1.LVTree Viewer:An Interactive Display for the All-Species Living Tree Incorporating Automatic Comparison with Prokaryotic Systematics
Zuo GUANGHONG ; Zhi XIAOYANG ; Xu ZHAO ; Hao BAILIN
Genomics, Proteomics & Bioinformatics 2016;14(2):94-102
We describe an interactive viewer for the All-Species Living Tree (LVTree). The viewer incorporates treeing and lineage information from the ARB-SILVA website. It allows collapsing the tree branches at different taxonomic ranks and expanding the collapsed branches as well, keeping the overall topology of the tree unchanged. It also enables the user to observe the consequence of trial lineage modifications by re-collapsing the tree. The system reports taxon statistics at all ranks automatically after each collapsing and re-collapsing. These features greatly facilitate the compar-ison of the 16S rRNA sequence phylogeny with prokaryotic taxonomy in a taxon by taxon manner. In view of the fact that the present prokaryotic systematics is largely based on 16S rRNA sequence analysis, the current viewer may help reveal discrepancies between phylogeny and taxonomy. As an application, we show that in the latest release of LVTree, based on 11,939 rRNA sequences, as few as 24 lineage modifications are enough to bring all but two phyla (Proteobacteria and Firmicutes) to monophyletic clusters.
2.Structural confirmation of sulconazole sulfoxide as the primary degradation product of sulconazole nitrate
Qun XU ; Khan ASHRAF ; Di GAO ; Adams M. KRISTIE ; Tadjimukhamedov FATKHULLA ; Shane TAN ; Simpson T. JOHN
Journal of Pharmaceutical Analysis 2018;8(2):96-102
Sulconazole has been reported to degrade into sulconazole sulfoxide via sulfur oxidation; however, structural characterization data was lacking and the potential formation of an N-oxide or sulfone could not be excluded. To clarify the degradation pathways and incorporate the impurity profile of sulconazole into the United States Pharmacopeia–National Formulary (USP–NF) monographs, a multifaceted approach was utilized to confirm the identity of the degradant. The approach combines stress testing of sulco-nazole nitrate, chemical synthesis of the degradant via a hydrogen peroxide-mediated oxidation reaction, semi-preparative HPLC purification, and structural elucidation by LC―MS/MS and NMR spectroscopy. Structural determination was primarily based on the comparison of spectroscopic data of sulconazole and the oxidative degradant. The mass spectrometric data have revealed a McLafferty-type rearrange-ment as the characteristic fragmentation pathway for alkyl sulfoxides with aβ-hydrogen atom, and was used to distinguish the sulfoxide from N-oxide or sulfone derivatives. Moreover, the generated sulco-nazole sulfoxide was utilized as reference material for compendial procedure development and valida-tion, which provides support for USP monograph modernization.
3.Cultivation of prescription-auditing pharmacists’ability in prescription pre-audit and case analysis
Li WANG ; Yue MA ; Ping XU ; Mili SHI ; Chunsong YANG
China Pharmacy 2022;33(15):1893-1897
OBJECTIVE To summariz e the expe rience of the ability training of prescription-auditing pharmacists in prescription pre-audit,and introduce the typical cases of the prescription-auditing pharmacists participating in the drug intervention. METHODS From October ,2020 to October ,2021,under the audit mode of “prescription pre-audit system+prescription-auditing pharmacists ” adopted by Yuxi People ’s Hospital (hereinafter referred to as “the hospital ”),the abilities of prescription-auditing pharmacists were cultivated from the aspects of training in pharmaceutical related professional knowledge ,training in the use of Chinese and English medical retrieval tools ,databases and websites ,and clinical thinking and communication ability ;through the construction of ability evaluation form of prescription-auditing pharmacists ,their abilities were assessed. RESULTS & CONCLUSIONS After one year ’s ability training ,the rational rate of prescription (doctor’s order ),the proportion of doctors ’active revision of problem prescription (doctor’s order )and the doctor ’s acceptance rate of intervention by prescription-auditing pharmacists showed an upward trend ,the average time of irrational prescription (doctor’s order )by prescription-auditing pharmacists showed a shortening trend ,and the intervention rate of prescription (doctor’s order )showed a downward trend. In addition to the publication of papers (belonging to the bonus item ),the average score of the ability evaluation form of prescription-auditing pharmacists had significantly increased , from 45.2 in October 2020 to 97.6 in October 2021.
4.Major workplace related accidents in Singapore: A major trauma centre's experience.
Zhi Xu NG ; Li Tserng TEO ; Karen T S GO ; Yen Teng YEO ; Ming Terk CHIU
Annals of the Academy of Medicine, Singapore 2010;39(12):920-927
INTRODUCTIONMajor workplace related accidents pose a significant healthcare resource challenge in Singapore.
MATERIALS AND METHODSOur study looks at the epidemiology of patients who were admitted for workplace related accidents, in a single institution, with an Injury Severity Score of >9.
