1.Study of the metastasis-associated genes and its copy numbers variation in highly metastatic epithelial ovarian cancer
Lisha YING ; Shenhua XU ; Dan SU ; Hanzhou MOU ; Linhui GU ; Chihong ZHU ; Xianglin LIU
Chinese Journal of Obstetrics and Gynecology 2009;44(2):126-130
Objective To investigate the relationship of the metastasis-associated genes and its copy numbers variation in the highly metastatic human epithelial ovarian cancer cell line HO-8910PM. Methods The differentially expressed genes and its copy number variation between HO-8910PM cell line and normal ovarian tissues was detected by human genome UI33A 2.0 gene chip and human mapping 10K array 2.0 gene chip, and the data was analyzed by bioinformatics. Some of metastasis-associated genes were validated the results of single nucleotide polymorphism (SNP) and cDNA chips by fluorescence in situ hybridization (FISH) and real-time quantitative PCR. Results Integrate analysis of two gene chips data showed that there were 385 differentially expressed genes in the same and 379 SNP positional point (6 of them, included 2 genes) between HO-8910PM cell line and normal ovarian tissues, these copy number amplification of 379 SNP positional point of chromosome were ≥3, which had 240, deletion ≤ 1 had 139. Chromosome location analysis showed that there were 385 differentially expressed genes located at all chromosomes, and 261 of them ( 67.8%, 261/385 ) located at 10 chromosomes, included that 34 (8.8% ), 33 ( 8.6% ), 28 (7.3%), 27 (7.0%), 25 (6.5%), 24 (6.2%) of them located at chromosome 3, 2, 9, 10, 1 and 11 respectively, and 23 (6.0%) of them at chromosome 6 and 12 each, 22 (5.7%) of them at chromosome 4 and 5 each. For the function of differentially expressed genes, the results showed that 99 (25.7% ) genes belonged to the family of enzymes and their regulators, 54 ( 14.0% ) genes associated with signal transduction, 50 (13.0%) genes associated with nucleic acid binding, and 36 (9.4%) genes associated with protein binding. Conclusion We have demonstrated that there are 4 kinds of differentially expressed genes related to metastasis of ovarian cancer, which belonged to the families enzyme and its regulator, nucleic acid binding, signal transduction and protein binding, and located at chromosome 1, 2, 3, 4, 5, 6, 9, 10, 11 and 12.
2.Baseline drift of electrocardiograph dealt with mathematical morphology filter in real-time.
Xianglin ZHU ; Jianning YANG ; Ping TANG ; Xin LING
Journal of Biomedical Engineering 2010;27(1):48-52
We have done a research on mathematical morphology filter in order to eliminate baseline drift in the wave of electrocardiograph (ECG). Marago morphology filter type was chosen and flat structuring element filtering was found to be the best morphology filter modality for eliminating baseline drift, and the ratio of "signal numerical frequency to length of structuring element" determined the attenuation magnitude of the signal eliminated. We have come to the conclusion that the length of flat structuring element ought to be greater than or equal to the width of the signal component to be eliminated. The arithmetical algorithm was simulated with Matlab software, and was transplanted to DSP hardware platform. The result of experiment has shown that the arithmetic operation is simple and the method spends a short time (less than 1 ms) in eliminating the baseline drift of ECG effectively and instantly.
Algorithms
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Artifacts
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Electrocardiography
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instrumentation
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methods
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Equipment Design
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Humans
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Signal Processing, Computer-Assisted
3.New Polymorphic Microsatellite Loci Identified Using Genomic Resource for Schistosoma japonicum
Mingbo YIN ; Genfeng ZHU ; Xianglin ZHANG ; Bin XU ; Xiaojin MO ; Shengqiang SUN ; Shengyue WANG ; Blair DAVID ; Wei HU ; Zheng FENG
Chinese Journal of Parasitology and Parasitic Diseases 1987;0(02):-
Objective To identify new microsatellite loci from genome sequence database for the study of poly-morphicsm of Schistosoma japonicum. Methods Schistosoma japonicum isolates were obtained from seven endemic sites in China: Tongling and Guichi counties of Anhui Province, Duchang county of Jiangxi Province, Changde and Yueyang Cities of Hunan Province, Shashi City of Hubei Province, Xichang City of Sichuan Province. In order to study the genetic variance, genomic DNAs of 96 individual adult worms were screened against 17 new Schistosoma japonicum microsatellites and the raw data were analyzed by GenMapper 4.0. Furthermore, the varieties of alleles were inverstigated using GenAlEx 6 and genetic distances within a subpopulation (GenClone) and among populations(UPGMA, MEGA 3.1) were analyzed. Results High levels of polymorphism were found between and within population samples, and significant genetic diversity was observed among the seven subpopulations.Within Jiangxi population, most genetic distances (17 loci) among samples range from 25 to 32, indicating a significant genetic diversity. There are three clusters among the seven populations: Jiangxi, Tonglin, Shashi and Changde population, with the genetics distances ranging from 0.017 8 to 0.036 3; Guichi and Yueyang population belong to another cluster, with the genetic distance of 0.024 7; However, Xichang population is an unique group. Its genetic distances to other populations are notable with a range from 0.019 2 to 0.069 3. Conclusion The 17 new polymorphic microsatellites identified may be used as suitable markers for the study on population genetics of Schistosoma japonicum and the genetic variance of the worms seems to be complicated.
