1. Establishment of a real-time PCR method to identify Ekpoma virus gene in blood sample of a returnee from Angola
Dong XIA ; Juan SONG ; Xiaonuan LUO ; Qinqin SONG ; Xinling WANG ; Guizhen WU ; Jun HAN
Chinese Journal of Experimental and Clinical Virology 2017;31(5):454-456
Objective:
To establish quantitative real-time PCR (qPCR) method based on Taqman probe for detecting Ekpoma virus (EKV).
Methods:
According to the conserved region of gene in EKV genome from GenBank, primers and probe for qPCR were designed. Validity and sensitivity were evaluated in this study. Both whole blood and serum of a returnee from Angola were tested by the established EKV-1 and EKV-2 qPCR method .
Results:
Sensitivity of EKV-1 and EKV-2 qPCR method was respectively 41 copies/μl and 70 copies/μl. Coefficient of variance (CV) was respectively 1.27%, 0.20%, 0.82%; 2.12%, 1.74%, and 1.40%. EKV-2 gene was detected in both whole blood and serum of a returnee from Angola.
Conclusions
The first EKV-2 gene was confirmed in both whole blood and serum of a returnee from Angola by real-time RT-PCR..
2. A autophagy induced by non-stuctural protein 2B of human rhinovirus
Juan SONG ; Xiaohui ZOU ; Xiaonuan LUO ; Qinqin SONG ; Bingtian SHI ; Dong XIA ; Mi LIU ; Zhiqiang XIA ; Zhuozhuang LU ; Jun HAN
Chinese Journal of Experimental and Clinical Virology 2019;33(1):21-24
Objective:
To study the intracellular location and autophagosome production of rhinovirus 16 2B protein using miniSOG labeling technique.
Methods:
2B was fused with miniSOG and flag tags to construct pcDNA3.1-2B-miniSOG-flag plasmid, which was used to transfect HEK293 cells, LC3 protein was detected by western blot. The transfected cells were fixed, stained with DAB through the photooxidation activity of miniSOG, and used to prepare ultrathin sections. Localization of 2B-miniSOG protein in cells and ultrastructural changes of cells were observed under electron microscope.
Results:
2B-miniSOG protein glows green under a fluorescence microscopy. Green flourescence coold be observed in the cells expressing 2B-miniSOG protein.LC-II protein increased in the cells transfected with pcDNA3.1-2B-miniSOG-flag. Under electron microscopy it was observed that 2B-miniSOG protein was located in the mitochondria, and a large number of vesicular structures appeared in the cytoplasm. Both autophagosomes and autophagic lysosomes can be observed.
Conclusions
Non-structural protein 2B of HRV16 can induce autophagy.
3. A preliminary study on thapsigargin promoting coxsackievirus B3 replication through activating transcription factor 6 pathway
Qinqin SONG ; Xiaonuan LUO ; Juan SONG ; Dong XIA ; Bingtian SHI ; Mi LIU ; Zhiqiang XIA ; Wenjun WANG ; Tianyu CAO ; Hengshun CHENG ; Jun HAN
Chinese Journal of Experimental and Clinical Virology 2019;33(3):244-247
Objective:
To investigate the effect of thapsigargin (TG) which can induce endoplasmic reticulum stress (ERS) on the replication of coxsackievirus B 3 (CV-B3).
Methods:
After 10 MOI CV-B3 infected HeLa cells were exposed 0.25 μmol/L TG for 3 h, 6 h and 9 h, virus RNA of HeLa cells were extracted and viral replication was evaluated by real time PCR. After 0.25 μmol/L、0.08 μmol/L and 0.025 μmol/L TG exposed, the plaque of CV-B3 was used to confirm further replication of CV-B3. To verify TG induced ERS through three signal pathway, one of among PERK, ATF6 and IRE1 inhibitors GSK2656157, AEBSF and STF-083010, and 0.25 μmol/L TG were used in HeLa cells infected with 10 MOI CV-B3, replication of CV-B3 was evaluated by qRT-PCR.
Results:
The stimulation of TG did not induce increase of virus replication after post-infection 3 h. However, TG induced replication of virus to increase 2.5 times after post-infection 6 h and 158.6 times after post-infection 9 h. And, the area of viral plaque was significantly increased. ATF6 inhibitors AEBSF significantly inhibited promotion of virus replication from TG.
Conclusions
TG can promote the replication of CV-B3 through ATF6 signal pathway.