RESULTSThere were 196 cases of major workplace related accidents admitted between January 2006 and December 2007. The median age of patients admitted was 37 years with a large percentage being males (95.4%) and non-residents (57.1%). The most common ethnic group was Chinese (53.1%) followed by Indians (23.5%). The most common mechanism of injury was fall from height (66.3%) followed by injuries as a result of falling objects at work (21.9%). The percentage of patients who required surgical intervention was 69.9%. Patients admitted for major workplace related accidents had a median length of stay of 5 days in the hospital, a median length of 24 days of medical leave (ML), certifying them unfit for duty and the average cost of stay for each patient was S$11,000.
CONCLUSIONSWe have a better understanding of the epidemiology and socio-economic impact of workplace related accidents through this study. Workplace related accidents result in significant number of man-days lost from work and monetary cost to employers, medical insurance and the hospital. With an improved understanding, we propose methods to prevent and reduce such accidents in future. A direct consequence of which will be the possible reduction of hospitalisation costs and better allocation of healthcare resources in the future.
Accidents, Occupational ; trends ; Adult ; Female ; Humans ; Male ; Middle Aged ; Registries ; Singapore ; epidemiology ; Trauma Centers ; Trauma Severity Indices ; Wounds and Injuries ; epidemiology ; surgery ; Young Adult
5.Study on chemical constituents from leaves of Naudea officinalis.
Dawen XIE ; Yonghui LI ; Li ZHAO ; Gang DING ; Shaowei YUAN ; Jia XU ; Huarong ZHU ; Wei XIAO
China Journal of Chinese Materia Medica 2011;36(8):1037-1039
OBJECTIVETo study the chemical constituents of the leaves of Naudea officinalis.
METHODThe chemical constituents were separated by column chromatography and semi-preparative HPLC techniques, and their structures were determined by spectral analysis.
RESULTFive compounds were isolated and identified as strictosamide (1), 10-hydroxy strictosamide (2), kaempferol-3-O-rutinoside (3), rutin (4), pumiloside(5).
CONCLUSIONAmong these compounds, 2, 3, 4 are isolated from the leaves of Naudea officinalis for the first time.
Camptothecin ; analogs & derivatives ; chemistry ; isolation & purification ; Chromatography, High Pressure Liquid ; methods ; Kaempferols ; chemistry ; isolation & purification ; Magnetic Resonance Spectroscopy ; methods ; Plant Extracts ; chemistry ; isolation & purification ; Plant Leaves ; chemistry ; Rutin ; chemistry ; isolation & purification ; Vinca Alkaloids ; chemistry ; isolation & purification
6.Study on purification of strictosamide from Nauclea officinalis by macroporous resin.
Zhaoqing MENG ; Gang DING ; Yujie LIU ; Jia XU ; Wenjun LIU ; Wei XIAO
China Journal of Chinese Materia Medica 2011;36(8):1007-1010
OBJECTIVETo study on the purification of strictosamide from Nauclea officinalis by macroporous resin to provide reference for production.
METHODThe best macroporous resin was selected among 10 kinds of resins according to adsorption and desorption of the static adsorption experiments. The adsorption quantity, elution volume of water, concentration and elution volume of alcohol were determined according to the single factor experiment.
RESULTHPD400 was the best resin, and the best adsorption quantity was 20.23 mg x g(-1), the elution volume of water and 30% alcohol was 6 BV, and the elution volume of 70% alcohol was 4 BV.
CONCLUSIONThis technology is simple, feasible, and it can provide reference for the industrialized production.
Adsorption ; Chromatography, High Pressure Liquid ; methods ; Drugs, Chinese Herbal ; chemistry ; isolation & purification ; Ethanol ; chemistry ; Resins, Synthetic ; chemistry ; Rubiaceae ; chemistry ; Technology, Pharmaceutical ; methods ; Vinca Alkaloids ; chemistry ; isolation & purification
7.Using the sequenced sample cluster analysis to study the body mass index distribution characteristics of adults in different age groups and genders.
Y N CAI ; X T PEI ; P P SUN ; Y P XU ; L LIU ; Z G PING
Chinese Journal of Epidemiology 2018;39(6):821-825
Objective: To explore the characteristics of distribution on Chinese adult body mass index (BMI) in different age groups and genders and to provide reference related to obesity and related chronic diseases. Methods: Data from the China Health and Nutrition Survey in 2009 were used. Sequential sample cluster method was used to analyze the characteristics of BMI distribution in different age groups and genders by SAS. Results: Our results showed that the adult BMI in China should be divided into 3 groups according to their age, as 20 to 40 years old, 40 to 65 years old, and> 65 years old, in females or in total when grouped by difference of 5 years. For groupings in male, the three groups should be as 20 to 40, 40 to 60 years old and>60 years old. There were differences on distribution between the male and female groups. When grouped by difference of 10 years, all of the clusters for male, female and total groups as 20-40, 40-60 and>60 years old, became similar for the three classes, respectively, with no differences of distribution between gender, suggesting that the 5-years grouping was more accurate than the 10-years one, and BMI showing gender differences. Conclusions: BMI of the Chinese adults should be divided into 3 categories according to the characteristics of their age. Our results showed that BMI was increasing with age in youths and adolescents, remained unchanged in the middle-aged but decreasing in the elderly.
