1.Application of Ion Torrent PGM™ System in Detection of Fetal DNA in Maternal Plasma.
Ya-nan LIU ; Xue-ying ZHAO ; Yuan PING ; Qing-wen XU ; Jiang-ping HUANG ; Kai-nan ZOU ; Huai-gu ZHOU
Journal of Forensic Medicine 2015;31(6):432-435
OBJECTIVE:
To explore the feasibility of detecting of Y-STR of fetal DNA in maternal plasma using Ion Torrent PGM™ System.
METHODS:
A total of 16 fetal DNA samples from maternal plasmas (8 cases from 38 weeks gestational age and 8 ones from 12 weeks) were prepared and a multiplex assay with 7 STR loci (DYS390, DYS391, DYS393, DYS438, DYS437, DYS456, DYS635) was designed for multiplex-PCR amplification. Using Ion Torrent PGM™ System, the results of Y-STR sequences and capillary electrophoresis were obtained and compared.
RESULTS:
Y-STR specific alleles were detected in the maternal plasma of all the pregnant women having male babies of second and third trimester, which were higher than that detected by capillary electrophoresis. Consistent Y-STR genotypes were observed between fetal DNA from maternal plasma and genomic DNA from the newborn babies.
CONCLUSION
Based on Ion Torrent PGM™ System, the prenatal Y-STR detection method may provide a high-sensitive and high-throughput choice for prenatal STR detection in forensic testing.
Alleles
;
Chromosomes, Human, Y/genetics*
;
DNA/blood*
;
Family
;
Female
;
Fetal Blood/chemistry*
;
Genotype
;
Haplotypes
;
Humans
;
Male
;
Polymerase Chain Reaction
;
Polymorphism, Genetic
;
Pregnancy
;
Sensitivity and Specificity
;
Sex Determination Analysis
;
Tandem Repeat Sequences/genetics*
2.AS-PCR assay for 20 mtDNA SNP typing and haplotype frequency.
Yan-Chai NIE ; Chen ZHANG ; Ya-Nan LIU ; Jiang-Ping HUANG ; Hai-Tao JIAO ; Dan WU ; Huai-Gu ZHOU
Journal of Forensic Medicine 2014;30(2):96-109
OBJECTIVE:
To develop a multiplex allele-specific PCR (AS-PCR) assay with three-color fluorescence labeling for mitochondrial DNA (mtDNA) SNP typing.
METHODS:
Based on the principle of AS-PCR, the primer sets were designed for 20 SNP located on the coding region of mtDNA and divided into 2 groups labeled with FAM and HEX fluorescence, respectively. A primer set included two forward (reverse) allelic specific primers with different sizes and a generic reverse (forward) primer. Blood samples from 200 unrelated individuals were analyzed by AS-PCR and capillary electrophoresis. Three random samples at least for each SNP site were examined and verified by direct sequencing. The haplotype frequency was investigated.
RESULTS:
Distinct electropherograms of 200 blood samples were obtained successfully. The typing results of direct sequencing were identical to those obtained from AS-PCR. The minimum detectable DNA concentration was 0.2 pg under the system of 10 microL. The sensitivity of the DNA concentrations ranged from 0.5 to 5 pg. The 200 individuals were assigned into 15 haplotype, and the haplotype diversity was 0.906 0.
CONCLUSION
AS-PCR is a simple, rapid and efficient method for mtDNA SNP typing, and can be applied to forensic practice.
Alleles
;
DNA
;
DNA Primers
;
DNA, Mitochondrial/analysis*
;
Electrophoresis, Capillary
;
Haplotypes
;
Humans
;
Mitochondria
;
Polymerase Chain Reaction/methods*
;
Polymorphism, Single Nucleotide
;
Sequence Analysis, DNA
3.Construction and application of evaluation system of laparoscopic colorectal surgery based on clinical data mining.
Yao-ze LIANG ; Jiang YU ; Ce ZHANG ; Ya-nan WANG ; Xia CHENG ; Feng HUANG ; Guo-xin LI
Chinese Journal of Gastrointestinal Surgery 2010;13(10):741-744
OBJECTIVETo construct a clinical database for laparoscopic colorectal surgery in Chinese population using computerized technique.
