1.CHISS software and applications in teaching of medical statistics
Xinyuan TONG ; Lei XIA ;
Chinese Journal of Clinical Pharmacology and Therapeutics 2000;0(02):-
The CHISS statistical software which has its own copyright protection in China is applied to the teaching in medical statistical. A questionnaire was carried out among 135 applicants after they had learnt the modern statistical method for 18 teaching hours and practiced on computers with CHISS for 6 teaching hours. Those applicants gave out the evaluations: CHISS has the character of convenient and visual demonstration. It can meet the needs of medical statistical teaching and doing research.
2.SAS statistics table of covariance analyses of clinical trial
Xinyuan TONG ; Gaokei ZHANG ; Chen YAO
Chinese Journal of Clinical Pharmacology and Therapeutics 2004;0(08):-
Four macro SAS instructions of covariance analysis are worked out, and a statistical table of covariance analysis is produced with the operation of macro SAS in this paper.
3.Comparison of DNA extraction methods from four Chinese traditional medical herbs
Xinyuan ZHANG ; Chaoyue ZHAO ; Hesheng HOU ; Shaoming TONG
Chinese Journal of Biochemical Pharmaceutics 2015;37(7):17-21
Objective To establish an optimum DNA extraction method for Chinese traditional medical herbs in order to meet necessary for DNA barcoding research.Methods Four Chinese traditional herbs, Glycyrrhiza uralensis Fisch, Phellodendron Chinensis Cortex, Cistanche tubulosa Wight and Cistanche deserticola Ma were chosen as the experimental materials, the DNA was extracted by 6 different kinds of DNA extraction method, including the improved method of high-salt combined low-pH,the improved method of SDS,CTAB method,PVP method,PlantZol Kit and Ezup Kit, the quality of DNA was investigated by ultraviolet spectrophotometry,agarose gel electrophoresis and PCR amplification by using specific primers of ITS2 and psbA-trnH. ResuIts The quality of the DNA was better than other four kinds of methods by the improved method of high-salt combined low-pH and Ezup Kit, the value of OD260/OD280 was between 1.7 ~1.9,the yield of DNA was the highest by the PlantZol kit , followed by the improved method of high-salt combined low-pH( P <0.05 ) , but the purity of DNA was poor by the PlantZol kit.The DNA electrophoresis tests showed that the DNA integrity of Glycyrrhiza uralensis Fisch and Cistanche tubulosa Wight were better with the improved method of high-salt combined low-pH, the improved SDS method, the CTAB method and the PlantZol kit.The DNA of Phellodendron Chinensis Cortex and Cistanche deserticola Ma were extracted by the six methods appeared diffuse status in the lanes.But only the improved method of high-salt combined low-pH could make the PCR amplification of the success rate 100% by using specific primers of ITS2 and trnH-psbA.ConcIusion The DNA extraction method of high-salt combined low-pH can be used to establish the Chinese DNA barcoding which has the advantages of lower cost, simpler procedure and less time.
4.Neutrophil-to-lymphocyte ratio predicts stroke-associated pneumonia
Xinyuan DING ; Xuanxia TONG ; Chuanqin FANG
International Journal of Cerebrovascular Diseases 2017;25(11):979-983
Objective To investigate the predictive value of peripheral blood neutrophil-to-lymphocyte ratio (NLR) for stroke-associated pneumonia (SAP) in patients with acute stroke.Methods Consecutive patients with acute stroke were enrolled.Their clinical data were collected.The peripheral blood white blood cells,neutrophil and lymphocyte counts were detected within 24 h after admission,and the NLR was calculated.Multivariate logistic regression analysis was used to determine the independent correlation between NLR and SAP.The receiver operating characteristic (ROC) curve was used to analyze the predictive value of NLR for SAP.Results A total of 126 patients with acute stroke were enrolled,including 45 females (35.7%) and 81 males (64.3%).Their mean age was 64.8 years.Fifty-two patients (41.3%) had intracerebral hemorrhage,and 74 (58.7%) had ischemic stroke.Thirty-nine patients (31.0%) occurred SAP,and 87 (69.0%) did not occur SAP.Univariate analysis showed that age,National Institutes of Health Stroke Scale scores,fasting glucose,total white blood cell count,neutrophil count,NLR,and proportions of patients with hyperlipidemia,ischemic heart disease,atrial fibrillation,smoking,dysphagia,using acid suppressing drugs and indwelling gastric tube in the SAP group were significantly higher than those in the non-SAP group (all P <0.05),and the high-density lipoprotein cholesterol level and lymphocyte count in the SAP group were significantly lower than those in the non-SAP group (all P < 0.05).Multivariate logistic regression analysis showed that NLR (odds ratio 2.079,95% confidence interval 1.174-3.194;P =0.001) was an independent risk factor for SAP after adjustment for confounding factors.ROC curve analysis showed that when the NLR cutoff value was 6.765,the sensitivity of predicting SAP was 64.1%,the specificity was 73.6%,and the area under ROC curve was 0.721 (95% confidence interval 0.630-0.813).Conclusions The elevated NLR in peripheral blood within 24 h after admission may has a certain predictive value for SAP in patients with acute stroke.
