1.MicroRNA Target Prediction Based on Support Vector Machine Ensemble Classification Algorithm of Under-sampling Technique.
Journal of Biomedical Engineering 2016;33(1):72-77
Considering the low accuracy of prediction in the positive samples and poor overall classification effects caused by unbalanced sample data of MicroRNA (miRNA) target, we proposes a support vector machine (SVM)-integration of under-sampling and weight (IUSM) algorithm in this paper, an under-sampling based on the ensemble learning algorithm. The algorithm adopts SVM as learning algorithm and AdaBoost as integration framework, and embeds clustering-based under-sampling into the iterative process, aiming at reducing the degree of unbalanced distribution of positive and negative samples. Meanwhile, in the process of adaptive weight adjustment of the samples, the SVM-IUSM algorithm eliminates the abnormal ones in negative samples with robust sample weights smoothing mechanism so as to avoid over-learning. Finally, the prediction of miRNA target integrated classifier is achieved with the combination of multiple weak classifiers through the voting mechanism. The experiment revealed that the SVM-IUSW, compared with other algorithms on unbalanced dataset collection, could not only improve the accuracy of positive targets and the overall effect of classification, but also enhance the generalization ability of miRNA target classifier.
Algorithms
;
MicroRNAs
;
chemistry
;
Support Vector Machine
2.Feature extraction for breast cancer data based on geometric algebra theory and feature selection using differential evolution.
Journal of Biomedical Engineering 2014;31(6):1218-1228
The feature extraction and feature selection are the important issues in pattern recognition. Based on the geometric algebra representation of vector, a new feature extraction method using blade coefficient of geometric algebra was proposed in this study. At the same time, an improved differential evolution (DE) feature selection method was proposed to solve the elevated high dimension issue. The simple linear discriminant analysis was used as the classifier. The result of the 10-fold cross-validation (10 CV) classification of public breast cancer biomedical dataset was more than 96% and proved superior to that of the original features and traditional feature extraction method.
Algorithms
;
Artificial Intelligence
;
Breast Neoplasms
;
classification
;
diagnosis
;
Discriminant Analysis
;
Female
;
Humans
3.Mechanisms of electroacupuncture analgesia and pain-reliever
Chinese Medical Equipment Journal 2003;0(10):-
Purpose:To summarize the base of electroacupuncture analgesia theory and the development of pain-reliever at present.Methods:By consulting a great deal of literatures,the mechanism of electroacupuncture analgesia is summarized from nerve,body fluid to molecule.The merits,kinds,using methods and notices of electroacupuncture are briefly introduced.Present research of Electroacuncture analgesia and its prospects based on traditional Chinese medical theory and modern science and technology are also summed up.Conclusion:This paper provides the basic theory for studying and developing the new style pain-relievers.
4.Research on the methods for inter-class distinctive feature selection for leucocyte recognition based on attribute hierarchical relationship.
Lianwang HAO ; Wenxue HONG ; Ting LI
Journal of Biomedical Engineering 2014;31(6):1202-1206
To increase efficiency of automated leucocyte pattern recognition using lower feature dimensions, a novel inter-class distinctive feature selection method for chromatic leucocyte images was proposed based on attribute hierarchical relationship. According to the attribute constraints in formal concept analysis, we established a knowledge representation and discovery method based on the hierarchical optimal diagram by defining attribute value and visual representation of optimized hierarchical relationship. It was applied to human peripheral blood leucocytes classification and 12 distinctive attributes were simplified from 60 inter-class attributes, which contributes significantly to reduced feature dimensions and efficient inter-class feature classification. Compared with the classical experimental data, the inter-class distinctive feature selection method based on hierarchical optimal diagram was proved to be usable and effective for six leucocyte pattern recognition.
Humans
;
Leukocytes
;
classification
;
Pattern Recognition, Automated
5.Application of semi-supervised sparse representation classifier based on help training in EEG classification.
Min JIA ; Jinjia WANG ; Jing LI ; Wenxue HONG
Journal of Biomedical Engineering 2014;31(1):1-6
Electroencephalogram (EEG) classification for brain-computer interface (BCI) is a new way of realizing human-computer interreaction. In this paper the application of semi-supervised sparse representation classifier algorithms based on help training to EEG classification for BCI is reported. Firstly, the correlation information of the unlabeled data is obtained by sparse representation classifier and some data with high correlation selected. Secondly, the boundary information of the selected data is produced by discriminative classifier, which is the Fisher linear classifier. The final unlabeled data with high confidence are selected by a criterion containing the information of distance and direction. We applied this novel method to the three benchmark datasets, which were BCI I, BCI II_IV and USPS. The classification rate were 97%, 82% and 84.7%, respectively. Moreover the fastest arithmetic rate was just about 0. 2 s. The classification rate and efficiency results of the novel method are both better than those of S3VM and SVM, proving that the proposed method is effective.