METHODSA clinical database system was constructed and used in multi-/single-center studies on laparoscopic colorectal surgery.
RESULTSThe data of more than 1200 cases in the Nanfang Hospital during the past year were collected retrospectively. The database was used as the platform for "Southern China Laparoscopic Colorectal Surgery Study Group (SCLCSG)" and was used in the first stage of the clinical research of "Multicenter retrospective study of laparoscopic and open procedure for colorectal cancer" among 11 hospitals in Southern China. In order to test the system, the database was also used in "comparative study on oncologic results of laparoscopic versus open radical resection for rectal carcinoma".
CONCLUSIONSThe evaluation system is reliable and efficient. This system has established a clinical database for laparoscopic colorectal cancer surgery and can be widely applied for the clinical research for colorectal cancer.
Colectomy ; Colorectal Neoplasms ; surgery ; Colorectal Surgery ; Data Mining ; Databases, Factual ; Humans ; Laparoscopy ; Treatment Outcome
4.Development and implementation of a clinical data mining system for gastric cancer surgery.
Yan-feng HU ; Jiang YU ; Ce ZHANG ; Ya-nan WANG ; Xia CHENG ; Feng HUANG ; Guo-xin LI
Chinese Journal of Gastrointestinal Surgery 2010;13(7):510-515
OBJECTIVETo develop a clinical database system of gastric cancer surgery integrated with data mining function for better management of clinical data and better performance of both retrospective and prospective studies.
METHODSCore fields for clinical data were determined based on the JGCA(13th and 14th edition) and UICC gastric cancer staging system. Microsoft Visual Basic and VistaDB were used for programming. The database structure was designed according to data mining theory and clinical workflow.
RESULTSAfter one year of development and refinement, data of over 600 patients from our hospital were retrospectively entered, and function tests were satisfactory. This system was accepted as the database platform for the Chinese Laparoscopic Gastrointestinal Surgery Study Group (CLASS) and was successfully used in the first stage of the Multicenter Retrospective Study of the Feasibility of Laparoscopy for Gastric Cancer among 30 hospitals from both Mainland China and Hong Kong. The data mining function met the requirements, which could carry out complex search with visualized presentation. Descriptive analyses could be performed with the analysis function. Efficient communication among institutions could be executed by data import and export with excellent compatibility and without errors.
CONCLUSIONThe system has established a clinical database of approximately 4000 fields with data mining function. This system can be widely applied for the clinical research for gastric cancer.
Data Mining ; Databases, Factual ; Humans ; Software Design ; Stomach Neoplasms ; surgery
5.Activation of platelet-neutrophil mediated by platelet-activating factor.
Nong-Jian GUO ; Ya-Li CHANG ; Dong-Jie XIAO ; Ping HUANG
Journal of Experimental Hematology 2005;13(3):447-451
To investigate the pathophysiological mechanisms for platelet-neutrophils cross talk mediated by platelet-activating factor (PAF) and to lay a foundation for clinical application, ginkgolides B (GB), a PAF receptor antagonist, was added in the whole blood to block the effects of PAF on activation of platelet-neutrophil; PAF and ADP were respectively added in the whole blood to monitor the expression of CD62P on platelet by flow cytometry; PAF and ADP were added in the whole blood to monitor the expression of CD11b on neutrophil by flow cytometry; PAF and ADP were added in the whole blood to monitor the platelet-leucocyte aggregates (PLA) which were PLA in the total leucocyte population (PLA/L) and the mean fluorescence intensity (MFI) of CD42b. Outcomes were analyzed by t-test, and the differences were statistically significant (P < 0.05). The results showed that the expression of CD62P on platelats, the expression of CD11b on neutrophils and PLA formation were all increased by PAF and ADP; the PAF receptor antagonists (GB) could obviously inhibit the expression of CD62P, CD11b and PLA formation induced by PAF, but could not completely inhibit the activation of platelet and neutrophil, and the platelet-neutrophil cross talk; GB could inhibit the expression of CD62P and CD11b induced by ADP, but could not conpletely inhibit the activation of platelet and neutrophli; GB could not obviously inhibit the platelet-leucocyte aggregates mediated by ADP. It is concluded that the multiligand-receptor systems involved in PLA formation and platelet-netrophils cross talk seem to be regulated by complex mechanisms; the PAF receptor antagonists (GB) obviously inhibit the effect of PAF, and may be widely utilized in the therapy of thrombosis and inflammation.