4.Expression of Nodal and its receptors in mouse tissues and organs at different ontogenetic stages
Ke WANG ; Min ZHU ; Hong GU ; Nianfeng LI ; Xianglin HU ; Fancai ZENG
Chongqing Medicine 2018;47(12):1575-1579
Objective To investigate the expression of Nodal and its receptors in different tissues and organs of different development stages of mice.Methods Ten pairs(male and female each for a pair) of mice were divided into the four groups:3 pairs served as adult mice group,the rest 7 pairs were allowed to mate,among them 3 pregnant mice served as the fetal group,and 3 pregnant mice served as the neonatal group and 1 pregnant mouse served as filial group.The multiple tissues and organs such as brain,liver,kidney,heart,lung were selected from fetal,neonatal,filial and adult mice for preparing the protein samples.Western blot was performed to detect the expression of Nodal and its type Ⅰ receptors of ALK7 and ALK4 as well as auxiliary receptor Cripto-1.Results Only cerebrum,cerebellum,liver and kidney had Nodal express in the four different mouse ontogenetic stages,in which only liver and kidney simultaneously expressed Nodal and its receptor protein in the whole four ontogenetic stages.Besides,most tissues and organs of adult mice expressed Nodal and its receptor protein,which was significantly different from the fetal,neonatal and filial mice.Conclusion Nodal signaling might have a certain effect on the growth and development of mouse liver and kidney during the late development stage.
5.Erratum to "Tanshinone IIA Protects Endothelial Cells from H2O2 -Induced Injuries via PXR Activation" Biomol Ther 25(6), 599-608 (2017)
Haiyan ZHU ; Zhiwu CHEN ; Zengchun MA ; Hongling TAN ; Chengrong XIAO ; Xianglin TANG ; Boli ZHANG ; Yuguang WANG ; Yue GAO
Biomolecules & Therapeutics 2024;32(2):261-261
6.Erratum to "Tanshinone IIA Protects Endothelial Cells from H2O2 -Induced Injuries via PXR Activation" Biomol Ther 25(6), 599-608 (2017)
Haiyan ZHU ; Zhiwu CHEN ; Zengchun MA ; Hongling TAN ; Chengrong XIAO ; Xianglin TANG ; Boli ZHANG ; Yuguang WANG ; Yue GAO
Biomolecules & Therapeutics 2024;32(2):261-261
7.Erratum to "Tanshinone IIA Protects Endothelial Cells from H2O2 -Induced Injuries via PXR Activation" Biomol Ther 25(6), 599-608 (2017)
Haiyan ZHU ; Zhiwu CHEN ; Zengchun MA ; Hongling TAN ; Chengrong XIAO ; Xianglin TANG ; Boli ZHANG ; Yuguang WANG ; Yue GAO
Biomolecules & Therapeutics 2024;32(2):261-261
8.Tanshinone IIA Protects Endothelial Cells from H₂O₂-Induced Injuries via PXR Activation.
Haiyan ZHU ; Zhiwu CHEN ; Zengchun MA ; Hongling TAN ; Chengrong XIAO ; Xianglin TANG ; Boli ZHANG ; Yuguang WANG ; Yue GAO
Biomolecules & Therapeutics 2017;25(6):599-608
Tanshinone IIA (Tan IIA) is a pharmacologically active substance extracted from the rhizome of Salvia miltiorrhiza Bunge (also known as the Chinese herb Danshen), and is widely used to treat atherosclerosis. The pregnane X receptor (PXR) is a nuclear receptor that is a key regulator of xenobiotic and endobiotic detoxification. Tan IIA is an efficacious PXR agonist that has a potential protective effect on endothelial injuries induced by xenobiotics and endobiotics via PXR activation. Previously numerous studies have demonstrated the possible effects of Tan IIA on human umbilical vein endothelial cells, but the further mechanism for its exerts the protective effect is not well established. To study the protective effects of Tan IIA against hydrogen peroxide (H₂O₂) in human umbilical vein endothelial cells (HUVECs), we pretreated cells with or without different concentrations of Tan IIA for 24 h, then exposed the cells to 400 μM H₂O₂ for another 3 h. Therefore, our data strongly suggests that Tan IIA may lead to increased regeneration of glutathione (GSH) from the glutathione disulfide (GSSG) produced during the GSH peroxidase-catalyzed decomposition of H₂O₂ in HUVECs, and the PXR plays a significant role in this process. Tan IIA may also exert protective effects against H₂O₂-induced apoptosis through the mitochondrial apoptosis pathway associated with the participation of PXR. Tan IIA protected HUVECs from inflammatory mediators triggered by H₂O₂ via PXR activation. In conclusion, Tan IIA protected HUVECs against H₂O₂-induced cell injury through PXR-dependent mechanisms.
