1.Production of carboxylic acids by metabolically engineered Yarrowia lipolytica: a review.
Lanxin RONG ; Shiqi LIU ; Kun ZHU ; Jing KONG ; Lin MIAO ; Shuhui WANG ; Dongguang XIAO ; Aiqun YU
Chinese Journal of Biotechnology 2022;38(4):1360-1372
Yarrowia lipolytica is a non-conventional yeast with unique physiological and metabolic characteristics. It is suitable for production of various products due to its natural ability to utilize a variety of inexpensive carbon sources, excellent tolerance to low pH, and strong ability to secrete metabolites. Currently, Y. lipolytica has been demonstrated to produce a wide range of carboxylic acids with high efficiency. This article summarized the progress in engineering Y. lipolytica to produce various carboxylic acids by using metabolic engineering and synthetic biology approaches. The current bottlenecks and solutions for high-level production of carboxylic acids by engineered Y. lipolytica were also discussed, with the aim to provide useful information for relevant studies in this field.
Carboxylic Acids/metabolism*
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Metabolic Engineering
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Synthetic Biology
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Yarrowia/metabolism*
2.Biosynthesis of natural products by non-conventional yeasts.
Zhilan QIAN ; Lili SONG ; Qi LIU ; Xiulong GONG ; Yijia KANG ; Ziyu HE ; Haoyu LONG ; Menghao CAI
Chinese Journal of Biotechnology 2023;39(6):2284-2312
Non-conventional yeasts such as Yarrowia lipolytica, Pichia pastoris, Kluyveromyces marxianus, Rhodosporidium toruloides and Hansenula polymorpha have proven to be efficient cell factories in producing a variety of natural products due to their wide substrate utilization spectrum, strong tolerance to environmental stresses and other merits. With the development of synthetic biology and gene editing technology, metabolic engineering tools and strategies for non-conventional yeasts are expanding. This review introduces the physiological characteristics, tool development and current application of several representative non-conventional yeasts, and summarizes the metabolic engineering strategies commonly used in the improvement of natural products biosynthesis. We also discuss the strengths and weaknesses of non-conventional yeasts as natural products cell factories at current stage, and prospects future research and development trends.
Yeasts/genetics*
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Yarrowia/metabolism*
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Gene Editing
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Metabolic Engineering
3.Advances in abscisic acid biosynthesis.
Kexin LI ; Ying WANG ; Mingdong YAO ; Wenhai XIAO
Chinese Journal of Biotechnology 2023;39(6):2190-2203
Abscisic acid, a plant hormone that inhibits growth, is a key factor in balancing plant endogenous hormones and regulating growth and metabolism. Abscisic acid can improve the drought resistance and salt tolerance of crops, reduce fruit browning, reduce the incidence rate of malaria and stimulate insulin secretion, so it has a broad application potential in agriculture and medicine. Compared with traditional plant extraction and chemical synthesis, abscisic acid synthesis by microorganisms is an economic and sustainable route. At present, a lot of progress has been made in the synthesis of abscisic acid by natural microorganisms such as Botrytis cinerea and Cercospora rosea, while the research on the synthesis of abscisic acid by engineered microorganisms is rarely reported. Saccharomyces cerevisiae, Yarrowia lipolytica and Escherichia coli are common hosts for heterologous synthesis of natural products due to their advantages of clear genetic background, easy operation and friendliness for industrial production. Therefore, the heterologous synthesis of abscisic acid by microorganisms is a more promising production method. The author reviews the research on the heterologous synthesis of abscisic acid by microorganisms from five aspects: selection of chassis cells, screening and expression enhancement of key enzymes, regulation of cofactors, enhancement of precursor supply and promotion of abscisic acid efflux. Finally, the future development direction of this field is prospected.
Abscisic Acid/metabolism*
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Plant Growth Regulators/metabolism*
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Plants/metabolism*
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Yarrowia/metabolism*
4.The recent advances in developing gene editing and expression tools and the synthesis of natural products in Yarrowia lipolytica.
