1.Advances in metabolic engineering of methylotrophic yeasts.
Linhui GAO ; Peng CAI ; Yongjin J ZHOU
Chinese Journal of Biotechnology 2021;37(3):966-979
Methylotrophic yeasts are considered as promising cell factories for bio-manufacturing due to their several advantages such as tolerance to low pH and high temperature. In particular, their methanol utilization ability may help to establish a methanol biotransformation process, which will expand the substrate resource for bio-refinery and the product portfolio from methanol. This review summarize current progress on engineering methylotrophic yeasts for production of proteins and chemicals, and compare the strengths and weaknesses with the model yeast Saccharomyces cerevisiae. The challenges and possible solutions in metabolic engineering of methylotrophic yeasts are also discussed. With the developing efficient genetic tools and systems biology, the methylotrophic yeasts should play more important roles in future green bio-manufacturing.
Metabolic Engineering
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Methanol
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Saccharomyces cerevisiae/genetics*
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Yeasts
2.Identification of microorganism from traditional Chinese medicine Massa Medicata Fermentata.
Lixia ZHANG ; Wenyuan GAO ; Haiyang WANG
China Journal of Chinese Materia Medica 2012;37(13):1928-1931
OBJECTIVETo identify the yeast strains isolated from Massa Medicata Fermentata samples that sold in markets.
METHODThe strains were identified through conventional classification methods including colony characteristics, cell morphology, physiological and biochemical properties, as well as 26S rDNA sequence analysis.
RESULTThe isolated strains Y1, Y3, Y4, Y5 were Cryptococcus albidus, Saccharomyces cerevisiae, Pichia kudriavzevii, Endomyces fibuliger, respectively.
CONCLUSIONAfter fermentation the Massa Medicata Fermentata samples contained a variety of yeast species. Yeasts were the main contribution microorganism of the fermentation process.
Fermentation ; Medicine, Chinese Traditional ; Yeasts ; chemistry ; classification ; genetics ; isolation & purification
3.Biosynthesis of natural products by non-conventional yeasts.
Zhilan QIAN ; Lili SONG ; Qi LIU ; Xiulong GONG ; Yijia KANG ; Ziyu HE ; Haoyu LONG ; Menghao CAI
Chinese Journal of Biotechnology 2023;39(6):2284-2312
Non-conventional yeasts such as Yarrowia lipolytica, Pichia pastoris, Kluyveromyces marxianus, Rhodosporidium toruloides and Hansenula polymorpha have proven to be efficient cell factories in producing a variety of natural products due to their wide substrate utilization spectrum, strong tolerance to environmental stresses and other merits. With the development of synthetic biology and gene editing technology, metabolic engineering tools and strategies for non-conventional yeasts are expanding. This review introduces the physiological characteristics, tool development and current application of several representative non-conventional yeasts, and summarizes the metabolic engineering strategies commonly used in the improvement of natural products biosynthesis. We also discuss the strengths and weaknesses of non-conventional yeasts as natural products cell factories at current stage, and prospects future research and development trends.
Yeasts/genetics*
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Yarrowia/metabolism*
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Gene Editing
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Metabolic Engineering
4.Yeast cell surface display and its application of enzymatic synthesis in non-aqueous phase.
Shuangyan HAN ; Huazhen LI ; Zi JIN ; Dengfeng HUANG ; Changqiong REN ; Ying LIN
Chinese Journal of Biotechnology 2009;25(12):1784-1788
Yeast surface display involves that the exogenous protein, which was fused with the yeast outer shell cell wall protein, was genetically anchored on the yeast cell surface. It has been widely used in expression and screening of functional protein. Here, we focused on the construction of lipase-displaying systems and its application in enzymatic biosynthesis, such as fatty acid methyl esters, short-chain flavour esters and sugar esters applications, and so on.
Candida
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enzymology
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genetics
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Lipase
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biosynthesis
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genetics
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Pichia
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enzymology
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genetics
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Recombinant Proteins
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biosynthesis
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genetics
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Solvents
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Yeasts
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enzymology
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genetics
5.Advances in metabolic engineering of non-conventional yeasts.
Liqiu SU ; Ge ZHANG ; Zhen YAO ; Peixin LIANG ; Zongjie DAI ; Qinhong WANG
Chinese Journal of Biotechnology 2021;37(5):1659-1676
Over the past 30 years, Yarrowia lipolytica, Kluyveromyces, Pichia, Candida, Hansenula and other non-conventional yeasts have attracted wide attention because of their desirable phenotypes, such as rapid growth, capability of utilizing multiple substrates, and stress tolerance. A variety of synthetic biology tools are being developed for exploitation of their unique phenotypes, making them potential cell factories for the production of recombinant proteins and renewable bio-based chemicals. This review summarizes the gene editing tools and the metabolic engineering strategies recently developed for non-conventional yeasts. Moreover, the challenges and future perspectives for developing non-conventional yeasts into efficient cell factories for the production of useful products through metabolic engineering are discussed.
Gene Editing
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Metabolic Engineering
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Pichia/genetics*
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Synthetic Biology
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Yarrowia/genetics*
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Yeasts
7.Screening of the genes of hepatitis B virus PreS2 interacting proteins.
