1.The Functional Motif of SARS-CoV S Protein Involved in the Interaction with ACE2
Yi, ZHANG ; Wei, WANG ; Jin-rong, GAO ; Li, YE ; Xiao-nan, FANG ; Ying-chun, ZENG ; Zheng-hui, WU ; Ying-long, SHE ; Lin-bai, YE
Virologica Sinica 2007;22(1):1-7
SARS-CoV is a newly discovery pathogen causing severe acute respiratory problems.It has been established that the S protein in this pathogen plays an important rule in the adsorption and penetration of SARS-CoV into the host cell by interaction with the ACE2 receptor.To determinant which functional motif of the S protein was involved in the interaction with ACE2,seven truncated S proteins deleted from the N or C terminal were obtained by an E.coli expression system and purified by column chromatography to homogeneity.Each truncated S protein was fixed on to the well of an ELISA plate and an interaction was initiated with the ACE2 protein.The adsorption were quantified by ELISA,and the results indicated that amino acids from 388 to 496 of the S protein was responsible for the interaction with the ACE2 receptor,and the interaction could be completely disrupted by an antibody specific to these amino acids.Deletions adjacent to this domain did not appear to have a significant impact on the interaction with ACE2,suggesting that the S protein of SARS-CoV could be developed as a vaccine to prevent the spread of SARS-CoV.
2.The purification of HBV full-length PreS protein in Pichia pastoris.
Xue HAN ; Lin-Bai YE ; Bao-Zong LI ; Ying-Long SHE ; Li YE ; Hong ZHENG ; Bo GAO ; Jin-Rong GAO ; Zheng-Hui WU
Chinese Journal of Biotechnology 2005;21(5):708-712
The Pichia pastoris strain GS115-PreS could produce a high expression level of full-length PreS protein that secreted to the supernatant after methanol induction in the fermentation. The Western blot analysis showed a single band with expected molecular mass of 48kD and that the major component of the particles was the full-length PreS protein (PreS1 + PreS2 + S) and small envelope protein (S) of 48 and 28 kD, respectively. Electron microscopy image showed PreS particles with 30 nm in diameter. The supernatants of the fermentation were desalted and concentrated. Purified PreS protein was obtained by DEAE-SFF anion exchange column chromatography and the PreS particles were obtained by ultracentrifugation and sucrose density gradient. The ELISA assay results proved that both full-length PreS protein and particles showed high immunogenicity and specificity. P/N ratio further demonstrated that the immunogenicity of the particles is higher than the full-length PreS protein.
Hepatitis B Surface Antigens
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biosynthesis
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genetics
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Hepatitis B virus
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immunology
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Humans
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Pichia
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genetics
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metabolism
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Protein Precursors
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biosynthesis
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genetics
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Recombinant Proteins
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biosynthesis
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genetics
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immunology
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isolation & purification
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Viral Envelope Proteins
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biosynthesis
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genetics
3.Detecting the spectrum of multigene mutations in non-small cell lung cancer by Snapshot assay.
Jian SU ; Xu-Chao ZHANG ; She-Juan AN ; Wen-Zhao ZHONG ; Ying HUANG ; Shi-Liang CHEN ; Hong-Hong YAN ; Zhi-Hong CHEN ; Wei-Bang GUO ; Xiao-Sui HUANG ; Yi-Long WU
Chinese Journal of Cancer 2014;33(7):346-350
As molecular targets continue to be identified and more targeted inhibitors are developed for personalized treatment of non-small cell lung cancer (NSCLC), multigene mutation determination will be needed for routine oncology practice and for clinical trials. In this study, we evaluated the sensitivity and specificity of multigene mutation testing by using the Snapshot assay in NSCLC. We retrospectively reviewed a cohort of 110 consecutive NSCLC specimens for which epidermal growth factor receptor (EGFR) mutation testing was performed between November 2011 and December 2011 using Sanger sequencing. Using the Snapshot assay, mutation statuses were detected for EGFR, Kirsten rate sarcoma viral oncogene homolog (KRAS), phosphoinositide-3-kinase catalytic alpha polypeptide (PIK3CA), v-Raf murine sarcoma viral oncogene homolog B1 (BRAF), v-ras neuroblastoma viral oncogene homolog (NRAS), dual specificity mitogen activated protein kinase kinase 1 (MEK1), phosphatase and tensin homolog (PTEN), and human epidermal growth factor receptor 2 (HER2) in patient specimens and cell line DNA. Snapshot data were compared to Sanger sequencing data. Of the 110 samples, 51 (46.4%) harbored at least one mutation. The mutation frequency in adenocarcinoma specimens was 55.6%, and the frequencies of EGFR, KRAS, PIK3CA, PTEN, and MEK1 mutations were 35.5%, 9.1%, 3.6%, 0.9%, and 0.9%, respectively. No mutation was found in the HER2, NRAS, or BRAF genes. Three of the 51 mutant samples harbored double mutations: two PIK3CA mutations coexisted with KRAS or EGFR mutations, and another KRAS mutation coexisted with a PTEN mutation. Among the 110 samples, 47 were surgical specimens, 60 were biopsy specimens, and 3 were cytological specimens; the corresponding mutation frequencies were 51.1%, 41.7%, and 66.7%, respectively (P = 0.532). Compared to Sanger sequencing, Snapshot specificity was 98.4% and sensitivity was 100% (positive predictive value, 97.9%; negative predictive value, 100%). The Snapshot assay is a sensitive and easily customized assay for multigene mutation testing in clinical practice.