5.The application potential of a modified wireless intelligent capsule cystoscope for dynamic detection of porcine bladder mucosa
Weiyang HE ; Yingjie XU ; Hang TONG ; Jie LI ; Bangshu ZHAO ; Xinyuan LI ; Xin GOU ; Mingzhao XIAO
Chinese Journal of Urology 2023;44(1):52-55
Objective:To develop an improved wireless intelligent capsule cystoscope (WCE)for dynamic detection of bladder mucosa in a pig model.Methods:The WCE was introduced into a healthy experimental pig that under general anesthesia via urethra by applying an improved device. Multi-angle images of the bladder mucosa were then obtained by controlling the position of capsule cystoscope with an external magnetic field system. The shutter speed of the WCE was 2.5 fps and was automatically converted to 1.5 fps 30 minutes after initiation. The Vue software was utilized to download the shoot pictures which were former received by a computer via wireless transmission. The pig was roused and sent to the pigpen, without limitations in moving. The improved WCE was connected with a 2 cm thread. 12 hours later, the dilated sheath was inserted again, and the capsule was removed by a foreign body forceps under observation of a ureteroscopy.Results:The WCE was successfully placed and removed from the pig's bladder with the application of the improved devices. Over 20 thousand images that with 60K pixels of bladder mucosa were captured by the WCE at various angles within 12 hours, which revealed the process of urine filling and excreting in a time-dependent way. No notable adverse effects (bleeding, urinary tract injury, etc) were noted during the process of cystoscope placement, image acquisition, transmission, and removal.Conclusion:This study developed a novel WCE that could dynamically, intelligently and accurately monitor all aspects of the pig bladder mucosa, and has preferable application prospect.
6.Association of genetic variants of m6A binding protein with the risk of gastric cancer
Xinyuan LU ; Yanlu FENG ; Jie LI ; Siyi XU ; Chengyun LI ; Tong LIU ; Xinhua WANG ; Geyu LIANG
The Journal of Practical Medicine 2023;39(21):2834-2842
Objective To investigate the association between single nucleotide polymorphisms(SNPs)of YTHDF1 rs6011668,HNRNPA2B1 rs2070601 and rs76558212 with the risk of gastric cancer.Methods A total of 457 cases with gastric cancer and 525 healthy controls were collected.The candidate SNPs were genotyped using Hi-SNP genotyping methods by multiplex rounds of PCR and high-throughput sequencing;the association between the three SNPs with the risk of gastric cancer was analyzed by test and Logistic regression.Multifactorial logistic regression and Risk Score(RS)model was used to analyze the influence of environmental and genetic factors on the risk of gastric cancer.Results YTHDF1rs6011668 TT genotype carriers had 3.075 times higher risk of gastric cancer than CC genotype carriers(95%CI:1.128~8.382,P = 0.028),and 2.961 times higher risk than CC/TC genotypes carriers(95%CI:1.091~8.033,P = 0.033).Subgroups-analysis revealed that TT genotype mainly increased the risk of gastric cancer in non-tea drinkers,pickled food eaters and fried food eaters(P<0.05).In addition,TT genotype carriers had the increased risk of gastric cancer infiltration,lymph node metastasis,distal metastasis and intermediate to advanced stages(P<0.05).The RS of the case and control groups were calculated by combining environmental and genetic factors.The higher the RS score,the higher the risk of gastric cancer was found in the RS quartile groups.Compared with the RS
7.Fibroblast growth factor-2 inhibits vascular smooth muscle cell apoptosis and pro-motes its proliferation by suppressing the TET2/UQCRH expression
Ruiyan XU ; Wen LI ; Xinyuan LIU ; Tong YAO ; Shunlin QU ; Dangheng WEI ; Zuo WANG ; Zhisheng JIANG ; Guohua LI
Chinese Journal of Arteriosclerosis 2024;32(10):843-849
Aim To explore the role of the ten-eleven translocation 2(TET2)/ubiquinol-cytochrome C reductase hinge protein(UQCRH)axis in the inhibition of vascular smooth muscle cell(VSMC)apoptosis by fibroblast growth fac-tor-2(FGF-2).Methods Cultured VSMCs were divided into control group,FGF-2 group,and FGF-2+fibroblast growth factor receptor(FGFR)pan-inhibitor LY2874455 group.VSMCs overexpressing TET2(OETET2)or UQCRH(OEUQCRH)were divided into control group,FGF-2 group,and OETET2+FGF-2 or OEUQCRH+FGF-2 group.Ho-echst33342 and PI staining were used to detect cell apoptosis,CCK-8 assay was employed to measure cell proliferation,and Western blot was used to examine the expression levels of apoptosis-related proteins pro-Caspase-3,cleaved Caspase-3,Bax,Bcl-2,as well as TET2 and UQCRH.The NCBI and methprimer websites were utilized for predicting and analyzing CpG island sites in the UQCRH gene promoter.Results FGF-2 could inhibit VSMC apoptosis,promote proliferation,downregulate apoptosis-related proteins cleaved Caspase-3,Bax,TET2,and UQCRH expression,and upregulate anti-ap-optotic protein Bcl-2 expression(compared with control group,P<0.05).However,it did not affect pro-Caspase-3 ex-pression(compared with control group,P>0.05).LY2874455 could counteract the effects of FGF-2(compared with FGF-2 group,P<0.05).Overexpression of TET2 or UQCRH could reverse the anti-apoptotic and pro-proliferative effects of FGF-2 on VSMC,with upregulation of apoptosis-related protein expression and downregulation of anti-apoptotic protein expression(compared with FGF-2 group,P<0.05).The UQCRH gene promoter region contained three CpG islands.Overexpression of TET2 could upregulate UQCRH expression in VSMC treated with FGF-2(compared with FGF-2 group,P<0.05).Conclusion FGF-2,by inhibiting TET2 expression and UQCRH expression,reduces VSMC apoptosis and promotes its proliferation.