 flavonoids, 9 alkaloids, 4 triterpenoid saponins, 1 sesquiterpene, 2 coumarins, 10 phenolic acids and 18 other compounds were tentatively screened and characterized. UHPLC-LTQ-Orbitrap-MS was employed to comprehensively elucidate the chemical components in Qingfei Paidu Decoction, which basically covered 20 Chinese medicines except gypsum in Qingfei Paidu Decoction. These collective results provide a scientific basis for further research on the quality control standard of Qingfei Paidu Decoction.
Chromatography, High Pressure Liquid
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Coumarins
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analysis
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Drugs, Chinese Herbal
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Flavonoids
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analysis
;
Mass Spectrometry
10.Tissue distribution of Qingfei Paidu Decoction based on HPLC-MS/MS.
Yan ZHANG ; Hai-Yu ZHAO ; Li-Xin YANG ; Yan-Yan ZHOU ; Bao-Lin BIAN ; Hua-Kai WU ; Hua-Ying ZHU ; Nan SI ; Peng-Fei LIN ; Liang WANG ; Hong-Jie WANG
China Journal of Chinese Materia Medica 2023;48(11):3074-3085
The tissue distribution of Qingfei Paidu Decoction was studied by HPLC-MS/MS in vivo. Hypersil GOLD C_(18) column(2.1 mm×50 mm, 1.9 μm) was used for gradient elution with acetonitrile as the mobile phase A and 0.1% formic acid solution as the mobile phase B. High-resolution liquid chromatography-mass spectrometry in both positive and negative ion scanning mode and multiple response monitoring(MRM) mode was employed to analyze the behaviors of the active components of Qingfei Paidu Decoction in diffe-rent tissues. The results showed that 19, 9, 17, 14, 22, 19, 24, and 2 compounds were detected in plasma, heart, liver, spleen, lung, kidney, large intestine, and brain, respectively. The compounds belonged to 8 groups, covering 14 herbs in the prescription. After administration with Qingfei Paidu Decoction, the compounds were rapidly distributed in various tissues, especially in the lung, liver, large intestine, and kidney. The majority of the compounds displayed secondary distribution. This study comprehensively analyzed the distribution rules of the main active components in Qingfei Paidu Decoction and provided a basis for the clinical application.
Chromatography, High Pressure Liquid
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Tandem Mass Spectrometry
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Tissue Distribution
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Drugs, Chinese Herbal