Adenosine Diphosphate
;
pharmacology
;
Adult
;
Blood Platelets
;
cytology
;
drug effects
;
physiology
;
CD11b Antigen
;
blood
;
Cell Adhesion
;
drug effects
;
physiology
;
Cell Communication
;
drug effects
;
physiology
;
Female
;
Flow Cytometry
;
Ginkgolides
;
pharmacology
;
Humans
;
Male
;
Middle Aged
;
Neutrophils
;
cytology
;
drug effects
;
physiology
;
P-Selectin
;
blood
;
Platelet Activating Factor
;
pharmacology
;
Platelet Activation
;
drug effects
;
Platelet Glycoprotein GPIb-IX Complex
;
analysis
;
Platelet Membrane Glycoproteins
;
antagonists & inhibitors
;
physiology
;
Receptors, G-Protein-Coupled
;
antagonists & inhibitors
;
physiology
6.The repair of bulky tissue defect of forearm with skin flaps.
Xiaoyuan HUANG ; Jianhong LONG ; Tinghong XIE ; Minghua ZHANG ; Pihong ZHANG ; Xinghua YANG ; Keqin ZHONG
Chinese Journal of Burns 2002;18(6):334-335
OBJECTIVETo evaluate the repairing methods of bulky tissue defect of forearm with flaps.
METHODSTwenty-one burned patients with wounds in the forearm were enrolled in this study. The injury causes were high-voltage electricity, hot press or crush injury. After local debridement, the forearm defects were repaired with pedicled complex flaps, latissimus dorsi musculocutaneous island flaps or large thoraco-abdominal flaps immediately.
RESULTSAll the flaps survived very well with satisfactory results except for 1 patient in whom local ischemic necrosis and sub-flap infection at the distal end of the flap occurred.
CONCLUSIONEarly debridement followed by skin flaps with pedicles or musculocutaneous flaps transfer could be simple, safe and reliable treatment strategies in the management of bulky tissue defects of the forearm due to burn, electric injury, or other devastating injuries.
Adolescent ; Adult ; Child ; Female ; Forearm Injuries ; surgery ; Humans ; Male ; Middle Aged ; Pectoralis Muscles ; transplantation ; Skin Transplantation ; methods ; Surgical Flaps ; Time Factors ; Wound Healing
7.Analysis of the clinical effect of vaginal ovarian cystectomy on ovarian reserve
Jing HUANG ; hui Ya LUO ; Nan WANG
Tianjin Medical Journal 2017;45(10):1057-1060
Objective To compare the clinical efficacy between the vaginal ovarian cystectomy and the laparoscopic ovarian cystectomy. Methods A total of 104 patients with ovarian cyst hospitalized in our hospital during June 2013-June 2016 were selected and divided into observation group (vaginal ovarian cystectomy, n=55) and control group (laparoscopic ovarian cystectomy, n=49). There were no significant differences in mean age, body mass index (BMI), abdominal surgical history, cyst diameter and cyst type between the two groups. The operation time, blood loss in operation, hospitalization expenses and average hospital stay were observed in the two groups. The ovarian reserve function before and after the operation was also observed. Results The operation time [(46.9±18.4 min)], hospitalization cost [(8165.3±951.8) yuan] and the average length of hospital stay (4.5 ± 1.9 days) were significantly less in the observation group than those of the control group [(62.3 ± 26.5) min], [(12543.9 ± 1464.4) yuan] and [(6.8 ± 2.3) days], (P<0.05). Before the operation, there were no significant differences in estradiol (E2), follicle stimulating hormone (FSH)/luteinizing (LH), FSH and antral follicle count (AFC) between the two groups. After the operation, the values of FSH/LH (1.4±0.4 vs. 1.8±0.6) and FSH [(9.2±2.9) U/L vs. (13.6±4.3) U/L] were significantly decreased in the observation group than those of the control group. The AFC (7.2±1.6 vs. 6.0±1.3) was significantly more in the observation group than that of the control group (P<0.05). Conclusion The vaginal ovarian cystectomy is of little damage to ovarian reserve function, which is suitable for women of child-bearing age and conforms to the requirement of"value medicine".
