1.Sequence Generation and Genotyping of 15 Autosomal STR Markers Using Next Generation Sequencing.
Eun Hye KIM ; Sang Eun JUNG ; Kyoung Jin SHIN ; Woo Ick YANG ; In Seok YANG
Korean Journal of Legal Medicine 2014;38(2):48-58
Recently, next generation sequencing (NGS) has received attention as the ultimate genotyping method to overcome the limitations of capillary electrophoresis (CE)-based short tandem repeat (STR) analysis, such as the limited number of STR loci that can be measured simultaneously using fluorescent-labeled primers and the maximum size of STR amplicons. In this study, we analyzed 15 autosomal STR markers via the NGS method and evaluated their effectiveness in STR analysis. Using male and female standard DNA as single-sources and their 1:1 mixture, we sequentially generated sample amplicons by the multiplex polymerase chain reaction (PCR) method, constructed DNA libraries by ligation of adapters with a multiplex identifier (MID), and sequenced DNA using the Roche GS Junior Platform. Sequencing data for each sample were analyzed via alignment with pre-built reference sequences. Most STR alleles could be determined by applying a coverage threshold of 20% for the two single-sources and 10% for the 1:1 mixture. The structure of the STR in each allele was accurately determined by examining the sequences of the target STR region. The mixture ratio of the mixed sample was estimated by analyzing the coverage ratios between assigned alleles at each locus and the reference/variant ratios from the observed sequence variations. In conclusion, the experimental method used in this study allowed the successful generation of NGS data. In addition, the NGS data analysis protocol enables accurate STR allele call and repeat structure determination at each locus. Therefore, this approach using the NGS system will be helpful to interpret and analysis the STR profiles from singe-source and even mixed samples in forensic investigation.
Alleles
;
DNA
;
Electrophoresis, Capillary
;
Female
;
Gene Library
;
Humans
;
Ligation
;
Male
;
Microsatellite Repeats
;
Multiplex Polymerase Chain Reaction
;
Statistics as Topic
2.Exploring the Characteristics of Interpersonal Problems Based on Medical Students' Personality Types.
Eun Kyung KIM ; Eun Bae YANG ; Se Jin KIM
Korean Journal of Medical Education 2007;19(2):143-151
PURPOSE: Medical students are exposed to various interpersonal relationships with patients, faculty and colleagues. Therefore, a clear understanding of their personality types and interpersonal problems is vital in creating an appropriate educational program for medical students. This study intends to explore the characteristics of interpersonal problems based on medical students' personality types. METHODS: The Myers-Briggs type inventory(MBTI) and Korean Inventory of Interpersonal Problems were used to assess the first-year medical students at Yonsei University College of Medicine, 2006. RESULTS: The personality types focusing on the interpersonal domain showed that the medical students could be categorized into four types: analytical type(47.2%), driving type(30.3%), amiable type(12.4%), and expressive type(10.1%). The characteristics of interpersonal problems data were within normal range. The relationship between the personality indicator and the characteristics of interpersonal problems is statistically significant in extraversion-introversion. CONCLUSION: Our results demonstrate that the personality factors of medical students are correlated to the interpersonal problems they face. Thus, educational programs that take into account personality types and characteristics of interpersonal problems are crucial in providing high-quality medical education.
Education, Medical
;
Humans
;
Reference Values
;
Students, Medical
3.Prenatal Diagnosis of Pulmonary Atresia with Intact Ventricular Septum.
Han Jeong YANG ; Eun Kyung LEE ; In Kyu KIM
Korean Journal of Perinatology 2001;12(3):315-320
No abstract available.
Prenatal Diagnosis*
;
Pulmonary Atresia*
;
Ventricular Septum*
4.Early Polyethylene Wear following TKA: A Report of Three Cases.
Jung Man KIM ; Yang Guk CHUNG ; Jin Suk EUN
Journal of the Korean Knee Society 1999;11(1):122-127
Polyethylene wear is one of the major problems following total knee arthroplasty. Many factors affect the degree and the pattern of polyethylene wear. We experienced three cases of early catastrophic poly- ethylene wears. All cases showed flexion contracture with severe genu varum deformity and total knee arthroplasty was performed with Advantim total knee prostheses in all cases. Postoperatively, bony align- ment and ligament balancing were good in all cases. However, in 12 to 22 months later, lateral subluxa- tion and valgus instability were developed with early catastrophic polyethylene wear especially in the medial compartments. Flat surface geornetry of polyethylene might be responsible for the development of lateral subluxation and early catastrophic wears. From these experience, we concluded that the mediolat- eral as well as anteroposterior dishing is essential for the stability of the artificial joint and prevention of early rapid wear of polyethylene articular inserts following total knee arthroplasty.
Arthroplasty
;
Congenital Abnormalities
;
Contracture
;
Genu Varum
;
Joints
;
Knee
;
Knee Prosthesis
;
Ligaments
;
Polyethylene*
5.EXPRESSION OF TGF-alpha AND TGF-beta
Hee Chang YANG ; Dong Keun LEE ; Eun Cheol KIM
Journal of the Korean Association of Maxillofacial Plastic and Reconstructive Surgeons 1997;19(4):414-434
9,10-Dimethyl-1,2-benzanthracene
;
Animals
;
Carcinogenesis
;
Carcinoma in Situ
;
Carcinoma, Squamous Cell
;
Cricetinae
;
Cytoplasm
;
Epigenomics
;
Epithelium
;
Islands
;
Mineral Oil
;
Mouth Neoplasms
;
Mucous Membrane
;
Prognosis
;
Transforming Growth Factor alpha
;
Transforming Growth Factor beta
;
Transforming Growth Factors
6.Two Case of Systemic Candidiasis in Premature Infants.