Adenocarcinoma
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genetics
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Carcinoma, Non-Small-Cell Lung
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genetics
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Class I Phosphatidylinositol 3-Kinases
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Genes, erbB-1
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Genes, erbB-2
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Genes, ras
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Humans
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Mutation
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PTEN Phosphohydrolase
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Phosphatidylinositol 3-Kinases
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Proto-Oncogene Proteins
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Proto-Oncogene Proteins B-raf
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Proto-Oncogene Proteins p21(ras)
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Retrospective Studies
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ras Proteins
4.Study on seed quality test and quality standard of Lonicera macranthoides.
Ying ZHANG ; Jin XU ; Long-Yun LI ; Guang-Lin CUI ; Yue-Hui SHE
China Journal of Chinese Materia Medica 2016;41(8):1439-1445
Referring to the rules for agricultural seed testing (GB/T 3543-1995) issued by China, the test of sampling, purity, thousand seed weight, moisture, viability, relative conductivity and germination rate had been studied for seed quality test methods of Lonicera macranthoides. The seed quality from 38 different collection areas was measured to establish quality classification standard by K-means clustering. The results showed that at least 7.5 g seeds should be sampled, and passed 20-mesh sieve for purity analysis.The 500-seed method used to measure thousand seed weight. The moisture was determined by crushed seeds dried in high temperature (130±2) ℃ for 3 h.The viability determined by 25 ℃ 0.1% TTC stained 5h in dark. 1.0 g seeds soaked in 50 ml ultra pure water in 25 ℃ for 12 hours to determine the relative conductivity. The seed by 4 ℃stratification for 80 days were cultured on paper at 15 ℃. Quality of the seeds from different areas was divided into three grades. The primary seed quality classification standard was established.The I grade and II grade were recommend use in production.
5.Study on influence factors of seed germination and seeding growth of Lonicera macranthoides.
Jin XU ; Ying ZHANG ; Guang-Lin CUI ; Yue-Hui SHE ; Long-Yun LI
China Journal of Chinese Materia Medica 2016;41(1):51-55
In order to improve reproductive efficiency and quality standard, the influence factors of seed germination and seeding growth of Lonicera macranthoides werew studied. The fruit and seed morphological characteristics of L. macranthoides were observed, the seed water absorbing capacity was determined, and different wet sand stratification time, temperature and germination bed treatment were set up. The effects of the parameters on seed germination and seedling growth were analysed. There was no obstacles of water absorption on L. macranthoides seed, quantity for 22 h water absorption was close to saturation. In the first 80 d, with the increase of the stratification time, seed initial germination time was shortened, germination rate and germination potential was improved. Stratification for 100 d, germination rate decreased. At 15 ℃, seed germination and seedling growth indicators were the best. The seedling cotyledon width in light was significantly higher than that in dark. Seeds on the top of paper and top of sand germination rate, germination potential, and germination index was significantly higher than that of other germination bed and mildew rate is low. The optimal conditions of seeds germination test was stratified in 4 ℃ wet sand for 80 d, 15 ℃ illuminate culture on the top of paper or top of sand. The first seeding counting time was the 4th day after beginning the test, the final time was the 23th day. The germination potential statistical time was the 13th day after beginning the test.