Yin-ying LU ; Ke LI ; Lin WANG ; Yan LIU ; Ye-dong WANG ; Jun CHENG ; Ling-xia ZHANG
Chinese Journal of Hepatology 2003;11(1):8-10
OBJECTIVETo screen and clone the genes of proteins in hepatocytes interacting with hepatitis B virus (HBV) PreS2 by yeast-two hybridization technique.
METHODSThe HBV PreS2 gene was amplified by polymerase chain reaction (PCR) and HBV PreS2 bait plasmid was constructed by using yeast-two hybridization system 3, then transformed into yeast AH109, followed by mating with yeast Y187 containing liver cDNA library plasmid in 2 YPDA medium. Diploid yeast was plated on synthetic dropout nutrient medium (SD/-Trp-Leu-Ade-His) and synthetic dropout nutrient medium (SD/-Trp-Leu-Ade-His) containing X-alpha-gal for selecting positive blue clones, then amplified by PCR, sequenced, and performed bioinformatics analysis.
RESULTSHBV PreS2 gene was cloned successfully and expressed in yeast AH109.Twenty-six positive colonies were selected, among them, twelve containing metallothionein 2A, one cytochrome C oxidase II, two cytochrome P450 subfamily IV4F, two cytochrome c oxidase subunit 4 isoform 1, three albumin (ALB), one Na(+)K(+) transporting ATPase beta-1 polypeptide, two prealbumin, one lectin galactoside-binding subunit, and Two new genes with unknown function.
CONCLUSIONGenes of HBV PreS2 interacting proteins have been successfully cloned, which brings some new clues for studying the biological functions of HBV PreS2 and related proteins.
Cloning, Molecular ; Hepatitis B Surface Antigens ; genetics ; physiology ; Plasmids ; Protein Precursors ; genetics ; physiology ; Two-Hybrid System Techniques ; Yeasts ; genetics
9.Heterogenous expression of antimicrobial peptides.
Shanshan SONG ; Guobin HU ; Xianzhi DONG
Journal of Biomedical Engineering 2009;26(6):1372-1375
Antimicrobial peptides (AMPs), a class of short proteins with a broad spectrum of antibacterial activities, are isolated from a wide variety of animals, both vertebrates and invertebrates, and plants as well as from bacteria and fungi. They are a key component of the innate immune response in most multicellular organisms. Owing to their potent, broad-spectrum antibacterial activities and uneasy developing of drug resistance, these peptides are of great clinical significance. However, preparation of AMPs at a large scale is a severe challenge to the development of the commercial products. Undoubtedly, construction of high-level biological expression systems for the production of AMPs is the key in its clinical application process. Herein, we summarize the progress in researches on heterogenous expression of AMPs in prokaryotic expression systems and eukaryotic expression systems.
Animals
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Antimicrobial Cationic Peptides
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biosynthesis
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chemistry
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genetics
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Escherichia coli
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genetics
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metabolism
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Genetic Vectors
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genetics
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Insecta
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genetics
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metabolism
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Recombinant Proteins
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biosynthesis
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genetics
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Yeasts
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genetics
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metabolism
10.Transcriptional activation function of hepatitis B virus Pre S1 protein in yeast.
Shengxiang XIAO ; Yonglie CHU ; Xuanxian PENG ; Cuiling WANG ; Shengbin XIAO ; Yanhong WU ; Zhenping CAO
Chinese Journal of Experimental and Clinical Virology 2002;16(2):154-156
BACKGROUNDTo explore the feasibility of cloning of the hepatocyte receptor interacting with the Pre S1 protein of HBV by two hybrid system.
METHODSYeast expression plasmids encoding fusion proteins of full length or portions of Pre S1 of HBV and DNA binding domain of yeast protein GAL4 were constructed and used to transform yeast reporter strain SFY526. Reporter gene product ?galactosidase activity was assayed as a measure of transcription activation in yeast. Mammalian expression plasmid encoding fusion proteins of full length Pre S1 and DNA binding domain of GAL4 was constructed and used to cotransfect hepatoma cell line Huh?7 together with CAT reporter plasmid. Cell extracts were assayed for CAT activity by thin?layer chromatography.
RESULTSThe fusion proteins of full length Pre S1 protein and GAL4 DNA binding domain present transcriptional activation function in yeast. The transcription activating sequence is localized to the 21 to 47 amino acids of Pre S1 protein Fusion proteins of full length Pre S 1 and GAL 4 DNA binding domain do not show transcriptional activation function in mammalian cells.
CONCLUSIONThe transcriptional activating sequence of HBVPre S1 protein in yeast overlaps the hepatocyte receptor binding site. The transcriptional activation function of HBV Pre S1 protein in yeast may prevent researchers?from using yeast two hybrid system to clone HBV receptor interacting with Pre S1 protein. However, the Pre S1 protein does not show transcriptional activation function in mammalian cells. Mammalian two?hybrid system may be a practical method to clone the HBV hepatocyte receptor interacting with Pre S1 protein.
DNA-Binding Proteins ; genetics ; Fungal Proteins ; genetics ; Hepatitis B Surface Antigens ; genetics ; Humans ; Protein Precursors ; genetics ; Recombinant Fusion Proteins ; genetics ; Transcriptional Activation ; Tumor Cells, Cultured ; Yeasts