Dae Kyun KIM ; Woo Chul SUH ; Eun Gyeoung JUNG ; Eun Seok YANG ; Sang Kee PARK
Journal of the Korean Pediatric Society 1995;38(11):1558-1564
No abstract available.
Candidiasis*
;
Humans
;
Infant, Newborn
;
Infant, Premature*
7.Antimicrobial Effects of Nano-Silver Gauze against Common Bacterial Isolates.
Sun Min LEE ; Eun Kyoung YANG ; Eun Yup LEE ; Yeong Dae KIM ; Chulun L CHANG
Korean Journal of Nosocomial Infection Control 2006;11(2):87-91
BACKGROUND: Silver has been used for disinfection and sterilization. We aimed to confirm the in-vitro antibacterial effects of nanocrystalline silver-coated gauze. METHODS: Fourteen clinical isolates each of Escherichia coli and Acinetobacter baumannii were used. Bacterial suspensions made in tryptic soy broth were exposed to Ordinary and silver-coated gauze. Bacteria were then harvested from the gauze immediately and after 24 h incubation, cultured on blood agar plates and eunmerated for viable counts. The number of colonies was converted into common logarithms for comparison. RESULTS: The number of colonies recovered from silver-coated gauze was significantly lower than those recovered from ordinary gauze when harvested immediately after exposure (E. coli, 3.06 vs 1.73; A. baumannii, 3.13 vs 1.98; P<0.001). After 24 h incubation of exposed gauze, silver-coated gauze produced less than 1 CFU/mL, whereas ordinary gauze produced a number of colonies significantly higher than it did immediately after exposure (E. coli, 4.13; A. baumannii, 4.46; P<0.001). Conclusion: Compared with ordinary gauze, silver-coated gauze was shown to have 99.99% antibacterial effect.
Acinetobacter baumannii
;
Agar
;
Bacteria
;
Disinfection
;
Escherichia coli
;
Silver
;
Sterilization
;
Suspensions
8.A Case of Leukemia Cutis.
Eun Seok YANG ; Eun Young KWAK ; Kang Rhun KOO ; Kang Ho KIM ; Young Bong PARK
Journal of the Korean Pediatric Society 1990;33(2):246-251
No abstract available.
Leukemia*
9.A clinical study on neonatal exchange transfusion.
Eun Ju PARK ; Eun Eui KIM ; Yang Sook CHOI ; Son Sang SEO
Journal of the Korean Pediatric Society 1993;36(4):469-477
Clinical observation was performed on 81 cases who were received exchange transfusion at Ilsin Christian Hospital from January, 1986 to Decrmber, 1990. The results obtained were as follows: 1) Among 6,388 cases of neonatal jaundice, the exchange transfusion was performed on 81 cases (1.27%). 2) There was no sex predominance (male 40, female 41). The birth weight of 75 cases(92.6%) ranged from 2,500 gm 4,000 gm. 3) The most predominant delivery type was normal vaginal delivery (66 cases, 81.5%). Instrumental delivery was 9 cases (11.1%) that was higher than control group (4.2%). 4) Analysing the exchanged 81 cases, sepsis accounted for 28 cases (34.6%) of the total exchanged group:ABO incompatibility 25 cases (30.9%), complicated causes 13 cases(16.0%), unknown causes 12 cases (14.8%) and Rh incompatibility 1 cases (1.2%). 5) Repeated exchange transfusion was required in 12 cases (16.0%). 6) In 20 cases (24.7%), exchange transfusion was performed on 7 days or more after birth. In 4 cases (4.9%), including 1 cases of Rh incompatibility, exchange transfusion was done within 24 hours after birth. 7) The most common organism of sepsis, which was the most predominant etiology of exchange transfusion was E. coli in 12 cases (31.5%). 8) After exchange transfusion, serum bilirubin, Hb and reticulocyte count were decreased by 24%, 22% and 36%, respectively.
Bilirubin
;
Birth Weight
;
Female
;
Humans
;
Infant, Newborn
;
Jaundice, Neonatal
;
Parturition
;
Reticulocyte Count
;
Sepsis
10.MRI of the temporomandibular joint using flip back spin echo technique.
Eun Ha KIM ; Yun Ju KIM ; Chang Soo KIM ; Chun Phil CHUNG ; Yang Sook KIM
Journal of the Korean Radiological Society 1993;29(4):656-664
The authors introduced flip back spin echo (FBSE) technique for MR imaging of the temporomandibular joint (TMJ) instead of conventional spin echo (SE) technique, and evaluated whether FBSE technique in MRI of TMJ is adequate for the diagnosis of the disorders or not. FBSE T1 parasagittal images in closed mouth state and sequential opening and closing mouth states using patient's own finger(s) were obtained and then FBSE T1 paracoronal image in closed mouth state and STAGE(short tip angle gradient echo) parasagittal T2WI were followed. All 30 images of the symptomatic TMJs using FBSE technique were excellent in the visualization of articular and their displacement, and we could easily diagnose the internal derangement. FBSE technique was adequate for the diagnosis of internal derangement of the TMJ, and the modified cine display from images using FBSE technique was advantageous in the diagnosis of the disorders by visualization of the dynamic motion of the TMJ.
Diagnosis
;
Magnetic Resonance Imaging*
;
Mouth
;
Temporomandibular Joint*