Algorithms
;
Brain-Computer Interfaces
;
Electroencephalography
;
classification
;
Humans
6.Automatic Classification of Epileptic Electroencephalogram Signal Based on Improved Multivariate Multiscale Entropy.
Yonghong XU ; Jie CUI ; Wenxue HONG ; Huijuan LIANG
Journal of Biomedical Engineering 2015;32(2):256-262
Traditional sample entropy fails to quantify inherent long-range dependencies among real data. Multiscale sample entropy (MSE) can detect intrinsic correlations in data, but it is usually used in univariate data. To generalize this method for multichannel data, we introduced multivariate multiscale entropy into multiscale signals as a reflection of the nonlinear dynamic correlation. But traditional multivariate multiscale entropy has a large quantity of computation and costs a large period of time and space for more channel system, so that it can not reflect the correlation between variables timely and accurately. In this paper, therefore, an improved multivariate multiscale entropy embeds on all variables at the same time, instead of embedding on a single variable as in the traditional methods, to solve the memory overflow while the number of channels rise, and it is more suitable for the actual multivariate signal analysis. The method was tested in simulation data and Bonn epilepsy dataset. The simulation results showed that the proposed method had a good performance to distinguish correlation data. Bonn epilepsy dataset experiment also showed that the method had a better classification accuracy among the five data set, especially with an accuracy of 100% for data collection of Z and S.
Algorithms
;
Electroencephalography
;
Entropy
;
Epilepsy
;
diagnosis
;
Humans
;
Multivariate Analysis
;
Nonlinear Dynamics
7.Feature Extraction of Chinese Materia Medica Fingerprint Based on Star Plot Representation of Multivariate Data
Jianxin CUI ; Wenxue HONG ; Rongjuan ZHOU ; Haibo GAO
Chinese Herbal Medicines 2011;03(2):140-143
Objective To study a novel feature extraction method of Chinese materia medica (CMM) fingerprint. Methods On the basis of the radar graphical presentation theory of multivariate, the radar map was used to figure the non-map parameters of the CMM fingerprint, then to extract the map features and to propose the feature fusion. Results Better performance was achieved when using this method to test data. Conclusion This shows that the feature extraction based on radar chart presentation can mine the valuable features that facilitate the identification of Chinese medicine.
8.Research and prospect on modern moxibustion instrument
Wenxue HONG ; Jianhong CAI ; Jun JING ; Chengwei LI
Chinese Medical Equipment Journal 1989;0(03):-
Based on the histories of moxibustion and moxibustion apparatus, this paper studies two basic patterns and the problem of categorizing about moxibustion instrument, and summarizes and experimentalizes its mechanism. Its developing way is brought up.
9.Extraction method of the visual graphical feature from biomedical data.
Jing LI ; Jinjia WANG ; Wenxue HONG
Journal of Biomedical Engineering 2011;28(5):916-921
The vector space transformations such as principal component analysis (PCA), linear discriminant analysis (LDA), independent component analysis (ICA) or the kernel-based methods may be applied on the extracted feature from the field, which could improve the classification performance. A barycentre graphical feature extraction method of the star plot was proposed in the present study based on the graphical representation of multi-dimensional data. The feature order question of the graphical representation methods affecting the star plot was investigated and the feature order method was proposed based on the improved genetic algorithm (GA). For some biomedical datasets, such as breast cancer and diabetes, the obtained classification error of barycentre graphical feature of star plot in the GA based optimal feature order is very promising compared to the previously reported classification methods, and is superior to that of traditional feature extraction method.
Algorithms
;
Artificial Intelligence
;
Biomedical Research
;
Computer Graphics
;
Data Collection
;
Discriminant Analysis
;
Linear Models
;
Pattern Recognition, Automated
;
methods
;
Principal Component Analysis
10.Study on noninvasive measurement of blood glucose based on optical rotation.
Hailong JIN ; Qin GE ; Wenxue HONG
Journal of Biomedical Engineering 2009;26(6):1391-1394
With the development of economy, the incidence of diabetes is keeping on rising. It has been a larger chief offender endangering human health. Glucose monitoring in time, accurately and continuously can provide the basis for the adjustment of diet, exercise and drug treatment project, and can control disease at the level of satisfaction degree. Noninvasive measurement of glucose avoids blood collection with high frequency, alleviates pain caused by blood sampling, and prevents infection. It comes with hope for the diabetic. In this article, we compare the kinds of techniques, introduce the theory, the problems of polarization rotation, the solving methods and the advantages, thus providing references for the noninvasive measurement of glucose.
Blood Glucose
;
analysis
;
Blood Glucose Self-Monitoring
;
methods
;
trends
;
Diabetes Mellitus
;
blood
;
Humans
;
Optical Rotation