Adolescent
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Adult
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Age Distribution
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Aged
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Asian People/statistics & numerical data*
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Body Mass Index
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China/epidemiology*
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Female
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Humans
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Male
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Middle Aged
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Nutrition Surveys
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Obesity/ethnology*
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Sex Distribution
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Sex Factors
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Young Adult
8.The Local Alternative Ti-6Al-4V Alloy Coating of Surgery Steel Instruments for Laser Deposition Forming.
Ying XU ; Jian WU ; Feng XIAO ; Xiaofeng GU ; Wenmin LU ; Weibin REN
Chinese Journal of Medical Instrumentation 2020;44(3):205-209
Aiming at the medical practice problems of the surgical steel medical instruments, such as the crevice corrosion, the poor mechanical compatibility and the Ni, Cr plasma exudation, the laser deposition of Ti-6Al-4V alloy cladding layer at the local functional area as alternative coating was proposed and realized as a new process method. The accurate element content and good formability Ti-6Al-4V cladding powder was chosen, the low power and high duty cycle optimized laser process was adopt, the alternative coating of good fusion and low dilution was prepared. Through the elemental line scanning, the interface microstructure analysis and the experiments of basic mechanical properties, the basic properties of the cladding were characterized and verified. The experiments results showed that, the Ti, Al and V contents of the top coating were respectively about 88%, 4.9% and 3.9%, no sensitizing ions such as Cr and Ni were detected. Initial equiaxed α phase, flake β phase dist were distributed in the coating and interface, the α' martensite was precipitated at the boundary of the flake β phase, some refined granular β phase dispersion pinned to the grain boundary of basket structure. The microhardness of cladding layer was 352.08~312.76 HV0.1. The friction coefficient of the cladding layer was about 0.22~0.65. A new technology and method reference for improving and upgrading the performance of surgical medical devices is provided by this research.
Alloys
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Corrosion
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Materials Testing
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Steel
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Titanium
9.Study on the Quality of Scutellaria baicalensis with Different Harvesting Periods by IR-TL and HPLC-MS
Shengnan ZHAO ; Suli LIU ; Yanglu XU ; Shouzhuo LI
China Pharmacy 2019;30(12):1669-1674
OBJECTIVE: To study effective component kinds and content difference of Scutellaria baicalensis with different harvesting periods collected in spring and autumn, and to determine the optimal harvesting time. METHODS: IR-IL was used to analyze the constitutions change of the components in S. baicalensis collected in different harvesting periods (annual, biennial and triennial, in spring and autumn, respectively). HPLC-MS method was used to analyze the contents change of 6 flavonoids (qroxylin A, chrysin, wogonin, wogonoside, baicalin, baicalein). RESULTS: Results of IR-TL analysis showed that S. baicalensis contained different components such as flavonoids, glycosides, saccharides, easters in different growth stages, among which the contents of glycosides in biennial S. baicalensis were the highest with more stable quality. The results of content determination of 6 flavonoids showed that different harvesting periods had a great influence on the contents of the above indicators. The overall content of biennial samples collected in spring was higher than that of autumn samples collected in the same year. CONCLUSIONS: This study provides a reliable analytical method for the quality control of S. baicalensis; spring harvest in two-year growth period may be the best harvesting time for S. baicalensis.
10.Phonological characteristics and rehabilitation training of abnormal velar in children with functional articulation disorders.
Lina XU ; Feng LI ; Yanyun ZHANG
West China Journal of Stomatology 2016;34(6):594-599
OBJECTIVETo explore the phonological characteristics and rehabilitation training of abnormal velar in patients with functional articulation disorders (FAD).
METHODSEighty-seven patients with FAD were observed of the phonological characteristics of velar. Seventy-two patients with abnormal velar accepted speech training. The correlation and simple linear regression analysis were carried out on abnormal velar articulation and age.
RESULTSThe articulation disorder of /g/ mainly showed replacement by /d/, /b/ or omission. /k/ mainly showed replacement by /d/, /t/, /g/, /p/, /b/. /h/ mainly showed replacement by /g/, /f/, /p/, /b/ or omission. The common erroneous articulation forms of /g/, /k/, /h/ were fronting of tongue and replacement by bilabial consonants. When velar combined with vowels contained /a/ and /e/, the main error was fronting of tongue. When velar combined with vowels contained /u/, the errors trended to be replacement by bilabial consonants. After 3 to 10 times of speech training, the number of erroneous words decreased to (6.24±2.61) from (40.28±6.08) before the speech training was established, the difference was statistically significant (Z=-7.379, P=0.000). The number of erroneous words was negatively correlated with age (r=-0.691, P=0.000). The result of simple linear regression analysis showed that the determination coefficient was 0.472.
CONCLUSIONSThe articulation disorder of velar mainly shows replacement, varies with the vowels. The targeted rehabilitation training hereby established is significantly effective. Age plays an important role in the outcome of velar.
Articulation Disorders ; Child ; Humans ; Language ; Tongue