8.The effects of epidermal growth factor on the wound healing of deep partial thickness burn in rats.
Jun ZHENG ; Xiao-Yuan HUANG ; Xing WEI
Chinese Journal of Burns 2003;19(5):289-292
OBJECTIVETo observe the effects of recombinant human epidermal growth factor (rhEGF) on deep partial thickness burn wound healing.
METHODSThe rats were inflicted with deep partial thickness burn. The wounds were either treated with rhEGF, rhEGF with heparin or isotonic saline, respectively. Wound healing time was observed. Wound healing rate, water content and hydroxyproline (OHP) content and type I/III collagen ratio in the wound tissue were determined. Cellular DNA cycle analysis and histological examination were processed.
RESULTSAfter the application of rhEGF, burn wound healing time was shortened by two days and wound content of OHP was increased (P < 0.05), with decreased collagen type I/III ratio (P < 0.05). As a result, granulation was enhanced and cellular DNA replication was accelerated (P < 0.05). Heparin addition could augment the effects of rhEGF, especially on wound healing time (2 days shorter) and granulation.
CONCLUSIONThe wound healing time of the deep partial thickness burn could be accelerated markedly by topical application of rhEGF, but early application did not show obvious effects. The addition of heparin might further accelerate wound healing.
Animals ; Burns ; drug therapy ; pathology ; Epidermal Growth Factor ; pharmacology ; Epithelial Cells ; pathology ; Female ; Heparin ; pharmacology ; Humans ; Male ; Rats ; Rats, Sprague-Dawley ; Recombinant Proteins ; pharmacology ; Wound Healing ; drug effects
9.Application of isobaric tags labeling in proteomic research of human renal proximal tubular epithelial cells
yong-xi, CHEN ; ya, LI ; wen, ZHANG ; xiao-nong, CHEN ; wei-ming, WANG ; qun-ye, ZHANG ; qiu-hua, HUANG ; nan, CHEN
Journal of Shanghai Jiaotong University(Medical Science) 2006;0(05):-
0.05). Conclusion The labeling of iTRAQ in HK-2 cells is successful with favourable reproducibi-lity,which lays a foundation for the further research of proteomics in renal diseases.
10.Gentiopicroside,originated from Gentiana macrophylla Pall,possesses anti-arthritic efficacy in adjuvant-induced arthritis rats
Ya-Nan HUANG ; Lei-Ming ZHANG ; Yong-Ying LU ; Mei-Ling WANG ; Yan-Fei HAO ; Mao-Jing ZHU ; Feng-Hua FU
Chinese Journal of Pharmacology and Toxicology 2018;32(4):287-287
OBJECTIVE This work aimed to investigate the anti-rheumatoid arthritic effect of gentio-picroside from Gentiana macrophylla Pall using an animal model of adjuvant induced arthritis. METH-ODS Adjuvant arthritis was induced in fifty SD male rats,which were randomly divided into five groups (n=10):control(0.5% CMC-Na)group,AIA(rats with CFA)group,dexamethasone(1 mg·kg-1)group, gentiopicroside(50 mg·kg-1)group,and gentiopicroside(100 mg·kg-1)group.Rats were administered intragastrically with drugs or CMC-Na once a day for a period of 2 weeks.Paw swelling,arthritic index, histological changes were assessed to evaluate the anti-arthritic effect.Weight growth,spleen and thymus indexes were also investigated in.RESULTS Gentiopicroside at dose of 100 mg·kg-1significantly inhibited the secondary paw swelling(P<0.05)and arthritis index(P<0.05),decreased synovial inflammatory infil-tration, synovial hyperplasia and bone erosion. Furthermore, gentiopicroside showed no immunosup-pressive adverse effects in body weight, index of spleen and thyums compared with dexamethasone administration (P<0.05, P<0.01). CONCLUSION Gentiopicroside possessed anti-arthritic efficacy in AIA rats without immunosuppressive effects.