1.Modeling for prediction of arabinoxylans solubilization and endo-xylanase random attacking during mashing.
Chinese Journal of Biotechnology 2005;21(4):584-589
A model describing the solubilization of arabinoxylans and degradation by endo-xylanase random attacking during mashing was developed. The model was expected to predict the arabinoxylans concentration in wort at the settings of different initial value and mashing parameters for diminishing the negative effects of arabinoxylans on brewing. Results showed that the modeling errors range for the final concentration of arabinoxylans in wort was -9.5% to +13.6%. The model prediction accuracy for industrial scale mashing process was lower than that in laboratory scale. The errors were given 16.8% and 17.9%, respectively. The simulation results showed that arabinoxylans concentration was increased with the increase of mashing-in temperature, but it was decreased with prolonging the mashing-in time. The effect of initial arabinoxylans in malt on arabinoxylans concentration in wort was more remarkable than that of endo-xylanase activity in grist.
Endo-1,4-beta Xylanases
;
metabolism
;
Enzyme Activation
;
Fermentation
;
Models, Chemical
;
Solubility
;
Xylans
;
metabolism
2.Molecular docking of Bacillus pumilus xylanase and xylan substrate using computer modeling.
Jin-Xia LIN ; Liao-Yuan ZHANG ; Guang-Ya ZHANG ; Bai-Shan FANG
Chinese Journal of Biotechnology 2007;23(4):715-718
Bacillus pumilus xylanase was cloned and sequenced. Based on the tertiary structure that originated from homology modeling, the potential active pocket was searched and ligand-protein docking was performed using relative softwares. The information extracted from the molecular docking is analyzed; several amino acid residues might play a vital role in the xylanase catalytic reaction are obtained to instruct the further modification of xylanase directed-evolution.
Amino Acid Sequence
;
Bacillus
;
enzymology
;
genetics
;
Bacterial Proteins
;
genetics
;
metabolism
;
Base Sequence
;
Computer Simulation
;
Endo-1,4-beta Xylanases
;
genetics
;
metabolism
;
Models, Chemical
;
Models, Molecular
;
Molecular Sequence Data
;
Protein Binding
;
Substrate Specificity
;
Xylans
;
genetics
;
metabolism