Jinhong ZHANG ; Zhiyong CUI ; Qingsheng QI ; Jin HOU
Chinese Journal of Biotechnology 2022;38(2):478-505
Yarrowia lipolytica, as an important oleaginous yeast, has been widely used in metabolic engineering. Y. lipolytica is considered as an ideal host for the production of natural products such as terpenes, polyketides and flavonoids, due to its ability to utilize a variety of hydrophobic substrates, high stress tolerance to acid and salt, high flux of tricarboxylic acid cycle and the ability in providing abundant the common precursor acetyl-CoA. Recently, more and more tools for genetic editing, gene expression and regulation has been developed in Y. lipolytica, which facilitate the metabolic engineering of Y. lipolytica for bio-manufacturing. In this review, we summarized the recent progresses in developing gene expression and natural product synthesis in Y. lipolytica, and also discussed the challenges and possible solutions in heterologous synthesis of natural products in this yeast.
Biological Products/metabolism*
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Gene Editing
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Metabolic Engineering
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Polyketides/metabolism*
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Yarrowia/metabolism*
5.Expression of phytase gene phyA in Yarrowia lipolytica po1h.
Yun CHEN ; You ZOU ; Yiding WANG ; Lixin MA
Chinese Journal of Biotechnology 2010;26(5):610-615
Using the polymmerse chain reaction (PCR), we amplified the phytase gene phyA from Pichia pastoris GS115-phyA in Aspergillus niger NRRL3135 without the signal peptide sequence and intron sequence,. Then, it was cloned into pINA1297 vector to generate a recombinant vector of pINA1297-phyA. pINA1297-phyA was linearized and transformed into Yarrowia lipolytica po1h by the lithium acetate method. The positive transformants were obtained by YNB(casa) and PPB plates, after induced in YM medium at 28 degrees C for 6 day. The activity of the expressed phytase phyA reached 636.23 U/mL. The molecular weight of the enzyme was 130 kDa measured with SDS-PAGE analysis, whereas its molecular size reduced to 51 kDa after deglycosylation which is correspond with theoretical value. The enzymatic analysis of the recombinant phytase phyA revealed its optimal pH and temperature was 5.5 and 55 degrees C, which had high activity after incubated in pH ranged from 2.0 to 8.0 for 1 h. Moreover, its activity remained 86.08% after exposure to 90 degrees C for 10 min. It also was resistant to pepsin or trypsin treatment.
6-Phytase
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biosynthesis
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genetics
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Aspergillus niger
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genetics
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metabolism
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Pichia
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enzymology
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genetics
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Recombinant Proteins
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biosynthesis
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genetics
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Yarrowia
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genetics
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metabolism
6.Progress in microbial production of alpha-ketoglutarate.
Hongwei GUO ; Guocheng DU ; Jingwen ZHOU ; Jian CHEN
Chinese Journal of Biotechnology 2013;29(2):141-152
Alpha-ketogluratate is one of the key intermediates in the TCA cycle, playing an important role in the connection of carbon and nitrogen metabolism. This article aims at stating recent research progress in the production of alpha-ketoglutarate by microbial fermentation. First, a large group of microbes have been screened to accumulate alpha-ketoglutarate including prokaryotes and eukaryotes. Second, physiological characterization of over-accumulation of alpha-ketoglutarate is caused by thiamine defect and nitrogen starvation. Third, the process of fermentation was controlled and optimized by the manipulation of pH, dissolved oxygen and cofactors. Fourth, many metabolic engineering strategies were also presented for alpha-ketoglutarate production focusing on regeneration of cofactor and manipulation of the pathway. Last, we discussed the limitation of current progress and proposed the future research needs for microbial production of alpha-ketoglutarate.
Bacteria
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growth & development
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metabolism
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Fermentation
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Fungi
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growth & development
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metabolism
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Industrial Microbiology
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methods
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Ketoglutaric Acids
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metabolism
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Metabolic Engineering
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Yarrowia
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growth & development
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metabolism