Apoptosis
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Asian Continental Ancestry Group
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Atherosclerosis
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Endothelial Cells*
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Glutathione
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Glutathione Disulfide
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Human Umbilical Vein Endothelial Cells
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Humans
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Hydrogen Peroxide
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Inflammation
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Oxidative Stress
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Regeneration
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Rhizome
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Salvia miltiorrhiza
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Triacetoneamine-N-Oxyl
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Xenobiotics
9.Gene expression profile differences in high and low metastatic human ovarian cancer cell lines by gene chip.
Shenhua XU ; Hanzhou MOU ; Guiquan LÜ ; Chihong ZHU ; Zhengyan YANG ; Yongliang GAO ; Hongkun LOU ; Xianglin LIU ; Yong CHENG ; Wen YANG
Chinese Medical Journal 2002;115(1):36-41
OBJECTIVESTo study the difference between gene expressions of high (H0-8910PM) and low (HO-8910) metastatic human ovarian carcinoma cell lines and screen novel associated genes by cDNA microarray.
METHODScDNA retro-transcribed from equal quantities of mRNA derived from high and low metastatic tumor cells or normal ovarian tissues were labeled with Cy5 and Cy3 fluorescein as probes. The mixed probe was hybridized with two pieces of BioDoor 4096 double dot human whole gene chip and scanned with a ScanArray 3000 laser scanner. The acquired image was analyzed by ImaGene 3.0 software.
RESULTSA total of 355 genes with expression levels more than 3 times larger were found by comparing the HO-8910 cell with normal ovarian epithelial cells. A total of 323 genes with expression levels more than 3 times larger in HO-8910PM cells compared to normal ovarian epithelium cells were also detected. A total of 165 genes whose expression levels were more than two times those of HO-8910PM cells compared to their mother cell line (HO-8910) were detected. Twenty-one genes with expression levels > 3 times were found from comparison of these two tumor cell lines.
CONCLUSIONScDNA microarray techniques are effective in screening differential gene expression between two human ovarian cancer cell lines (H0-8910PM; HO-8910) and normal ovarian epithelial cells. These genes may be related to the genesis and development of ovarian carcinoma. Analysis of the human ovarian cancer gene expression profile with cDNA microarray may help in gene diagnosis, treatment and prevention.
Female ; Gene Expression Profiling ; Humans ; Neoplasm Metastasis ; Oligonucleotide Array Sequence Analysis ; Ovarian Neoplasms ; genetics ; pathology ; Tumor Cells, Cultured
10.Evaluation of a China-made disposable peroral cholangioscope in an animal experiment
Li DONG ; Fan WANG ; Yue ZHU ; Pengcheng YANG ; Xianglin LI ; Haihang NIE ; Jun FANG ; Hongling WANG ; Qiu ZHAO
Chinese Journal of Digestive Endoscopy 2022;39(3):220-224
Objective:To evaluate the efficacy and safety of a China-made disposable peroral cholangioscope in animal cholangioscopy.Methods:Six healthy Bama minipigs underwent the domestic disposable peroral cholangioscopy after anesthesia. The operation performance and image quality of the products were evaluated, and intraoperative and postoperative complications were recorded.Results:All 6 animals received the domestic disposable peroral cholangioscopy. The cholangioscope showed good operating performance and could smoothly enter the biliary tract through the duodenoscope. The water injection, suction and instrument channels were unobstructed. The cholangioscopic image was clear, the color resolution was good, and there was no image distortion. The lumen and the mucosal surface could be accurately assessed. During the examination, there was no operative injuries such as bleeding, perforation, or adverse events such as respiratory depression or cardiac arrest. All pigs survived the operation with no adverse reaction.Conclusion:The China-made disposable peroral cholangioscope is safe, with good operability and high-quality image.