1.Genetic diversity and genetic structures of original plants of Viticis Fructus:an SSR markers-based analysis.
Yi-Qi SUN ; Lu-Ying ZHAO ; Bo ZHU ; Min JIA ; Qiao-Yan ZHANG ; Lu-Ping QIN
China Journal of Chinese Materia Medica 2021;46(15):3824-3831
The present study aimed to provide the protection strategies for wild germplasm resources of original plants of Viticis Fructus and a theoretical basis for the sustainable use of Viticis Fructus. The genetic diversity and genetic structures of the 232 indivi-duals in 19 populations of Vitex rotundifolia and V. trifolia were analyzed by eight SSR markers with tools such as Popgene32, GenAlex 6.502, and STRUCTURE. Bottleneck effect was detected for the population with more than 10 individuals. The results indicated that 42 and 26 alleles were detected from the populations of V. rotundifolia and V. trifolia, respectively, with average expected heterozygo-sities of 0.448 6 and 0.583 9, which are indicative of low genetic diversity. AMOVA revealed the obvious genetic variation of V. rotundifolia and V. trifolia within population(84.43%, P<0.01; 60.37%, P<0.01). Furthermore, in eight SSR loci, six from V. rotundifolia populations and two from V. trifolia populations failed to meet Hardy-Weinberg equilibrium expectations(P<0.05), which confirmed that the populations experienced bottleneck effect. As assessed by Mantel test, geographical distance posed slight impacts on the genetic variation between the populations of V. rotundifolia and V. trifolia. Principal component analysis(PCA) and STRUCTURE analysis demonstrated evident introgression of genes among various populations. The original plants of Viticis Fructus were confirmed low in genetic diversity and genetic differentiation level. Therefore, the protection of wild resources of original plants of Viticis Fructus should be strengthened to ensure its sustainable use.
Alleles
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Fruit/genetics*
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Genetic Variation
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Geography
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Microsatellite Repeats
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Vitex/genetics*
2.Genetic diversity analysis of Vitex trifolia var. simplicifolia populations with inter-simple sequence repeats (ISSR) technique.
Ronghua LIU ; Xuejing ZHAN ; Luqi HUANG ; Meilan CHEN ; Huilian HUANG ; Zhilin MA ; Feng SHAO
China Journal of Chinese Materia Medica 2010;35(13):1670-1673
OBJECTIVETo investigate 4 populations of 80 samples of Vitex trifolia var. simplicifolia collected from Shandong and Jiangxi province and analyze their intraspecies genetic variance.
METHODInter-simple sequence repeat (ISSR) technique was applied for the study.
RESULTFifteen specific and stable primers were selected from 100 primers. A total of 129 sites were generated, and 115 of them (89.15%) were polymorphic. The data analyzed by PopGene demonstrated that the average polymorphic site percentage among the four populations was 71.89%. The average Shannon's information index was 0. 220 4. According to cluster analysis and the law of geographic variation, the populations were classified into two large groups: the Shandong group and the Jiangxi group.
CONCLUSIONThese results will provide the information for protection and utilization of V. trifolia var. simplicifolia and also further data for the study of genetic variation and species differentiation of V. trifolia var. simplicifolia.
China ; Genetic Variation ; Microsatellite Repeats ; Polymorphism, Genetic ; Vitex ; classification ; genetics