1.A Method for Fluorescent Diffuse Optical Tomography Based on Lattice Boltzmann Forward Model on GPU Parallelization.
Huandi WU ; Zhuangzhi YAN ; Xingxing CEN
Chinese Journal of Medical Instrumentation 2020;44(2):95-100
Fluorescent Diffuse Optical Tomography (FDOT) is an emerging imaging method with great prospects in fields of biology and medicine. However, the current solutions to the forward problem in FDOT are time consuming, which greatly limit the application. We proposed a method for FDOT based on Lattice Boltzmann forward model on GPU to greatly improve the computational efficiency. The Lattice Boltzmann Method (LBM) was used to construct the optical transmission model. This method separated the LBM into collision, streaming and boundary processing processes on GPUs to perform the LBM efficiently, which were local computational and inefficient on CPU. The feasibility of the proposed method was verified by the numerical phantom and the physical phantom experiments. The experimental results showed that the proposed method achieved the best performance of a 118-fold speed up under the precondition of simulation accuracy, comparing to the diffusion equation implemented by Finite Element Method (FEM) on CPU. Thus, the LBM on the GPU may efficiently solve the forward problem in FDOT.
Computers
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Fluorescence
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Phantoms, Imaging
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Tomography, Optical/methods*
3.Non-invasive detection of the boundary of early breast tumor using DSF-DOT.
Weipan CUI ; Hang ZHANG ; Bin LUO ; Jiangfeng XU
Journal of Biomedical Engineering 2004;21(6):1014-1018
Traditional biomedical imaging technology has a difficulty in detecting the boundary of a breast tumor at its early stage since the difference in the sound resistance or density between the early breast tumor and normal tissue is small. In this paper, the boundary of an early breast tumor is detected successfully by using a new method called DSF-DOT (delta sound field diffusion optical tomography), which is based on a sound field and the light diffusion theory. At the same time, the influence of the size of the acting area of the sound field on the reconstruction of the tumor boundary is investigated in details. The work is useful for further research on the diagnosis of early breast cancers.
Breast Neoplasms
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diagnosis
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Female
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Humans
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Pregnancy
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Tomography, Optical
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methods
4.Evaluating the optic nerve and retinal nerve fibre layer: the roles of Heidelberg retina tomography, scanning laser polarimetry and optical coherence tomography.
Annals of the Academy of Medicine, Singapore 2007;36(3):194-202
INTRODUCTIONFor many years, ophthalmologists have looked at the optic nerve head to evaluate the status of glaucoma. Clinical examination of the optic nerve head and retinal nerve fibre layer (RNFL) is however, subjective and sometimes variable. Recent developments in computer-based imaging technologies have provided a means of obtaining quantitative measurements of the optic nerve head topography and peripapillary retinal nerve fibre layer thickness.
METHODSMultiple searches using Medline were carried out. Additional searches were made using reference lists of published papers and book chapters.
RESULTSStudies involving three imaging technologies namely, confocal scanning laser ophthalmoscopy, scanning laser polarimetry and optical coherence tomography were reviewed. Overall, these technologies were reproducible and demonstrate good sensitivity and specificity in the range of 70 to 80%. Inclusion of age and ethnicity normative database will make these technologies more effective in screening and diagnosis. Quantitative measurements provide useful parameters for monitoring of patients.
CONCLUSIONThere is no consensus on the best technology for assessing structural damage in glaucomatous optic neuropathy. Therefore, as with any investigation, the clinician should exercise clinical correlation and judgment before instituting the appropriate treatment.
Female ; Humans ; Middle Aged ; Ophthalmoscopy ; methods ; Optic Nerve ; Retina ; Sensitivity and Specificity ; Tomography, Optical ; methods ; Tomography, Optical Coherence
5.3D reconstruction based on sub-pixel points of structured light.
Chinese Journal of Medical Instrumentation 2009;33(5):336-338
In this paper, a method for detecting sub-pixel points based on zero-crossing detection combined with Steger's curvilinear detector has been presented. Finally, the feasibility and validity of this method has been confirmed by the experiment.
Image Processing, Computer-Assisted
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methods
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Imaging, Three-Dimensional
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methods
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Tomography, Optical
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methods
6.A segmentation algorithm of OCT image for macula edema.
Ping YANG ; Qing PENG ; Weiping LIN ; Xin YANG
Journal of Biomedical Engineering 2011;28(5):1001-1006
According to the characteristics of OCT images for macula edema, we studied a method for segmentation of the macula edema. Based on the Chan-Vese model, we proposed an improved level-set algorithm. With defining the integer-valued signed function directly, the curve could evolute outward or inward by changing the inside neighboring rid points and outside neighboring grid points into each other. We realized image segmentation which is much faster than the method of Chan-Vese model and smoothness regularization. We segmented 45 images and extracted the macula edema of each image. After achieving good segmentation results, we estimated the volume of the macular edema. The method provides quantitative analytic tools for clinical diagnosis and therapy.
Algorithms
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Humans
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Image Interpretation, Computer-Assisted
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methods
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Macular Edema
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diagnosis
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pathology
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Tomography, Optical Coherence
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methods
7.Application of improved PCNN algorithm in retinal macular edema segmentation.
Zhinan XIE ; Min GU ; Yixiao WU ; Dong ZHENG
Chinese Journal of Medical Instrumentation 2012;36(6):411-414
In order to extract the outlines of macular edema from OCT images of macular, and estimate the volume of edema, we have to accurately segment the macular edema region. In this paper, an improved PCNN algorithm was proposed to conduct the above process. Combined with the adaptive base threshold, and the simplified neural network parameters, a binary image of macular edema was produced. According to the principle of maximum image entropy, the optimal number of iterations was determined as 8, which was evaluated by its misclassification rate. Simulation showed that the proposed algorithm could extract the macular edema region rapidly and accurately, providing the basis for further OCT image analysis.
Algorithms
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Fluorescein Angiography
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methods
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Humans
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Macular Edema
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diagnostic imaging
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Radiography
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Tomography, Optical Coherence
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methods
8.Comparative study of optic disc measurement by Copernicus optical coherence tomography and Heidelberg retinal tomography.
Qing-Song YANG ; Ya-Jie YU ; Shu-Ning LI ; Juan LIU ; Ying-Juan HAO
Chinese Medical Journal 2012;125(16):2858-2861
BACKGROUNDCopernicus optical coherence tomography (SOCT) is a new, ultra high-speed and high-resolution instrument available for clinical evaluation of optic nerve. The purpose of the study was to compare the agreements between SOCT and Heidelberg retinal tomography (HRT).
METHODSA total of 44 healthy normal volunteers were recruited in this study. One eye in each subject was selected randomly. Agreement between SOCT and HRT-3 in measuring optic disc area was assessed using Bland-Altman plots. Relationships between measurements of optic nerve head parameter obtained by SOCT and HRT-3 were assessed by Pearson correlation.
RESULTSThere was no significant difference in the average cup area (0.306 vs. 0.355 mm, P = 0.766), cup volume (0.158 vs. 0.130 mm, P = 0.106) and cup/disc ration (0.394 vs. 0.349 mm, P = 0.576) measured by the two instruments. However, other optic disc parameters from SOCT were significantly lower compared with HRT-3. The Bland-Altman plot revealed good agreement of cup area and cup volume measured by SOCT and HRT-3. Bad agreement of disc area, rim area, rim volume and cup/disc ratio were found between SOCT and HRT-3. The highest correlations between the two instruments were observed for cup area (r(2) = 0.783, P = 0.000) and cup/disc ratio (r(2) = 0.669, P = 0.000), whereas the lowest correlation was observed for disc area (r(2) = 0.100, P = 0.037), rim area (r(2) = 0.275, P = 0.000), cup volume (r(2) = 0.005, P = 0.391) and rim volume (r(2) = 0.021, P = 0.346).
CONCLUSIONSThere were poor agreements between SOCT and HRT-3 for measurement of optic nerve parameters except cup area and cup volume. Measurement results of the two instruments are not interchangeable.
Adolescent ; Adult ; Female ; Humans ; Male ; Middle Aged ; Optic Disk ; pathology ; Retina ; pathology ; Tomography ; methods ; Tomography, Optical Coherence ; methods ; Young Adult
9.Efficacy of Strip Meniscometry for Dry Eye Syndrome Diagnosis.
Moon Kyoung KIM ; Yong Woo JI ; Hyung Keun LEE ; Kyoung Yul SEO ; Eung Kweon KIM ; Tae Im KIM
Journal of the Korean Ophthalmological Society 2016;57(10):1521-1526
PURPOSE: To evaluate the efficacy of strip meniscometry test for dye eye syndrome (DES) by measuring the correlation between strip meniscometry and conventional test measurements. METHODS: All subjects were examined using the Schirmer test, tear breakup time (TBUT) and strip meniscometry using SMTube (Echo Electricity Co., Ltd., Fukushima, Japan). Tear meniscus height (TMH), tear meniscus depth (TMD) and tear meniscus area (TMA) were measured using Fourier-domain optical coherence tomography. The DES group (n = 46 eyes) was compared with the normal group (n = 30 eyes) and correlation was assessed using Spearman's correlation coefficient. RESULTS: Strip meniscometry measurement was significantly correlated with Schirmer score (r = 0.6080, p < 0.01), TBUT (r = 0.5980, p < 0.01), TMH (r = 0.6210, p < 0.01), TMD (r = 0.6080, p < 0.01) and TMA (r = 0.6370, p < 0.01). Strip meniscometry was significantly lower in the DES group (4.58 ± 1.94 mm) than the normal group (7.07 ± 2.61 mm, p < 0.05). CONCLUSIONS: Strip meniscometry was significantly correlated with other conventional test measurements for dry eye syndrome. Strip meniscometry is less time consuming and a less invasive method than the Schirmer test. Strip meniscometry could be an efficient tool to evaluate patients with dry eye syndrome in a clinical setting.
Diagnosis*
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Dry Eye Syndromes*
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Electricity
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Humans
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Methods
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Tears
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Tomography, Optical Coherence
10.Erratum: Optical Coherence Tomography for the Diagnosis and Evaluation of Human Otitis Media.
Nam Hyun CHO ; Sang Heun LEE ; Woonggyu JUNG ; Jeong Hun JANG ; Stephen A BOPPART ; Jeehyun KIM
Journal of Korean Medical Science 2015;30(6):834-834
We made two mistakes in our recently published article. We are correcting the authorship and funding information.
Ear, Middle/*pathology
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Humans
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Otitis Media/*pathology
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Reproducibility of Results
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Sensitivity and Specificity
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Tomography, Optical Coherence/*methods